Table S6: Domains present in the primary network generated from
... is thought interact with FtsZ. Thought to catalyse 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family. CbiD is essential for cobalami ...
... is thought interact with FtsZ. Thought to catalyse 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family. CbiD is essential for cobalami ...
Dynamics of Protein Metabolism in the Ruminant
... Protein that escapes microbial degradation passes to the lower digestive tract where it will be largely degraded. Only the very refractive N component such as N bound to lignin or products of the Maillard reaction will not be degraded. Benefit to the animal of supplying UIP will depend on the provis ...
... Protein that escapes microbial degradation passes to the lower digestive tract where it will be largely degraded. Only the very refractive N component such as N bound to lignin or products of the Maillard reaction will not be degraded. Benefit to the animal of supplying UIP will depend on the provis ...
Protein import into yeast mitochondria van Wilpe, S.
... steady-statee level of the timl 7 R105K mutant protein was reduced to about 50% of the wild type level,, which may be directly due to reduced import efficiency of this mutant protein into mitochondria.. The amount of Tim complex in mitochondria of nine timl 7 R105K mutants variedd from 0 to 100% of ...
... steady-statee level of the timl 7 R105K mutant protein was reduced to about 50% of the wild type level,, which may be directly due to reduced import efficiency of this mutant protein into mitochondria.. The amount of Tim complex in mitochondria of nine timl 7 R105K mutants variedd from 0 to 100% of ...
The evolutionary history of the stearoyl
... this would imply that SCD1 and SCD5 are old paralogues having emerged in vertebrate ancestry as a consequence of 2R. We analysed in detail the gene family content in the immediate proximity of SCD1 and SCD5 genes in the human genome (Figure 2(A)), to determine their duplication and mapping patterns. ...
... this would imply that SCD1 and SCD5 are old paralogues having emerged in vertebrate ancestry as a consequence of 2R. We analysed in detail the gene family content in the immediate proximity of SCD1 and SCD5 genes in the human genome (Figure 2(A)), to determine their duplication and mapping patterns. ...
GraphPAC: Graph Theoretical Identification of Mutated Amino Acid
... amino acids on the very left should have no effect on the reordering position of the amino acids on the right. In order to run the clustering methodology we will describe below, 3 types of data are required. First, you need the amino acid sequence of the protein. Second, you need the protein tertiar ...
... amino acids on the very left should have no effect on the reordering position of the amino acids on the right. In order to run the clustering methodology we will describe below, 3 types of data are required. First, you need the amino acid sequence of the protein. Second, you need the protein tertiar ...
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... actinomycetale family since they are prolific producers of secondary metabolites. Molecular genetic analyses of these organisms have revealed that the genes encoding their secondary metabolite biosynthetic pathways are clustered and range in size from five to greater than 100 kilobases (Malpartida a ...
... actinomycetale family since they are prolific producers of secondary metabolites. Molecular genetic analyses of these organisms have revealed that the genes encoding their secondary metabolite biosynthetic pathways are clustered and range in size from five to greater than 100 kilobases (Malpartida a ...
The HSP90 family of genes in the human genome
... isoforms of HSP90, HSP90AA1 (inducible form) and HSP90AB1 (constitutive form) [1,9,10]. These two isoforms are the result of a gene duplication approximately 500 million years ago [11]. A recent report added another cytosolic isoform to the HSP90 family, HSP90N, which is associated with cellular tra ...
... isoforms of HSP90, HSP90AA1 (inducible form) and HSP90AB1 (constitutive form) [1,9,10]. These two isoforms are the result of a gene duplication approximately 500 million years ago [11]. A recent report added another cytosolic isoform to the HSP90 family, HSP90N, which is associated with cellular tra ...
Proteins and Their Synthesis
... of what is observed in proteins. Also, given any triplet coding for an amino acid, the next triplet could only be one of four. For example, if the first is GGG, ...
... of what is observed in proteins. Also, given any triplet coding for an amino acid, the next triplet could only be one of four. For example, if the first is GGG, ...
Protein Synthesis and the Stress Response
... condition (0.5 mM H2O2) [56]. Despite these reports, it is not clear how tRNA modifications improve survival to oxidative stress. It has been suggested that tRNA modifications increase the efficiency of translation in this condition, which would be necessary to cope with the degradation of proteins ...
