Plasmodium malariae and P. ovale genomes provide insights into
... Molecular dating suggests that these host adaptations occurred over similar evolutionary timescales. In addition to the core genome that is conserved between species, differences in gene content can be linked to their specific biology. The genome suggests that P. malariae expresses a family of heter ...
... Molecular dating suggests that these host adaptations occurred over similar evolutionary timescales. In addition to the core genome that is conserved between species, differences in gene content can be linked to their specific biology. The genome suggests that P. malariae expresses a family of heter ...
Submitting an RNA-Seq job at PATRIC
... 5. Clicking on Jobs opens the Jobs Status page, where researchers can see the progression of the assembly job as well as the status of all the previous service jobs that have been ...
... 5. Clicking on Jobs opens the Jobs Status page, where researchers can see the progression of the assembly job as well as the status of all the previous service jobs that have been ...
Documentation - Broad Institute
... expectation maximization algorithm that iteratively recalibrates base quality scores to increase specificity. V-Phaser can reliably detect rare variants in mixed populations that occur at frequencies of <1%. 2) V-Profiler. V-Profiler is a tool to analyze and visualize variants. V-Profiler takes a re ...
... expectation maximization algorithm that iteratively recalibrates base quality scores to increase specificity. V-Phaser can reliably detect rare variants in mixed populations that occur at frequencies of <1%. 2) V-Profiler. V-Profiler is a tool to analyze and visualize variants. V-Profiler takes a re ...
here
... The Problem with Keeping the Current Classification Current classification is fundamentally anchored in a division that is not biologically based. This division artificially partitions the scientific community This situation leads to erroneous conclusions based on ...
... The Problem with Keeping the Current Classification Current classification is fundamentally anchored in a division that is not biologically based. This division artificially partitions the scientific community This situation leads to erroneous conclusions based on ...
The Maize Genome Poster
... research in maize genetics into practical applications. One event of particular impact was the demonstration of hybrid vigor, or heterosis, which results when two parental varieties, both showing reduced stature caused by inbreeding, are crossed to produce more robust hybrid offspring. Vigorous hybr ...
... research in maize genetics into practical applications. One event of particular impact was the demonstration of hybrid vigor, or heterosis, which results when two parental varieties, both showing reduced stature caused by inbreeding, are crossed to produce more robust hybrid offspring. Vigorous hybr ...
Correlation between sequence divergence and polymorphism
... By visualizing the remaining contigs in Consed v21 [21] and using information regarding reads that span multiple contigs, 63 of the initial contigs were reassembled into nine final contigs with a total length of 147.3 kb and an average single copy coverage depth of 20×. For the ccsA gene, PCR and Sa ...
... By visualizing the remaining contigs in Consed v21 [21] and using information regarding reads that span multiple contigs, 63 of the initial contigs were reassembled into nine final contigs with a total length of 147.3 kb and an average single copy coverage depth of 20×. For the ccsA gene, PCR and Sa ...
CpG Mutation Rates in the Human Genome Are
... throughout the entire length of the SNP sequence were identical with the chimpanzee sequence. For this purpose, all nucleotides in repetitive sequences and/or aligned with gaps were counted as mismatches. We also discarded SNPs whose sequences had more than one polymorphic position or more than two ...
... throughout the entire length of the SNP sequence were identical with the chimpanzee sequence. For this purpose, all nucleotides in repetitive sequences and/or aligned with gaps were counted as mismatches. We also discarded SNPs whose sequences had more than one polymorphic position or more than two ...
- ResearchOnline@JCU
... colon; one sibling has multiple serrated polyps and another a single large adenoma. Their mother developed pancreatic cancer and died before this study at age 50 years. On the paternal side, ...
... colon; one sibling has multiple serrated polyps and another a single large adenoma. Their mother developed pancreatic cancer and died before this study at age 50 years. On the paternal side, ...
Diapositiva 1
... hybridization to a radiolabeled DNA probe containing multiple copies of the minisatellite core sequence. A minisatellite profile consisting of many bands (within the 4-20 kb range) is generated by using common multilocus probes that are able to hybridize to minisatellite sequences in different speci ...
... hybridization to a radiolabeled DNA probe containing multiple copies of the minisatellite core sequence. A minisatellite profile consisting of many bands (within the 4-20 kb range) is generated by using common multilocus probes that are able to hybridize to minisatellite sequences in different speci ...
