Identification of a Cis-Acting Element of ART1, a
... transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels. ART1 is a C2H2-type zinc-finger transcription factor and regulates the expression of 31 genes in t ...
... transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels. ART1 is a C2H2-type zinc-finger transcription factor and regulates the expression of 31 genes in t ...
Document
... are needed to see this picture. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. ...
... are needed to see this picture. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. QuickTime™ and a TIFF (Uncompressed) decompressor are needed to see this picture. ...
SPT4, a gene important for tr
... Plasmids. The plasmids pJF17, pJF42, and pBM25 contain subclones of the cloned SPT4 gene in the centromere-containing vector YCp50 (Johnston and Davis 1984) and were used to delimit the SPT4 gene (Fig. 1). The HindIII fragment that contains SPT4 function was cloned in the integrating vector YIp5 (St ...
... Plasmids. The plasmids pJF17, pJF42, and pBM25 contain subclones of the cloned SPT4 gene in the centromere-containing vector YCp50 (Johnston and Davis 1984) and were used to delimit the SPT4 gene (Fig. 1). The HindIII fragment that contains SPT4 function was cloned in the integrating vector YIp5 (St ...
attachment of amino acids to tRNA
... molecules in cell (~40). Each tRNA molecule is attached to a specific amino acids (20) and each recognizes a particular codon, or codons (61), in the mRNA. All tRNAs end with the sequence 5’CCA-3’ at the 3’ end, where the aminoacyl tRNA synthetase adds the amino acid. ...
... molecules in cell (~40). Each tRNA molecule is attached to a specific amino acids (20) and each recognizes a particular codon, or codons (61), in the mRNA. All tRNAs end with the sequence 5’CCA-3’ at the 3’ end, where the aminoacyl tRNA synthetase adds the amino acid. ...
Next Generation Quantitative PCR
... abm’s ExCellenCT Lysis Kit 5X All-In-One RT MasterMix (with ExCellenCT Lysys Kit) ...
... abm’s ExCellenCT Lysis Kit 5X All-In-One RT MasterMix (with ExCellenCT Lysys Kit) ...
Practical Aspects of Estimating Energy Components in
... transcription factor b3, previously identified as a component of the transcription factor IIH core complex, is shown instead to be transcription factor b4 Pathway: Nucleotide excision repair - Homo sapiens (human) (database: KEGG) Pathway: Basal transcription factors - Homo sapiens (human) (database ...
... transcription factor b3, previously identified as a component of the transcription factor IIH core complex, is shown instead to be transcription factor b4 Pathway: Nucleotide excision repair - Homo sapiens (human) (database: KEGG) Pathway: Basal transcription factors - Homo sapiens (human) (database ...
Tricarboxylic Acid Cycle-Dependent Regulation of Staphylococcus
... regulated by environmental/nutritional signals (e.g., nitrogen, iron, and calcium) (47). Because PIA is the most important virulence determinant of S. epidermidis (2, 7, 38, 56, 57, 84), it is not surprising that PIA synthesis is regulated by environmental and nutritional signals (13, 16, 18, 22, 53 ...
... regulated by environmental/nutritional signals (e.g., nitrogen, iron, and calcium) (47). Because PIA is the most important virulence determinant of S. epidermidis (2, 7, 38, 56, 57, 84), it is not surprising that PIA synthesis is regulated by environmental and nutritional signals (13, 16, 18, 22, 53 ...
File
... been circumstantial. However, when combined with the experimental evidence obtained by Griffith and Hershey and Chase, the observation that haploid cells have half the DNA of diploid cells helped to confirm that DNA is indeed the genetic material. 2. d. The phage DNA, not the phage protein, enters t ...
... been circumstantial. However, when combined with the experimental evidence obtained by Griffith and Hershey and Chase, the observation that haploid cells have half the DNA of diploid cells helped to confirm that DNA is indeed the genetic material. 2. d. The phage DNA, not the phage protein, enters t ...
Patent constraints
... ID numbering) that each claimed approximately 2000 sequences, many of which did not have well-characterised functions in 1998 (that can be inferred from the reference list). CIPs have been filed as functions have become clear, and continuations are being kept alive for those for which the functions ...
... ID numbering) that each claimed approximately 2000 sequences, many of which did not have well-characterised functions in 1998 (that can be inferred from the reference list). CIPs have been filed as functions have become clear, and continuations are being kept alive for those for which the functions ...
