Pourcel et al., Microbiology 2005
... Yersin (1894), strains of biovar Antiqua have been generally isolated from Asia and Africa; Medievalis was found in Central Asia, and Orientalis worldwide. Pestoides are particular strains isolated in Central Asia, and have never been found associated with disease in humans (Anisimov et al., 2004). ...
... Yersin (1894), strains of biovar Antiqua have been generally isolated from Asia and Africa; Medievalis was found in Central Asia, and Orientalis worldwide. Pestoides are particular strains isolated in Central Asia, and have never been found associated with disease in humans (Anisimov et al., 2004). ...
The genomic landscape of meiotic crossovers and gene
... genome information is more limited than for the reference accession Col. Figure 2A shows an example where three haplotypes appear to be present at a single locus when the short read data of Ler are aligned against the Col reference genome. This specific marker was used to assign NCO–GCs in two earli ...
... genome information is more limited than for the reference accession Col. Figure 2A shows an example where three haplotypes appear to be present at a single locus when the short read data of Ler are aligned against the Col reference genome. This specific marker was used to assign NCO–GCs in two earli ...
Analysis of single nucleotide polymorphisms in human
... eliminating such matches. Thus, this set of matches represents a conservative lower estimate of exonic regions. This set was further reduced to get a nonredundant set. First, only matches with e-values < 10-4 were considered as significant matches. These matches were then sorted in decreasing order ...
... eliminating such matches. Thus, this set of matches represents a conservative lower estimate of exonic regions. This set was further reduced to get a nonredundant set. First, only matches with e-values < 10-4 were considered as significant matches. These matches were then sorted in decreasing order ...
Harrisslides
... • Compile structured vocabularies describing aspects of molecular biology • Describe gene products using vocabulary terms (annotation) • Develop tools: • to query and modify the vocabularies and annotations • annotation tools for curators ...
... • Compile structured vocabularies describing aspects of molecular biology • Describe gene products using vocabulary terms (annotation) • Develop tools: • to query and modify the vocabularies and annotations • annotation tools for curators ...
Preface 1 PDF
... appear to be localized to Euglena mitochondria. During photosynthetic and aerobic growth, Euglena produces a β-1,3-glucan, paramylum, as the major storage product, while wax esters are accumulated during mitochondrial anaerobic fermentation. A number of uses for paramylum have been found, and the Eu ...
... appear to be localized to Euglena mitochondria. During photosynthetic and aerobic growth, Euglena produces a β-1,3-glucan, paramylum, as the major storage product, while wax esters are accumulated during mitochondrial anaerobic fermentation. A number of uses for paramylum have been found, and the Eu ...
Supporting Information Parfenov et al. 10.1073/pnas.1416074111
... (mean 0, SD 1); then, genes were standardized (mean = 0; SD = 1). Clustering of these normalized expression values revealed two clusters that were tightly associated with HPV integration status. (Fig. S2A). HPV Integration Breakpoint Enrichment Simulation. We identified the breakpoints of HPV integr ...
... (mean 0, SD 1); then, genes were standardized (mean = 0; SD = 1). Clustering of these normalized expression values revealed two clusters that were tightly associated with HPV integration status. (Fig. S2A). HPV Integration Breakpoint Enrichment Simulation. We identified the breakpoints of HPV integr ...
Isolation, Characterization, and Annotation: The Search for Novel
... and releasing mature phages from their previous host3. There are an estimated 1031 different bacteriophages on earth, making them one of the most numerous DNA-containing entities in existence4. Our research focuses on the isolation and characterization of mycobacteriophages, dsDNA tailed phages that ...
... and releasing mature phages from their previous host3. There are an estimated 1031 different bacteriophages on earth, making them one of the most numerous DNA-containing entities in existence4. Our research focuses on the isolation and characterization of mycobacteriophages, dsDNA tailed phages that ...
Unified display of Arabidopsis thaliana physical maps from AtDB, the
... methods and resources has been used by many groups to build the physical maps (3). Accordingly, the results of the physical mapping are displayed and/or published in many divergent ways ranging from text files to spreadsheets to graphical representations using computer drawing programs (Table 1). Th ...