Lesson Overview - Dr. Thornton`s Courses
... There have been no reported instances of babies being born without an X chromosome, indicating that this chromosome contains genes that are vital for the survival and development of the embryo. ...
... There have been no reported instances of babies being born without an X chromosome, indicating that this chromosome contains genes that are vital for the survival and development of the embryo. ...
Integrated genome sequence and linkage map of physic nut
... Genome sequence and linkage map of physic nut 811 et al., 2008). This small genome makes physic nut an attractive model for the functional genomics of Euphorbiaceae. Generation of primary genome information for the physic nut will provide information on factors controlling oil yield, abiotic stress ...
... Genome sequence and linkage map of physic nut 811 et al., 2008). This small genome makes physic nut an attractive model for the functional genomics of Euphorbiaceae. Generation of primary genome information for the physic nut will provide information on factors controlling oil yield, abiotic stress ...
Nematode genome evolution
... Most nematodes have haploid chromosome numbers of n=4–12 (Walton, 1959). The karyotypes of just ~300 species have been studied, but nematodes display a lot of karyotypic variation (Špakulová and Casanova, 2004). The lowest haploid number is n=1 in Parascaris univalens, but very high counts are seen ...
... Most nematodes have haploid chromosome numbers of n=4–12 (Walton, 1959). The karyotypes of just ~300 species have been studied, but nematodes display a lot of karyotypic variation (Špakulová and Casanova, 2004). The lowest haploid number is n=1 in Parascaris univalens, but very high counts are seen ...
The Polymerase Chain Reaction (PCR) provides an extremely
... Sequencing methods - The process of determining the order of the nucleotide bases along a DNA strand is called DNA sequencing - In 1977 two separate methods for sequencing DNA were developed: the chain termination method or cycle sequencing (Sanger et al.) and the chemical degradation method or Maxa ...
... Sequencing methods - The process of determining the order of the nucleotide bases along a DNA strand is called DNA sequencing - In 1977 two separate methods for sequencing DNA were developed: the chain termination method or cycle sequencing (Sanger et al.) and the chemical degradation method or Maxa ...
Annotation Practice Activity [Based on materials from the GEP
... The phase is the number of bases “left over” after the last full codon in the exon. Thus, to prevent a frame shift, the phases at the end of exon and the beginning of the next must add up to three. Sometimes there are multiple possible splice sites so you will need to determine the most likely corre ...
... The phase is the number of bases “left over” after the last full codon in the exon. Thus, to prevent a frame shift, the phases at the end of exon and the beginning of the next must add up to three. Sometimes there are multiple possible splice sites so you will need to determine the most likely corre ...
Plant LTR-retrotransposons and MITEs: control of
... et al., 2002; Zhang et al., 2000), where they can also form nested structures (Jiang and Wessler, 2001). Most MITE families are present in hundreds of copies of different subfamilies in plant genomes (reviewed in Feschotte et al., 2002b), but in some cases, like the maize mPIF element, which is pres ...
... et al., 2002; Zhang et al., 2000), where they can also form nested structures (Jiang and Wessler, 2001). Most MITE families are present in hundreds of copies of different subfamilies in plant genomes (reviewed in Feschotte et al., 2002b), but in some cases, like the maize mPIF element, which is pres ...
Fusion Detection using Archer Analysis
... The software requires a single read spanning two separate genes to be considered a fusion candidate. At least 23 bp need to be mapped on either side of the apparent breakpoint to be a valid fusion candidate read. NOTE: Reads from a paired-end read library where each read maps completely to a single ...
... The software requires a single read spanning two separate genes to be considered a fusion candidate. At least 23 bp need to be mapped on either side of the apparent breakpoint to be a valid fusion candidate read. NOTE: Reads from a paired-end read library where each read maps completely to a single ...
Full Text
... are absent in POB. We also acknowledge that currently POB does not include homeologs defined in (Glover, et al., 2016) as same species genes originated by a speciation event, which were brought back together in the same genome by allopolyploidization, but we plan to address these insufficiencies in ...
... are absent in POB. We also acknowledge that currently POB does not include homeologs defined in (Glover, et al., 2016) as same species genes originated by a speciation event, which were brought back together in the same genome by allopolyploidization, but we plan to address these insufficiencies in ...
