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lecture 1 File
lecture 1 File

... When bacteriophages (viruses that infect bacteria) infect a bacterial cell, their normal mode of reproduction is to harness the replicational, transcriptional, and translation machinery of the host bacterial cell to make numerous virions, or complete viral particles, including the viral DNA or RNA a ...
June 2011 MS - CIE Chemistry
June 2011 MS - CIE Chemistry

... may be used: Fe, Zn, Sn, Pb, Al, Mg. (NOT Ca, Li, Na. K etc.) or with a suitable nonmetallic reducing agent, e.g. SO2 or Sn2+, but not something that wouldn’t react, like H2 or By electrolysis (with carefully controlled voltage) ...
what is mutation?
what is mutation?

... - Of the mutations that do affect the phenotype, the most common effect of mutations is lethality, because most genes are necessary for life. Only a small percentage of mutations causes a visible but non-lethal change in the phenotype. ...
Topologically Non-linked Circular Duplex DNA
Topologically Non-linked Circular Duplex DNA

... Although enzyme systems adequate for this task have long since been found and characterized, there have nevertheless arisen a number of proposals for alternative DNA structures in which the strands are topologically non-linked, so that they might separate during replication without having to be unwo ...
inducers - Navin Pokala
inducers - Navin Pokala

... PaJaMa experiment - Hfr(I+Z+) mated to F- I-Z- Acer 1 hr, the I+Z+ genes enter the recipient F- cells lacZ+ is now in the recipient (I- Z-) cell No repressor à nothing to block the new lacZ gene à β-galactosidase produc8on expected to begin β-gal produc8on expected to eventually shut d ...
Finding Eukaryotic Open reading frames.
Finding Eukaryotic Open reading frames.

... Hypothesis why this is the case? • Like prokaryotic DNA the CDS sequence is highly conserved so database searches can facilitate determining exons and thus ORF. • By extracting a possible exon region. It can be submitted to a search for similar sequences (BLAST search) to see what it may reveal. • I ...
CHAPTER 19 DNA Mutation and Repair
CHAPTER 19 DNA Mutation and Repair

... b. Base-modifying agents can induce mutations at any stage of the cell cycle. They work by modifying the chemical structure and properties of the bases. Three types are (Figure 19.13): i. Deaminating agents remove amino groups. An example is nitrous acid (HNO2 ), which deaminates G, C and A. (1) HN ...
Protein Synthesis Card Sort
Protein Synthesis Card Sort

... attaches to the unzipped DNA and reads the A, T, G, C (Nitrogen base pairs) code. ...
CHAPTER 4
CHAPTER 4

... 0.12. There is no evidence of linkage even though both genes are in the X chromosome. 4-9. The frequency of recombination between the genes is 9/200 = 0.045, or 4.5 percent. 4-10. (a) They are not alleles because they fail to segregate; if they were alleles, all the progeny would be resistant to one ...
Developing codominant PCR markers in pines
Developing codominant PCR markers in pines

... Forest trees are different from nearly all other crop plants in that even the most commercially important species are relatively undomesticated. As was pointed out some time ago (Libby et al. 1969) this feature brings both opportunities and responsibilities. While we are very much interested in bree ...
Chromosome mapping of the sweet potato little leaf
Chromosome mapping of the sweet potato little leaf

... To further understand the genomic diversity and genetic architecture of phytoplasmas, a physical and genetic map of the sweet potato little leaf (SPLL) strain V4 phytoplasma chromosome was determined. PFGE was used to determine the size of the SPLL-V4 genome, which was estimated to be 622 kb. A phys ...
Transcription – Gene regulation
Transcription – Gene regulation

... To analyze E.coli promoters, one may align a set of promoter sequences by the position that marks the known transcription start site (TSS) and search for conserved regions in the sequences. E.coli promoters are found to contain 3 conserved sequence features - a region approximately 6 bp long with co ...
Investigation Of Haemoglobinopathy.
Investigation Of Haemoglobinopathy.

... testing for thal is tailored to prevalent local mutations and suggested mutations on the basis of preliminary testing. ► Based on PCR which provides rapid, accurate identification of multiple single point mutations. ...
Q. No. 1. How can RNA be distinguished from DNA?
Q. No. 1. How can RNA be distinguished from DNA?

... Ans. The brief existence of an mRNA molecule begins with transcription and ultimately ends in degradation. ...
Investigation Of Haemoglobinopathy.
Investigation Of Haemoglobinopathy.