... methods and resources has been used by many groups to build the physical maps (3). Accordingly, the results of the physical mapping are displayed and/or published in many divergent ways ranging from text files to spreadsheets to graphical representations using computer drawing programs (Table 1). Th ...
Developing expressed sequence tag libraries and
... (R. occidentalis) were utilized for RNA extraction. After conversion to cDNA and library construction, ESTs were sequenced, quality verified, assembled and scanned for SSRs. Primers flanking the SSRs were designed and a subset tested for amplification, polymorphism and transferability across species ...
... (R. occidentalis) were utilized for RNA extraction. After conversion to cDNA and library construction, ESTs were sequenced, quality verified, assembled and scanned for SSRs. Primers flanking the SSRs were designed and a subset tested for amplification, polymorphism and transferability across species ...
The evolutionary history of human chromosome 7
... segments, the authors concluded that these segmental duplications are of recent evolutionary origin. Their data indicated that a p47– phox-containing segment first duplicated locally and then some copies were distributed to three locations on chromosome 7 by inversion events. This would imply that t ...
... segments, the authors concluded that these segmental duplications are of recent evolutionary origin. Their data indicated that a p47– phox-containing segment first duplicated locally and then some copies were distributed to three locations on chromosome 7 by inversion events. This would imply that t ...
Ensembl variation resources Open Access Database
... Background: The maturing field of genomics is rapidly increasing the number of sequenced genomes and producing more information from those previously sequenced. Much of this additional information is variation data derived from sampling multiple individuals of a given species with the goal of discov ...
... Background: The maturing field of genomics is rapidly increasing the number of sequenced genomes and producing more information from those previously sequenced. Much of this additional information is variation data derived from sampling multiple individuals of a given species with the goal of discov ...
Intellectual property rights and innovation: Evidence from
... It has long been recognized that competitive markets may not provide adequate incentives for innovation (Nelson, 1959; Arrow, 1962). Given the presumed role of innovation in promoting economic growth, academics and policy makers have thus focused attention on the design of institutions to promote i ...
... It has long been recognized that competitive markets may not provide adequate incentives for innovation (Nelson, 1959; Arrow, 1962). Given the presumed role of innovation in promoting economic growth, academics and policy makers have thus focused attention on the design of institutions to promote i ...
Identity-by-descent filtering of exome sequence data for disease
... In this work, we describe a procedure for efficiently filtering exome sequencing data obtained from two or more affected siblings with an autosomal recessive Mendelian disorder based upon the identification of chromosomal regions identical by descent (IBD) in the presence of noisy sequence data. In ...
... In this work, we describe a procedure for efficiently filtering exome sequencing data obtained from two or more affected siblings with an autosomal recessive Mendelian disorder based upon the identification of chromosomal regions identical by descent (IBD) in the presence of noisy sequence data. In ...
Whole Genome Sequencing and foodborne pathogens: a UK
... information from investigations in other European countries, provides compelling evidence to support the hypothesis that the outbreak was associated with eggs from one Company. ...
... information from investigations in other European countries, provides compelling evidence to support the hypothesis that the outbreak was associated with eggs from one Company. ...
SNP discovery
... (1) the SNP call was within the first or last 60 bases of a linkage group (LG) sequence, (2) the reference genome base was ambiguous at the SNP position or within 60 bases of it, (3) Another SNP was detected within 50 bases, (4) the average copy number of the SNP flanking region was more than two, ( ...
... (1) the SNP call was within the first or last 60 bases of a linkage group (LG) sequence, (2) the reference genome base was ambiguous at the SNP position or within 60 bases of it, (3) Another SNP was detected within 50 bases, (4) the average copy number of the SNP flanking region was more than two, ( ...
Modeling Trabecular Microstructure Evolution via Genetic Algorithm by Samuel W. L. Shames
... the same set of points under the same stress state at three stages of evolution. The figure shows how drastically the microstructure of the system can change in only a small number of generations and how the general tendency is for the number of struts with a large strain energy—bright red struts—to ...
