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A preliminary mutation analysis of phenylketonuria in southwest Iran
A preliminary mutation analysis of phenylketonuria in southwest Iran

... vast majority of patients showed high pre-treatment Phe levels, as well as severe clinical manifestations. This finding could be due to the lack of systematic and comprehensive neonatal screening of PKU in Iran, and consequently the late diagnosis of PKU. Furthermore, insufficient knowledge of paren ...
Fecal DNA Testing - UnitedHealthcareOnline.com
Fecal DNA Testing - UnitedHealthcareOnline.com

... Fecal deoxyribonucleic acid (DNA) testing is designed to detect CRC based on the presence of specific, cancerassociated mutations in DNA extracted from stool samples. A positive test result indicates the need for definitive diagnosis via colonoscopy and biopsy. Researchers are investigating next-gen ...
EOC Review #3 - christophersonbiology
EOC Review #3 - christophersonbiology

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Cloning and characterization of dispersed repetitive DNA derived
Cloning and characterization of dispersed repetitive DNA derived

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The Structure and Function of Nucleic Acids
The Structure and Function of Nucleic Acids

... and this is a cell’s genotypic expression. The genotype is the genetic composition of an organism in terms of the forms of specific genes, i.e. alleles, that it contains, and its study is referred to as molecular genetics. The very fact that a child can resemble one or both parents means that there ...
DNA crosslinking and biological activity of a
DNA crosslinking and biological activity of a

... 4 days, followed by washing and ®xing with 50% cold trichloroacetic acid. Cell growth was quantitated based upon Sulphorhodamine B staining of cellular proteins and absorbance measurements at 570 nm. Inhibition of DNA, RNA and protein synthesis Inhibition of cellular macromolecule synthesis was meas ...
Case study of primary imatinib resistance and correlation of BCR
Case study of primary imatinib resistance and correlation of BCR

... study is capable of detecting one mutated, imatinib-resistant cell out of 10,000 normal cells [21]. In the present study, we found two mutations in a imatinib-resistant CML patient by ASO-PCR. It is the first report of multiple mutations in an imatinib-resistant CML patient. A thymine-to-cytosine mu ...
Vol. 75, No. 5, May 2002 New Laws Reflect the Power and Potential
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... crimes the perpetrator doesn't leave behind any biological evidence that can be tested, the number could be much higher if more care was taken to preserve biological evidence where it does exist. The experience of Innocence Projects4 nationally is that in cases in which postconviction DNA testing mi ...
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Stage 4: Tree-building methods: distance

... four for DNA, so there is a stronger phylogenetic signal. Nucleotides are unordered characters: any one nucleotide can change to any other in one step. An ordered character must pass through one or more intermediate states before reaching the final state. Amino acid sequences are partially ordered c ...
FEMS Microbiology Ecology
FEMS Microbiology Ecology

... (http://fungene.cme.msu.edu/FunGenePipeline). All subsequent analyses were carried out on amino acid sequences, which were normalized to 7005 sequences per sample using again STRAWBERRY PERL 5.12.3.0 and the Perl program selector of the PANGEA pipeline (Giongo et al., 2010). Amino acid sequences wer ...
Site specific insertion of a type I rDNA dement into a unique
Site specific insertion of a type I rDNA dement into a unique

... and of other Type I Elements The organisation of the most common type I insertions is shown in Figure 1. The major rDNA insertion is 5Kb length and is exemplified by the cloned segment DmlO3 [13]. Tandem arrays of type I elements are roughly equally abundant and occur within the heterochromatin flan ...
2. Methods and Data Analysis - National Genetics Reference
2. Methods and Data Analysis - National Genetics Reference

... 1. Direct sequencing of all fragments to identify and characterise variations. For diagnostic purposes all mutations identified would be confirmed in a second test, usually also by sequencing. 2. Pre-screen using an indirect method to determine which fragments harbour sequence variations, followed b ...
Kefir Kommunity - BioQUEST Curriculum Consortium
Kefir Kommunity - BioQUEST Curriculum Consortium

... using GFP labeling to reveal “microgeographic” aspects of this process, if it occurs. from isolates at different geographical Finally, we will develop a “virtual meeting place” for investigators interested in this locations, and before and after changes in phenomenon: “Kamp Kefir.” This site will co ...
Time Dependency of Molecular Rate Estimates and Systematic
Time Dependency of Molecular Rate Estimates and Systematic

... the difference between the two values is indicative of purifying selection, which acts on the majority of nonsynonymous changes (Fay, Wyckoff, and Wu 2001; Holmes 2003). Mutational Hot Spots and Saturation It is known that rates of change can vary substantially among sites and that certain sites app ...
Bioinformatics with basic local alignment search tool (BLAST) and
Bioinformatics with basic local alignment search tool (BLAST) and