... testing for thal is tailored to prevalent local mutations and suggested mutations on the basis of preliminary testing. ► Based on PCR which provides rapid, accurate identification of multiple single point mutations. ...
Biological Sequence Data Formats
Biological Sequence Data Formats

... longer than 15 character; (2) Spaces; and (3) Characters other than letters or numbers. FASTA Format: Multiple Entries Sometimes you need to input many sequences at the same time to a program, such as a multiple sequence alignment program. This is easy in FASTA format – see below. (Note: These seque ...
Multifractal analysis of DNA sequences using a novel chaos
Multifractal analysis of DNA sequences using a novel chaos

... the decay of correlations in the DNA sequence by Gxing a scale k = 1=2L , that corresponds to subsequences of length L, and by computing directly the spectrum fL () at that scale using (6). The way in which the spectrum varies provides a quantiGcation of the non-random structures existing within th ...
Link-Layer Hints for Detecting Network Attachments
Link-Layer Hints for Detecting Network Attachments

... • Event notifications from the link-layer will trigger the DNA algorithm: – Link up: • PDP context activation on GPRS • PPP establishment on cdma2000 • (re)association on IEEE 802.11f or secure association on IEEE 802.11i ...
A Variable Number of Tandem Repeats Locus with!, the Human
A Variable Number of Tandem Repeats Locus with!, the Human

... large retroposon family mapped to a chromosomal rite. HERVK10 is a 9.2-kb genome present in ,v50 copies per haploid human genome, and is homologous to both type A retroviruses and to the type B mouse mammary tumor virus (11). Both SINE-R11 and the retroposon of the C2 gene (SINE-R.C2) are homologous ...
Mutations
Mutations

... • You, as a microbiologist or a geneticist, have the ability to look at the sequence of an organism. You would do so to detect differences between “normal” DNA and mutations. • Your research objective today is to study the following mutant DNA sequences to detect the type of mutation and where it ta ...
Chapter 6: Extranuclear Inheritance, Imprinting, and Maternal Effect
Chapter 6: Extranuclear Inheritance, Imprinting, and Maternal Effect

... As we have already seen, not all genes follow a Mendelian pattern of inheritance. In this last section of the chapter you are introduced to yet another example: the concept of maternal effect. Simply stated, maternal effect means that the gene products of the mother have a stronger influence on the ...
video slide - CARNES AP BIO
video slide - CARNES AP BIO

... • Gene expression, the process by which DNA directs protein synthesis, includes two stages: transcription and translation Copyright © 2008 Pearson Education Inc., publishing as Pearson Benjamin Cummings ...
Identification of DNA polymorphism in cultivars using RAPD and AFLP
Identification of DNA polymorphism in cultivars using RAPD and AFLP

... per reaction)and sample throughput can be quite high throughput. Rapid's have also been proved to detect higher levels of polymorphism compared with RFLP in cases where the two techniques have been applied to the same material. They have been extensively used for screening diversity, particularly at ...
The molecular orientation of DNA bases on H
The molecular orientation of DNA bases on H

... molecular orbitals in molecules as small as the DNA bases. This effect can be strongly site dependent giving rise to different final states of the excitation of different atoms [9,12]. In order to take these effects into account a semi-empirical approach was used to simulate the 1s ! p*-transition regio ...
GENETICS – BIO 300
GENETICS – BIO 300

... look at the way Schaum’s Outline discusses linkage and mapping for alternative explanations - especially ...
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Cre-Lox recombination



In the field of genetics, Cre-Lox recombination is known as a site-specific recombinase technology, and is widely used to carry out deletions, insertions, translocations and inversions at specific sites in the DNA of cells. It allows the DNA modification to be targeted to a specific cell type or be triggered by a specific external stimulus. It is implemented both in eukaryotic and prokaryotic systems.The system consists of a single enzyme, Cre recombinase, that recombines a pair of short target sequences called the Lox sequences. This system can be implemented without inserting any extra supporting proteins or sequences. The Cre enzyme and the original Lox site called the LoxP sequence are derived from bacteriophage P1.Placing Lox sequences appropriately allows genes to be activated, repressed, or exchanged for other genes. At a DNA level many types of manipulations can be carried out. The activity of the Cre enzyme can be controlled so that it is expressed in a particular cell type or triggered by an external stimulus like a chemical signal or a heat shock. These targeted DNA changes are useful in cell lineage tracing and when mutants are lethal if expressed globally.The Cre-Lox system is very similar in action and in usage to the FLP-FRT recombination system.
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