... the same set of points under the same stress state at three stages of evolution. The figure shows how drastically the microstructure of the system can change in only a small number of generations and how the general tendency is for the number of struts with a large strain energy—bright red struts—to ...
Biotechnology Timeline
... The Wake Forest Institute for Regenerative Medicine, in WinstonSalem, N.C., creates the first laboratory-grown organs by successfully transplanting bladders grown from a patient’s own cells. This method greatly reduces the risk of organ rejection. ...
... The Wake Forest Institute for Regenerative Medicine, in WinstonSalem, N.C., creates the first laboratory-grown organs by successfully transplanting bladders grown from a patient’s own cells. This method greatly reduces the risk of organ rejection. ...
PPTX - Tandy Warnow
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
Biomart/ GENOME ALIGNMENT III
... The comparison of the mouse and human genomes has demonstrated the power of comparative genomics in inferring the evolutionary history of species and in identifying functional regions in genomes. The possibilities for identifying regions under selection are enhanced with the addition of more sequenc ...
... The comparison of the mouse and human genomes has demonstrated the power of comparative genomics in inferring the evolutionary history of species and in identifying functional regions in genomes. The possibilities for identifying regions under selection are enhanced with the addition of more sequenc ...
Preparation of PCR Products for DNA Sequencing
... INTRODUCTION The polymerase chain reaction (PCR) is widely used to prepare product for DNA sequencing. High specificity and good yield are considered prerequisites to the generation of high-quality DNA sequence data directly from PCR product. However, despite measures taken to standardize PCR set-up ...
... INTRODUCTION The polymerase chain reaction (PCR) is widely used to prepare product for DNA sequencing. High specificity and good yield are considered prerequisites to the generation of high-quality DNA sequence data directly from PCR product. However, despite measures taken to standardize PCR set-up ...
The biased nucleotide composition of the HIV genome: a constant
... O (35%, Table 1). Group N and P viruses appear to contain slightly higher (group N) or lower (group P) levels of A-nucleotides, but only one (group P) or no (group N) full-length genomes with long terminal repeats (LTRs) are available for these groups (Table 1). As the LTR is relatively A-poor [5], ...
... O (35%, Table 1). Group N and P viruses appear to contain slightly higher (group N) or lower (group P) levels of A-nucleotides, but only one (group P) or no (group N) full-length genomes with long terminal repeats (LTRs) are available for these groups (Table 1). As the LTR is relatively A-poor [5], ...
Databases_what_and_w..
... TIFF ( Uncompressed) decompressor are needed to see thi s pi ctur e. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. ...
... TIFF ( Uncompressed) decompressor are needed to see thi s pi ctur e. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. ...
Phytic Acid and Inorganic Phosphate Composition in Soybean Lines
... inositol polyphosphate kinase, with lower inositol phosphates also capable of being substrates in addition to inositol-pentakisphosphate (Caddick et al., 2008; StevensonPaulik et al., 2005; Sun et al., 2007; Sweetman et al., 2006). Soybean is derived from ancient genome duplication events, and the e ...
... inositol polyphosphate kinase, with lower inositol phosphates also capable of being substrates in addition to inositol-pentakisphosphate (Caddick et al., 2008; StevensonPaulik et al., 2005; Sun et al., 2007; Sweetman et al., 2006). Soybean is derived from ancient genome duplication events, and the e ...
Human Genome Project
The Human Genome Project (HGP) is an international scientific research project with the goal of determining the sequence of chemical base pairs which make up human DNA, and of identifying and mapping all of the genes of the human genome from both a physical and functional standpoint. It remains the world's largest collaborative biological project. The project was proposed and funded by the US government; planning started in 1984, got underway in 1990, and was declared complete in 2003. A parallel project was conducted outside of government by the Celera Corporation, or Celera Genomics, which was formally launched in 1998. Most of the government-sponsored sequencing was performed in twenty universities and research centers in the United States, the United Kingdom, Japan, France, Germany, and China.The Human Genome Project originally aimed to map the nucleotides contained in a human haploid reference genome (more than three billion). The ""genome"" of any given individual is unique; mapping ""the human genome"" involves sequencing multiple variations of each gene.