... condition (0.5 mM H2O2) [56]. Despite these reports, it is not clear how tRNA modifications improve survival to oxidative stress. It has been suggested that tRNA modifications increase the efficiency of translation in this condition, which would be necessary to cope with the degradation of proteins ...
Chapter 4.32
... traverses the endoplasmic reticulum (ER) and Golgi compartments. In N-glycosylation, a preformed oligosaccharide moiety is transferred en bloc from a long-chain isoprenoid lipid (dolichol) onto the specific N-glycosylation site via an N-glycosidic linkage to the asparagine (Asn) residue of a nascent ...
... traverses the endoplasmic reticulum (ER) and Golgi compartments. In N-glycosylation, a preformed oligosaccharide moiety is transferred en bloc from a long-chain isoprenoid lipid (dolichol) onto the specific N-glycosylation site via an N-glycosidic linkage to the asparagine (Asn) residue of a nascent ...
Document
... The root mean square deviation (RMSD) is the measure of the average distance between the backbones of superimposed proteins. In the study of globular protein conformations, one customarily measures the similarity in three-dimensional structure by the RMSD of the Cα atomic coordinates after optimal r ...
... The root mean square deviation (RMSD) is the measure of the average distance between the backbones of superimposed proteins. In the study of globular protein conformations, one customarily measures the similarity in three-dimensional structure by the RMSD of the Cα atomic coordinates after optimal r ...
AMINO ACIDS, POLYPEPTIDES, AND PROTEINS
... containing a benzene ring is reacted with concentrated nitric acid. (b) Biuret test gives a violet color when dilute is added to an alkaline solution of a peptide or a protein. (c) Ninhydrin test gives a blue solution with all amino acids except proline and hydroxyproline, both of which produce a ye ...
... containing a benzene ring is reacted with concentrated nitric acid. (b) Biuret test gives a violet color when dilute is added to an alkaline solution of a peptide or a protein. (c) Ninhydrin test gives a blue solution with all amino acids except proline and hydroxyproline, both of which produce a ye ...
Identification of psbI and psbL gene products in cyanobacterial
... Photosystem II (PS II) reaction center complex of higher plants was revealed to contain a new low-molecular-mass component of 4.8 kDa encoded by a chloroplast gene, p&I [(1988) FEBS Lett. 241,99-1041, in addition to Dl, D2 and two subunits of cytochrome b-559. Here we isolated a PS II reaction cente ...
... Photosystem II (PS II) reaction center complex of higher plants was revealed to contain a new low-molecular-mass component of 4.8 kDa encoded by a chloroplast gene, p&I [(1988) FEBS Lett. 241,99-1041, in addition to Dl, D2 and two subunits of cytochrome b-559. Here we isolated a PS II reaction cente ...
Nomenclature of the ARID family of DNA
... motif. ARID-containing proteins exhibit a range of cellular functions, including participation in chromatin remodeling, and regulation of gene expression during cell growth, differentiation, and development. A subset of ARID family proteins binds DNA specifically at AT-rich sites; the remainder bind ...
... motif. ARID-containing proteins exhibit a range of cellular functions, including participation in chromatin remodeling, and regulation of gene expression during cell growth, differentiation, and development. A subset of ARID family proteins binds DNA specifically at AT-rich sites; the remainder bind ...
TAK1-binding protein 1 is a pseudophosphatase
... fragment commenced at residue 7 of TAB1. The size of the fragment was estimated by calibrating the gel with marker proteins of known molecular mass, which indicated that the tryptic fragment was likely to terminate at Lys402 . ...
... fragment commenced at residue 7 of TAB1. The size of the fragment was estimated by calibrating the gel with marker proteins of known molecular mass, which indicated that the tryptic fragment was likely to terminate at Lys402 . ...
Rampant Purifying Selection Conserves Positions with
... Posttranslational modifications (PTMs) fine-tune biochemical functions in a large percentage of human proteins (Mann and Jensen 2003; Seo and Lee 2004). In particular, phosphorylation and glycosylation of amino acid positions in thousands of human proteins are now known, many of which have been impl ...