The Protein Cevalently Linked to the 5'... of Poliovirus RNA by Victor Robert Ambros
... E. Release of VPg from polio RNA in other cell extracts..... 88 F. Glycerol gradient sedimentation of Hela unlinking activity.................................................. 91 G. Magnesium requirement for unlinking activity............. 91 H. Heat stability of Hela unlinking activity............. ...
... E. Release of VPg from polio RNA in other cell extracts..... 88 F. Glycerol gradient sedimentation of Hela unlinking activity.................................................. 91 G. Magnesium requirement for unlinking activity............. 91 H. Heat stability of Hela unlinking activity............. ...
Identity elements in tRNA-mediated transcription
... Fig. 3. Effect of native and chimeric tRNAs on transcription antitermination in the trpE-lacZ fusion. RNA was isolated from L. lactis cells after a growth medium shift as indicated in Methods and used to prepare a Northern blot that was hybridized with a lacZ-specific probe to visualize full length ...
... Fig. 3. Effect of native and chimeric tRNAs on transcription antitermination in the trpE-lacZ fusion. RNA was isolated from L. lactis cells after a growth medium shift as indicated in Methods and used to prepare a Northern blot that was hybridized with a lacZ-specific probe to visualize full length ...
SURVEY AND SUMMARY A profusion of upstream open reading
... polyamine transporter (22,23). The translational regulation of antizyme itself can be considered a special case of regulation through a uORF. In almost all cases antizyme is encoded by two partially overlapping ORFs. Although the biochemical properties of antizyme described above are encoded by the ...
... polyamine transporter (22,23). The translational regulation of antizyme itself can be considered a special case of regulation through a uORF. In almost all cases antizyme is encoded by two partially overlapping ORFs. Although the biochemical properties of antizyme described above are encoded by the ...
Identification and Analysis of Dicer Associated Proteins in
... mechanism of miRNA-mediated repression. Different models were proposed, supporting the idea of translational repression either at the level of initiation or at a post-initiation level. In addition, there is evidence for miRNA-induced mRNA degradation that occurs independently of Agos’ RNase H activi ...
... mechanism of miRNA-mediated repression. Different models were proposed, supporting the idea of translational repression either at the level of initiation or at a post-initiation level. In addition, there is evidence for miRNA-induced mRNA degradation that occurs independently of Agos’ RNase H activi ...
Mini-Series: Modern Metabolic Concepts The Biochemistry of the
... A. suum E1, and fruit fly E1. Only two phosphorylation sites are present in isoform I of A. suum E1 and in Caenorhabditis elegans, and only one site is in plant E1s. Yeast E1 has phosphorylation site 1 in a sequence that can be phosphorylated by bovine PDK; however, PDK is not detected in yeast. Mam ...
... A. suum E1, and fruit fly E1. Only two phosphorylation sites are present in isoform I of A. suum E1 and in Caenorhabditis elegans, and only one site is in plant E1s. Yeast E1 has phosphorylation site 1 in a sequence that can be phosphorylated by bovine PDK; however, PDK is not detected in yeast. Mam ...
488KB - The Doudna Lab - University of California, Berkeley
... Two of the surface mutant proteins we produced contained mutations in a 10-residue loop that we call the positioning loop (residues 391– 401). This loop, part of the first catalytic domain (the RNase IIIa domain), resides directly below the active site at the junction between the platform and RNase ...
... Two of the surface mutant proteins we produced contained mutations in a 10-residue loop that we call the positioning loop (residues 391– 401). This loop, part of the first catalytic domain (the RNase IIIa domain), resides directly below the active site at the junction between the platform and RNase ...
Pseudomon-1 motif
... motif. In contrast, the sequence clustering method in our current pipeline will likely partition the three SAM-IV RNAs into a different cluster from the other COG0520 UTRs, which reduces spurious sequences in the cluster. It should be noted, however, that one drawback to BLAST-based sequence cluster ...
... motif. In contrast, the sequence clustering method in our current pipeline will likely partition the three SAM-IV RNAs into a different cluster from the other COG0520 UTRs, which reduces spurious sequences in the cluster. It should be noted, however, that one drawback to BLAST-based sequence cluster ...
PDF File
... structure of the Tetrahymena intron (Kim and Cech, 1987); this model is shown in Figure 3. To guide the modeling, Kim and Cech used information about residue accessibility from chemical and enzymatic probes, a predilection to place the most conserved elements together in a catalytic core or center, ...