... There are twenty known amino acids and a polypeptide chain comprises a number of certain types of amino acids arranged in a definite sequence. This indicates that they could be a great diversity of possible protein sequences. In general, the primary structure of a protein contains all the necessary ...
101. The Role of Rigidity in DNA Looping
101. The Role of Rigidity in DNA Looping

... shown that, in the absence of arabinose, the dimeric AraC protein prefers binding to the well separated I1 and O2 half-sites and forming a DNA loop (1–4), Fig. 1. On the addition of arabinose, the protein’s affinity for the I1 and I2 half-sites increases by about 50-fold, leading the protein to pref ...
Part III: Laboratory – Electrophoresis
Part III: Laboratory – Electrophoresis

... frequencies of recombination between the gene of interest and the genes previously mapped allow the gene of interest to be placed on the map. However, markers for genetic mapping don’t necessarily have to be mutations that cause phenotypic changes. They can also be variations in DNA sequences that a ...
Tasting Phenylthiocarbamide (PTC): A New Integrative
Tasting Phenylthiocarbamide (PTC): A New Integrative

... this question: one that involves using the class allele frequencies to calculate the conditional probability that a taster in the class is either homozygous or heterozygous, and another that adds pedigree analysis to the determination of genotype probabilities. Conditional probabilities are calculat ...
Surveying Saccharomyces Genomes to Identify Functional Elements
Surveying Saccharomyces Genomes to Identify Functional Elements

... Sequence Summary of Saccharomyces Species We obtained sequence from ∼1000 genomic DNA clones from each of four species of the sensu stricto group (Saccharomyces bayanus, Saccharomyces paradoxus, Saccharomyces cariocanus, and Saccharomyces mikatae) (Naumov et al. 2000) and from >2000 clones from each ...
Microbial DNA qPCR Assays
Microbial DNA qPCR Assays

... Vaginal samples positive for Gardnerella vaginalis also show changes in commensal and bacterial vaginosis-related microbes compared to healthy samples. To compare any differences in the vaginal microbiome between healthy women and women with bacterial vaginosis, each sample that tested positive for ...
Microbial DNA qPCR Assays
Microbial DNA qPCR Assays

... Vaginal samples positive for Gardnerella vaginalis also show changes in commensal and bacterial vaginosis-related microbes compared to healthy samples. To compare any differences in the vaginal microbiome between healthy women and women with bacterial vaginosis, each sample that tested positive for ...
Low Levels of Nucleotide Diversity at Homoeologous Adh Loci in
Low Levels of Nucleotide Diversity at Homoeologous Adh Loci in

... and other studies have yielded a number of insights into the factors that shape naturally occurring variation, in any particular case, the evolutionary or historical forces responsible for the diversity patterns observed may be difficult to discern. This is especially true for comparisons between sp ...
From bedside to bench: how to analyze a splicing
From bedside to bench: how to analyze a splicing

... However, it should be borne in mind, that many genetic screens can also result in nucleotide variations whose affect on gene function has yet to be clarified and understood including those that may simply represent a benign polymorphism and not be pathogenic at all. Preliminary work to try and disti ...
tRNA And Protein Building
tRNA And Protein Building

... A mutation, therefore, is a difference from what we consider to be the normal sequence of bases in a molecule of DNA. The difference or error does not have to be very great. As you have just determined, a base sequence of only one triplet (three bases) can cause the formation of the wrong type of he ...
More Taxonomy, Not DNA Barcoding
More Taxonomy, Not DNA Barcoding

... many new species identified by barcoding would not be morphologically distinguishable. The resulting, much larger number of “species” would be a number that means very little. What that number might tell us about actually existing species would have to be intensively investigated, because barcodes c ...
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Microsatellite



A microsatellite is a tract of repetitive DNA in which certain DNA motifs (ranging in length from 2–5 base pairs) are repeated, typically 5-50 times. Microsatellites occur at thousands of locations in the human genome and they are notable for their high mutation rate and high diversity in the population. Microsatellites and their longer cousins, the minisatellites, together are classified as VNTR (variable number of tandem repeats) DNA. The name ""satellite"" refers to the early observation that centrifugation of genomic DNA in a test tube separates a prominent layer of bulk DNA from accompanying ""satellite"" layers of repetitive DNA. Microsatellites are often referred to as short tandem repeats (STRs) by forensic geneticists, or as simple sequence repeats (SSRs) by plant geneticists.They are widely used for DNA profiling in kinship analysis and in forensic identification. They are also used in genetic linkage analysis/marker assisted selection to locate a gene or a mutation responsible for a given trait or disease.
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