... Posttranslational modifications (PTMs) fine-tune biochemical functions in a large percentage of human proteins (Mann and Jensen 2003; Seo and Lee 2004). In particular, phosphorylation and glycosylation of amino acid positions in thousands of human proteins are now known, many of which have been impl ...
General analysis of observed kinome profiles
... Pyruvate Dehydrogenase (PDH) are associated with decreased PDH activity [25], resulting in a lower conversion of pyruvate to acetyl-CoA necessary to drive the TCA/Krebs cycle [26]. These PDH phosphorylation profiles thus point to reduced substrate feeding into the TCA/Krebs cycle in the presence of ...
... Pyruvate Dehydrogenase (PDH) are associated with decreased PDH activity [25], resulting in a lower conversion of pyruvate to acetyl-CoA necessary to drive the TCA/Krebs cycle [26]. These PDH phosphorylation profiles thus point to reduced substrate feeding into the TCA/Krebs cycle in the presence of ...
Why a need for Systems Biology
... methods. This awareness might lead to better planned experiments if using a mathematical model. Experimental planning! -To include engineers in biology will lead to improved or new highly sophisticated techniques. And more statistical analysis!!! ...
... methods. This awareness might lead to better planned experiments if using a mathematical model. Experimental planning! -To include engineers in biology will lead to improved or new highly sophisticated techniques. And more statistical analysis!!! ...
Amino Acid Sequence and Antigenicity of the Amino
... 19866). However, the considerable costs entailed in growing M . pneumoniae, and the low yield of M . pneumoniae cells and accordingly of the 168 kDa antigen, strongly suggested the need for alternative methods of antigen production. One possibility seemed to be the use of synthetic peptides represen ...
... 19866). However, the considerable costs entailed in growing M . pneumoniae, and the low yield of M . pneumoniae cells and accordingly of the 168 kDa antigen, strongly suggested the need for alternative methods of antigen production. One possibility seemed to be the use of synthetic peptides represen ...
Dicot and monocot plants differ in retinoblastoma
... and negative growth signals to E2F-DP transcription factor activity in order to initiate or stop cell division (Xiao et al., 2003). Pocket proteins interact with a wide range of proteins involved in cellular differentiation and cell cycle control, and probably act as a scaffold to facilitate or brid ...
... and negative growth signals to E2F-DP transcription factor activity in order to initiate or stop cell division (Xiao et al., 2003). Pocket proteins interact with a wide range of proteins involved in cellular differentiation and cell cycle control, and probably act as a scaffold to facilitate or brid ...
evaluation of cirrhosis liver disease via protein-protein
... hepatocyte apoptosis, and leptin resistance are responsible for progression towards inflammation and fibrosis/cirrhosis, (32-36). Peroxisome proliferator-activated receptors (PPARs) regulate a whole spectrum of physiological functions including lipid and glucose metabolism, cholesterol and bile acid ...
... hepatocyte apoptosis, and leptin resistance are responsible for progression towards inflammation and fibrosis/cirrhosis, (32-36). Peroxisome proliferator-activated receptors (PPARs) regulate a whole spectrum of physiological functions including lipid and glucose metabolism, cholesterol and bile acid ...
Protein Solubility as Quality Index for Processed Soybean (PDF
... Protein quality of soybean meal (SBM) is linked to both the reduction of antinutritional factors (ANFs), and the optimization of protein digestibility. Both insufficient- and over-heating result in poor quality SBM. Inadequate heating fails to completely destroy the ANFs, which may have a detrimenta ...
... Protein quality of soybean meal (SBM) is linked to both the reduction of antinutritional factors (ANFs), and the optimization of protein digestibility. Both insufficient- and over-heating result in poor quality SBM. Inadequate heating fails to completely destroy the ANFs, which may have a detrimenta ...
Markers of proliferation and differentiation in human keratinocyte
... Analysis of tissue response Data from keratinocyte monolayers are transposed to RHE : • The role of signaling intermediates and • The activation of particular (stressresponse) signaling pathways are currently under investigation See the work of L.-M. Koeper ...
... Analysis of tissue response Data from keratinocyte monolayers are transposed to RHE : • The role of signaling intermediates and • The activation of particular (stressresponse) signaling pathways are currently under investigation See the work of L.-M. Koeper ...