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moluceular lab 1
moluceular lab 1

... 1-H-bond : ( Binding between parts of near region and far region from poly-peptide ) 2-Ionic bond : (Binding between free of Amine group at one side of the poly-peptide with free of Carboxyl group on the other side of the poly-peptide 3-di-sulfide bond (-S-S-) :(Binding between two atom of sulfide i ...
Life’s molecular diversity is based on the properties of carbon 8/25/2011 1
Life’s molecular diversity is based on the properties of carbon 8/25/2011 1

... • Defensive proteins: The antibodies of the immune system • Signal proteins: Such as hormones that coordinate body activity ...
Organic Molecules
Organic Molecules

... • A. Introduction – Elements found – Generalized formula suggested by name – Names often end in –ose – Generally concerned with energy usage and storage – Some carbohydrates are structural ...
HOW GOOD DO WE HAVE TO BE TO SOLVE THE PROTEIN FOLDING AND PROTEIN-LIGAND SCORING PROBLEMS?
HOW GOOD DO WE HAVE TO BE TO SOLVE THE PROTEIN FOLDING AND PROTEIN-LIGAND SCORING PROBLEMS?

... challenges remain both from the computational/theoretical and experimental perspective. This talk will touch on several of these challenges and suggest ways in which to overcome them in the coming years. In particular, we will touch on the establishment of error bounds in computational prediction of ...
Growth Hormone Releasing Hormone (GHRH) - Cloud
Growth Hormone Releasing Hormone (GHRH) - Cloud

... Accurate Molecular Mass: 43.5kDa as determined by SDS-PAGE reducing conditions. Applications: SDS-PAGE; WB; ELISA; IP. (May be suitable for use in other assays to be determined by the end user.) Note: The possible reasons that the actual band size differs from the predicted are as follows: 1. Splice ...
Carbon Based Compounds
Carbon Based Compounds

... CHONS CHONSP ...
What is translation?
What is translation?

Biomolecules
Biomolecules

... • Large complex molecules in cells • Formed from repeating subunits • Most biomolecules are formed from a carbon backbone • Six most common elements in living organisms is • CHONPS ...
Activity: Protein Exploration!
Activity: Protein Exploration!

... What do you think hydrophobic means? Separate the word hydrophobic into its two parts – hydro and phobic. Hydro refers to water and phobia means dislike or fear, so hydrophobic sidechains “don’t like” (don’t mix with) water. Hydrophobic sidechains are also called non-polar sidechains. Now can you gu ...
Proteins
Proteins

... • the haem group is not made of AA, but is an integral part of the protein – prosthetic grp. • Each haem group contains an ion of iron ...
Protein Synthesis (Gene Expression) Notes
Protein Synthesis (Gene Expression) Notes

Introduction to Proteins
Introduction to Proteins

... been flopped over 90 degrees to the right for illustration purposes.) Cysteine has an R group that is similar but includes a sulfur atom. Other amino acids have R groups that range from a single hydrogen atom up to a double ring of carbon and nitrogen atoms, as you can see in the next plate. Color t ...
Protein Structure - George Mason University
Protein Structure - George Mason University

... • Like neural networks, this is another machine learning approach to secondary structure prediction. • A very large list of short sequence fragments is made by sliding a window (n=16) along a set of 100-400 training sequences of know structure but with minimal similarity. • A same-size window is sel ...
- thevignanam
- thevignanam

... • In a -pleated sheet, hydrogen bonds form between adjacent sections of polypeptides that are either running in the same direction (parallel -pleated sheet) or in the opposite direction (antiparallel -pleated sheet). • Turns reverse the direction of the polypeptide chain and are often found connect ...
File
File

...  AA #2 loses a hydrogen from its amine (NH2) group  The Carbon atom in the carboxyl group of AA#1 is now free to make ONE bond with the Nitrogen of the amine group in AA#2  This bond is called a PEPTIDE Bond ...
Nucleic Acids - Spring Branch ISD
Nucleic Acids - Spring Branch ISD

... Macromolecule- a very large molecule Monomer- a single unit or building block Polymer- a chain of monomers joined chemically in a dehydration synthesis reaction (a Hydrogen of one monomer joins with an OH- of another monomer and creates water as a byproduct. The remaining “loose ends of the two mono ...
How Does DNA Determine the Traits of a SNORK
How Does DNA Determine the Traits of a SNORK

... 2) Helicase does what to the DNA? ___________________________________ 3) Only one side of the DNA is copied. What is this side called? ____________________ 4) What is the side that is NOT copied called? _______________________________ 5) What different nitrogen base had to be used to make mRNA? ____ ...
Central Dogma “Jigsaw” Activity
Central Dogma “Jigsaw” Activity

proteins
proteins

... and forward forming a sheet of antiparallel strands. Once again it is held together by hydrogen bonds. ...
Amino acids
Amino acids

... Biology – S1 ...
PROTEIN PROTEIN: Amino Acids PROTEIN: Complete Proteins
PROTEIN PROTEIN: Amino Acids PROTEIN: Complete Proteins

... PROTEIN: Incomplete Proteins Incomplete proteins contain some, but not all, of the amino acids. Incomplete proteins are from other plant sources Examples Include: grains, dried beans, nuts and seeds. Incomplete proteins can be combined to create a complementary protein. ...
Proteins
Proteins

... 4. Contractile Proteins – are involved in movement. Actin and myosin are proteins that enable muscles to contract. 5. Storage Proteins – e.g. albumin / ovalbumin - the protein store that forms the white of eggs. 6. Defensive Proteins – Antibodies, which ...
Document
Document

...  Amphoteric, amphiprotic: act as acid or base  Ionic: electrolyte  Ampholyte: amphoteric electrolyte (in a pH gradient under an electric field, moves to its isoelectric point) ...
Biological Building Blocks Andrew Rylaarsdam
Biological Building Blocks Andrew Rylaarsdam

Chapters 2 - 5 Exam Prep: What to Know
Chapters 2 - 5 Exam Prep: What to Know

... Saturated vs unsaturated fats: properties, number of hydrogens, be able to ID by their structure ...
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Protein structure prediction



Protein structure prediction is the prediction of the three-dimensional structure of a protein from its amino acid sequence — that is, the prediction of its folding and its secondary, tertiary, and quaternary structure from its primary structure. Structure prediction is fundamentally different from the inverse problem of protein design. Protein structure prediction is one of the most important goals pursued by bioinformatics and theoretical chemistry; it is highly important in medicine (for example, in drug design) and biotechnology (for example, in the design of novel enzymes). Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). A continuous evaluation of protein structure prediction web servers is performed by the community project CAMEO3D.
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