... structure of the Tetrahymena intron (Kim and Cech, 1987); this model is shown in Figure 3. To guide the modeling, Kim and Cech used information about residue accessibility from chemical and enzymatic probes, a predilection to place the most conserved elements together in a catalytic core or center, ...
Function and Control of the Spx-Family of Proteins Within
... gene is called trmA, but this assignment had already been given to the gene encoding a highly conserved tRNA-rRNA methylase in bacteria, including members of the Firmicutes. In B. subtilis, the gene, yjbD (now known as spx), encoding an ArsC-like protein, was observed to be activated by several stre ...
... gene is called trmA, but this assignment had already been given to the gene encoding a highly conserved tRNA-rRNA methylase in bacteria, including members of the Firmicutes. In B. subtilis, the gene, yjbD (now known as spx), encoding an ArsC-like protein, was observed to be activated by several stre ...
Stringent Response in Myxococcus xanthus
... Fruiting body formation Starve for amino acids Accumulation of (p)ppGpp Accumulate (p)ppGpp ??Starve for aa Fruiting bodies Is this a causal relationship? Is there a connection between initiation of fruiting body development and (p)ppGpp accumulation? ...
... Fruiting body formation Starve for amino acids Accumulation of (p)ppGpp Accumulate (p)ppGpp ??Starve for aa Fruiting bodies Is this a causal relationship? Is there a connection between initiation of fruiting body development and (p)ppGpp accumulation? ...
Single Processing Center Models for Human Dicer and Bacterial
... function as a homodimer. Based on an X-ray structure of the Aquifex aeolicus RNase III, models of the enzyme interaction with dsRNA, and its cleavage at two composite catalytic centers, have been proposed. We have generated mutations in human Dicer and Escherichia coli RNase III residues implicated ...
... function as a homodimer. Based on an X-ray structure of the Aquifex aeolicus RNase III, models of the enzyme interaction with dsRNA, and its cleavage at two composite catalytic centers, have been proposed. We have generated mutations in human Dicer and Escherichia coli RNase III residues implicated ...
NTPase/helicase of Flaviviridae: inhibitors and inhibition of the
... et al., 1996) have shown that removal of the NH2-terminal 148 amino acids enhanced the NTPase activity of JEV NTPase/helicase. On the other hand, a comparative study with recombinant full-length NS3 and its isolated NH2- and COOH-terminal domains, performed by Gallinari et al. (1998), did not reveal ...
... et al., 1996) have shown that removal of the NH2-terminal 148 amino acids enhanced the NTPase activity of JEV NTPase/helicase. On the other hand, a comparative study with recombinant full-length NS3 and its isolated NH2- and COOH-terminal domains, performed by Gallinari et al. (1998), did not reveal ...
Molecular Characterisation of the 76 kDa Iron
... Max-Volmer-Institut fur Biophysikalische Chemie und Biochemie, Technische Universitdt Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany ...
... Max-Volmer-Institut fur Biophysikalische Chemie und Biochemie, Technische Universitdt Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany ...
Class I tRNA
... Both 30S and 50S subunits are self-assembled in vitro. In 30S subunit, S4 and S8 bind to 16S rRNA first, other proteins then join sequentially and cooperatively. ...
... Both 30S and 50S subunits are self-assembled in vitro. In 30S subunit, S4 and S8 bind to 16S rRNA first, other proteins then join sequentially and cooperatively. ...
WS Procs 975 x 65
... representation to the Dependency Pattern Sets (DPS) representation. DPS representation is a generalized model of string representation, which can model adjacent nucleotide dependency. Although it has a lower descriptive power than SPSP representation, experimental results on real biological data sho ...
... representation to the Dependency Pattern Sets (DPS) representation. DPS representation is a generalized model of string representation, which can model adjacent nucleotide dependency. Although it has a lower descriptive power than SPSP representation, experimental results on real biological data sho ...
Nucleic Acids - Farmasi Unand
... • Unwinding may start at the end or more commonly in a central section of the DNA helix. It is initiated by the binding of the DNA to specific receptor proteins that have been activated by the appropriate first messenger (see section 8.4). prof. aza ...
... • Unwinding may start at the end or more commonly in a central section of the DNA helix. It is initiated by the binding of the DNA to specific receptor proteins that have been activated by the appropriate first messenger (see section 8.4). prof. aza ...