TEV_v7_BY
... (Figure 3b). Assuming that TEVs inserted in the antisense orientation are not under selection, then approximately 50% of all ERV insertions in the sense orientation into the introns of protein coding genes are deleterious, as are about one-third of LINE or SINE sense insertions. The large set of TEV ...
... (Figure 3b). Assuming that TEVs inserted in the antisense orientation are not under selection, then approximately 50% of all ERV insertions in the sense orientation into the introns of protein coding genes are deleterious, as are about one-third of LINE or SINE sense insertions. The large set of TEV ...
Navigating the HapMap - Oxford Academic
... likely to become a standard for assessing genetic diversity in human populations, against which additional communities are also likely to be characterized. Three years after the launch of the project, genotyping of 4.6 million SNPs is complete and a number of tools are now offering an integrated vie ...
... likely to become a standard for assessing genetic diversity in human populations, against which additional communities are also likely to be characterized. Three years after the launch of the project, genotyping of 4.6 million SNPs is complete and a number of tools are now offering an integrated vie ...
Information Encoding in Biological Molecules: DNA and
... Sanger Institute to develop a software system which produces and maintains automatic annotation on eukaryotic genomes. Ensembl is primarily funded by the Wellcome Trust” ...
... Sanger Institute to develop a software system which produces and maintains automatic annotation on eukaryotic genomes. Ensembl is primarily funded by the Wellcome Trust” ...
ppt_II
... Sanger Institute to develop a software system which produces and maintains automatic annotation on eukaryotic genomes. Ensembl is primarily funded by the Wellcome Trust” ...
... Sanger Institute to develop a software system which produces and maintains automatic annotation on eukaryotic genomes. Ensembl is primarily funded by the Wellcome Trust” ...
Analysis of Virulence Potential of Escherichia coli O145 strains
... Methods: A total of 87 STEC O145 strains isolated from cattle feces, hide, and human clinical samples were used for the study. The strains were isolated from cattle feces (n=18) and hide samples (n=67) collected at multiple feedlots and abattoirs, respectively, in Midwestern states of the United Sta ...
... Methods: A total of 87 STEC O145 strains isolated from cattle feces, hide, and human clinical samples were used for the study. The strains were isolated from cattle feces (n=18) and hide samples (n=67) collected at multiple feedlots and abattoirs, respectively, in Midwestern states of the United Sta ...
Homologous and Nonhomologous Rearrangements: Interactions
... therefore giving rise to the protein’s primary sequence (figure 2). As in real organisms, genes can be found on six different reading frames (three on each strand), giving the possibility for the organisms to evolve overlapping genes, which are commonly found in virus and bacteria. Protein “folding” ...
... therefore giving rise to the protein’s primary sequence (figure 2). As in real organisms, genes can be found on six different reading frames (three on each strand), giving the possibility for the organisms to evolve overlapping genes, which are commonly found in virus and bacteria. Protein “folding” ...
Chapter 14: The Human Genome Section 14
... Some Currently Available DNA-Based Gene Tests •Alpha-1-antitrypsin deficiency (AAT; emphysema and liver disease) •Amyotrophic lateral sclerosis (ALS; Lou Gehrig's Disease; progressive motor function loss leading to paralysis and death) •Alzheimer's disease* (APOE; late-onset variety of senile dement ...
... Some Currently Available DNA-Based Gene Tests •Alpha-1-antitrypsin deficiency (AAT; emphysema and liver disease) •Amyotrophic lateral sclerosis (ALS; Lou Gehrig's Disease; progressive motor function loss leading to paralysis and death) •Alzheimer's disease* (APOE; late-onset variety of senile dement ...
Human Genome Project
The Human Genome Project (HGP) is an international scientific research project with the goal of determining the sequence of chemical base pairs which make up human DNA, and of identifying and mapping all of the genes of the human genome from both a physical and functional standpoint. It remains the world's largest collaborative biological project. The project was proposed and funded by the US government; planning started in 1984, got underway in 1990, and was declared complete in 2003. A parallel project was conducted outside of government by the Celera Corporation, or Celera Genomics, which was formally launched in 1998. Most of the government-sponsored sequencing was performed in twenty universities and research centers in the United States, the United Kingdom, Japan, France, Germany, and China.The Human Genome Project originally aimed to map the nucleotides contained in a human haploid reference genome (more than three billion). The ""genome"" of any given individual is unique; mapping ""the human genome"" involves sequencing multiple variations of each gene.