VAAST 2 User`s Guide
... VAAST, the Variant Annotation, Analysis and Search Tool is a probabilistic search tool for identifying damaged genes and their disease-‐causing variants in personal genome sequences. VAAST builds upon existing ...
... VAAST, the Variant Annotation, Analysis and Search Tool is a probabilistic search tool for identifying damaged genes and their disease-‐causing variants in personal genome sequences. VAAST builds upon existing ...
Standard PDF - Wiley Online Library
... The best understood special form of P. carinii, P. carinii formae specialis (f.sp.) carinii, appears to be haploid and contains about 8 million base pairs of DNA (8.5 fg) per nucleus. The genome of P. carinii f.sp. carinii is divided into 13^15 linear chromosomes that range from 300 to 700 kb in siz ...
... The best understood special form of P. carinii, P. carinii formae specialis (f.sp.) carinii, appears to be haploid and contains about 8 million base pairs of DNA (8.5 fg) per nucleus. The genome of P. carinii f.sp. carinii is divided into 13^15 linear chromosomes that range from 300 to 700 kb in siz ...
A survey on computational methods for enhancer and
... methods have emerged as an alternative for predicting the genomic locations of enhancers and their target genes. These methods have used a variety of features for predicting enhancers, including sequence motifs and epigenomic modifications. Potential enhancer targets have been predicted using activi ...
... methods have emerged as an alternative for predicting the genomic locations of enhancers and their target genes. These methods have used a variety of features for predicting enhancers, including sequence motifs and epigenomic modifications. Potential enhancer targets have been predicted using activi ...
Wolbachia–host interactions: connecting phenotype to genotype
... parasites of insects is becoming complicated as an increasing number of papers describe a richer picture of Wolbachia-mediated phenotypes in insects. The search for the molecular basis for this phenotypic variability has been greatly aided by the recent sequencing of several Wolbachia genomes. These ...
... parasites of insects is becoming complicated as an increasing number of papers describe a richer picture of Wolbachia-mediated phenotypes in insects. The search for the molecular basis for this phenotypic variability has been greatly aided by the recent sequencing of several Wolbachia genomes. These ...
Phylogenetic analysis of three complete gap
... gene accession numbers for each connexin. Italicized accession numbers indicate partial predicted transcripts. Boldfaced entries are the gene names for the zebrafish connexins. ...
... gene accession numbers for each connexin. Italicized accession numbers indicate partial predicted transcripts. Boldfaced entries are the gene names for the zebrafish connexins. ...
Tracing the Thread of Plastid Diversity through the Tapestry of Life
... the plastid genome are encoded in the nuclear genome and must be targeted to the plastid. Three mechanisms underlie this reduction of the plastid genome; gene loss, substitution, and transfer. First, in the case of gene loss, genes that no longer confer a selective advantage in the endosymbiotic env ...
... the plastid genome are encoded in the nuclear genome and must be targeted to the plastid. Three mechanisms underlie this reduction of the plastid genome; gene loss, substitution, and transfer. First, in the case of gene loss, genes that no longer confer a selective advantage in the endosymbiotic env ...
A MIAME-compliant Microarray Database
... • Time course after exposure to GA14 • Found some up regulated (230) and down regulated genes (127) • Chose 30 transcripts to check by QRT-PCR ...
... • Time course after exposure to GA14 • Found some up regulated (230) and down regulated genes (127) • Chose 30 transcripts to check by QRT-PCR ...
Array-based sequencing of filaggrin gene for
... 146700) and represent the most significant genetic variants associated with risk of atopic dermatitis (AD) (Palmer et al. 2006; Smith et al. 2006; van den Oord and Sheikh 2009). IV is one of the most common inherited skin diseases with surveys reporting a population prevalence of up to 1 in 250, wit ...
... 146700) and represent the most significant genetic variants associated with risk of atopic dermatitis (AD) (Palmer et al. 2006; Smith et al. 2006; van den Oord and Sheikh 2009). IV is one of the most common inherited skin diseases with surveys reporting a population prevalence of up to 1 in 250, wit ...
Folie 1 - NETTAB
... Hospital Bonn participated in the Boston Children’s Hospital’s CLARITY challenge. ...
... Hospital Bonn participated in the Boston Children’s Hospital’s CLARITY challenge. ...
18. The Reference Sequence (RefSeq) Project
... or standards of judgment are possible, which is why such a work should be attributed to the synthesizing “editors”. RefSeq does not exclude other syntheses based on the same primary information. But, similar to a review article, it allows the comparison of many different observations taken over time ...
... or standards of judgment are possible, which is why such a work should be attributed to the synthesizing “editors”. RefSeq does not exclude other syntheses based on the same primary information. But, similar to a review article, it allows the comparison of many different observations taken over time ...
Inference of homologous recombination in bacteria using whole
... donor contributes only a small contiguous segment of DNA whereas the recipient contributes the rest of the genome. For a given sample of bacteria, it is thus possible to define its clonal genealogy [7] irrespective of how frequently recombination happened, by tracing back in time the ancestry of th ...
... donor contributes only a small contiguous segment of DNA whereas the recipient contributes the rest of the genome. For a given sample of bacteria, it is thus possible to define its clonal genealogy [7] irrespective of how frequently recombination happened, by tracing back in time the ancestry of th ...
24 Recombination Hotspots in Nonallelic Homologous Recombination
... novo NAHR events are subsequently identified by comparing the genomes of patients and their parents. A collection of de novo NAHR events can then be fine-mapped to identify and ultimately sequence the rearrangement breakpoints. Not all recurrent rearrangements result from NAHR (11) and so the prelim ...
... novo NAHR events are subsequently identified by comparing the genomes of patients and their parents. A collection of de novo NAHR events can then be fine-mapped to identify and ultimately sequence the rearrangement breakpoints. Not all recurrent rearrangements result from NAHR (11) and so the prelim ...
Annotation Strategy Guide - GEP Community Server
... Selecting a better supported splice site: While extension of an open reading frame is important for conserving the length of the coding exon, it is also important to consider selecting the best-supported splice site. For example, let’s look at the first coding exon (1_2365_0) of Dyrk3 in D. mojave ...
... Selecting a better supported splice site: While extension of an open reading frame is important for conserving the length of the coding exon, it is also important to consider selecting the best-supported splice site. For example, let’s look at the first coding exon (1_2365_0) of Dyrk3 in D. mojave ...
Specialized Transduction by Bacteriophage P22 in Salmonella typhimurium: Genetic and Physical Structure of the Transducing Genomes and the Prophage Attachment Site.
... P22pro-I and P22pro-3 are specialized transducing derivatives of phage P22 that carry the proA and proB genes of Salmonella typhimurium. These genes lie immediately adjacent to the prophage attachment site on the bacterial chromosome. By examining DNA heteroduplexes in the electron microscope, we fo ...
... P22pro-I and P22pro-3 are specialized transducing derivatives of phage P22 that carry the proA and proB genes of Salmonella typhimurium. These genes lie immediately adjacent to the prophage attachment site on the bacterial chromosome. By examining DNA heteroduplexes in the electron microscope, we fo ...
The first page should show the paper title, names and addresses of
... chromosomal rearrangements that might have occurred during karyotype evolution in Galliformes could be resolved using the FISH on lampbrush chromosomes as an investigative procedure? On the other hand, why should we still use time-consuming methods like comparative FISH mapping on LBCs when next-gen ...
... chromosomal rearrangements that might have occurred during karyotype evolution in Galliformes could be resolved using the FISH on lampbrush chromosomes as an investigative procedure? On the other hand, why should we still use time-consuming methods like comparative FISH mapping on LBCs when next-gen ...
SVPaper050711
... What we know about the burden of SVs’ impact on phenotypes in the mouse comes primarily from analyses of gene expression 15,16,21. Up to 28% of the between-strain variation in gene expression in hematopoietic stem and progenitor cells has been attributed to SVs15; for genes lying within SVs, the lat ...
... What we know about the burden of SVs’ impact on phenotypes in the mouse comes primarily from analyses of gene expression 15,16,21. Up to 28% of the between-strain variation in gene expression in hematopoietic stem and progenitor cells has been attributed to SVs15; for genes lying within SVs, the lat ...
Package `biomartr`
... Description Perform metagenomic data retrieval and functional annotation retrieval. In detail, this package aims to provide users with a standardized way to automate genome, proteome, coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI' and 'ENSEMBL' databases. Furthermore, an interf ...
... Description Perform metagenomic data retrieval and functional annotation retrieval. In detail, this package aims to provide users with a standardized way to automate genome, proteome, coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI' and 'ENSEMBL' databases. Furthermore, an interf ...
Complete comparative genomic analysis of two field isolates of
... Analysis of all variations showed that 398 point mutations, six insertions totalling 30 bp and 20 deletions totalling 1326 bp occur in predicted ORFs; 65 point mutations, three insertions (13 bp) and five deletions (102 bp) occur in intergenic regions; and 58 point mutations, two insertions (79 bp) ...
... Analysis of all variations showed that 398 point mutations, six insertions totalling 30 bp and 20 deletions totalling 1326 bp occur in predicted ORFs; 65 point mutations, three insertions (13 bp) and five deletions (102 bp) occur in intergenic regions; and 58 point mutations, two insertions (79 bp) ...
Online resources for genetic variation study-Part One
... results from published studies. Each OMIM record provides a summary of the current state of knowledge of the genetic basis of a disorder, which contains the following information: description and clinical features of a disorder or a gene involved in ...
... results from published studies. Each OMIM record provides a summary of the current state of knowledge of the genetic basis of a disorder, which contains the following information: description and clinical features of a disorder or a gene involved in ...
The Johns Hopkins University - American University of Beirut
... • Servers have the records you want • You need to understand the data they have, and how it is organized • There are often many ways to get to an answer. • Route to get there is not always obvious, but you need to think of alternatives and traps. • Use some query language – each system has its own. ...
... • Servers have the records you want • You need to understand the data they have, and how it is organized • There are often many ways to get to an answer. • Route to get there is not always obvious, but you need to think of alternatives and traps. • Use some query language – each system has its own. ...
factor occupancy and gene expression Effects of
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
factor occupancy and gene expression Effects of sequence variation
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
factor occupancy and gene expression Effects of sequence variation
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
... variation in genome sequence with variation in TF binding and gene expression is challenging due to environmental differences between individuals and cell types. To address this problem, we measured genome-wide differential allelic occupancy of 24 TFs and EP300 in a human lymphoblastoid cell line GM ...
Human Genome Project
The Human Genome Project (HGP) is an international scientific research project with the goal of determining the sequence of chemical base pairs which make up human DNA, and of identifying and mapping all of the genes of the human genome from both a physical and functional standpoint. It remains the world's largest collaborative biological project. The project was proposed and funded by the US government; planning started in 1984, got underway in 1990, and was declared complete in 2003. A parallel project was conducted outside of government by the Celera Corporation, or Celera Genomics, which was formally launched in 1998. Most of the government-sponsored sequencing was performed in twenty universities and research centers in the United States, the United Kingdom, Japan, France, Germany, and China.The Human Genome Project originally aimed to map the nucleotides contained in a human haploid reference genome (more than three billion). The ""genome"" of any given individual is unique; mapping ""the human genome"" involves sequencing multiple variations of each gene.