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DNA
DNA

...  Eukaryotic chromosomal DNA molecules have special nucleotide sequences at their ends called telomeres  Telomeres do not prevent the shortening of DNA molecules, but they do postpone it  It has been proposed that the shortening of telomeres is connected to aging.  If chromosomes of germ cells be ...
Crystal structure of Cas9 in complex with guide RNA and target DNA
Crystal structure of Cas9 in complex with guide RNA and target DNA

Lecture 34, Apr 23
Lecture 34, Apr 23

... Steps in the Replication of a Molecule of DNA (2) 4. A separate DNA Polymerase 3 (pol III) binds to the short segment of DNA-RNA hybrid double helix of each strand. Each pol III, then begins to prepare a new polydeoxyribonucleotide chain (a new strand of DNA) in the 5’to-3’ direction, starting at t ...
DNA-Based Information Technologies
DNA-Based Information Technologies

"Dot and Slot Blotting of DNA". In: Current Protocols in Molecular
"Dot and Slot Blotting of DNA". In: Current Protocols in Molecular

... carried out to determine the relative abundance of target sequences in the blotted DNA preparations. Dot and slot blots differ only in the geometry of the blot, a series of spots giving a hybridization pattern that is amenable to analysis by densitometric scanning. Samples are usually applied to the ...
Distribution of Chromosome Constitutive
Distribution of Chromosome Constitutive

... of heterochromatin in the genome may be responsible for a type of position effect resulting in activation of normally repressed chromosome segments. The origin of this new heterochromatic region is unknown since the source of such large segments would normally be the sex chromosomes; however, in all ...
PCR
PCR

... Nested PCR – Nested PCR increases the specificity of DNA amplification, by reducing background due to non-specific amplification of DNA. Two sets of primers are being used in two successive PCR reactions. In the first reaction, one pair of primers is used to generate DNA products, which besides the ...
What happened to my DNA Bank sample?
What happened to my DNA Bank sample?

... were taken from the blood and ‘treated’ with a harmless virus. This treatment allows the white blood cells to divide continually, creating an 'everlasting' supply of DNA. After the treatment they were plunged into liquid nitrogen, freezing the cells for storage. We are storing both treated and untre ...
Protocol for archaeal 16S (A16S) rRNA amplification and
Protocol for archaeal 16S (A16S) rRNA amplification and

... of  PCR  uses  locus-­‐specific  primers  with  overhang  adapters  (A2F_Nex  and  519R_Nex).  The  locus-­‐ specific  region  of  the  forward  primer  was  based  on  the  A2F  primer  from  Reysenbach  et  al.(1995),   which  is  specifi ...
slides
slides

... PCR is good for making lots of copies of a specific region of DNA However, it is most effective for smallish pieces of DNA (up to 10 Kb) When scientists want to make copies of large pieces of DNA, they often employ a different technique The advantage of the next technique is that pieces of DNA can b ...
Export To Word
Export To Word

... in different tissues express different genes? A basic notion in biology that most high school students fail to conceptualize is the fact that all cells in the animal or human body contain the same DNA, yet different cells in different tissues express, on the one hand, a set of common genes, and on t ...
Lecture Presentation to accompany Principles of Life
Lecture Presentation to accompany Principles of Life

... When the last primer is removed no DNA synthesis occurs because there is no 3′ end to extend—a single-stranded bit of DNA is left at each end. These are cut after replication and the chromosome is slightly shortened after each cell division. ...
A MICROFLUIDIC CHIP COMBINING DNA EXTRACTION AND
A MICROFLUIDIC CHIP COMBINING DNA EXTRACTION AND

... analytes in saliva correlate well with those found in blood or urine [1]. Bacteria that cause respiratory infections have been found in saliva and it also contains many organisms that are not infectious and can be used as controls [2, 3]. Traditional methods of identifying infectious bacteria rely o ...
What does PCR stand for?
What does PCR stand for?

Student`s guide -
Student`s guide -

... Loading the gel a. Pour slightly more than 10 mL of TBE buffer solution into the gel tank. The liquid should just cover the surface of the gel and flood into the areas at either end. b. Very gently ease the comb from the gel, allowing the buffer solution to fill the wells left behind. Take care no ...
Question 2 (cont.) - Amazon Web Services
Question 2 (cont.) - Amazon Web Services

... Use the SAPS skills tender to appoint additional resources. PCEM contract renewal before expiry date December 2013. Initiate negotiations before end of August 2013 with supplier for Address the lack of procurement vehicle of PCEM related contract renewal. equipment and consumables. Hosting capacity ...
Leukaemia Section i(6)(p10) Atlas of Genetics and Cytogenetics in Oncology and Haematology
Leukaemia Section i(6)(p10) Atlas of Genetics and Cytogenetics in Oncology and Haematology

... childhood acute lymphoblastic leukemia and permits the precise localization of a tumor-suppressor gene distinct from p27KIP1. Blood. 1995 Nov 15;86(10):3869-75 ...
Application and interpretation of FISH in biomarker studies Jane Bayani Mini-review
Application and interpretation of FISH in biomarker studies Jane Bayani Mini-review

... led to the introduction of FISH as early as 1977 [14]. By the late 1980s, FISH was being employed to detect specific chromosomal regions and loci [15] using recombinant libraries, enabling the chromosomal mapping of many genes [16–18] within the human genome. Later in 1992, Kallioniemi et al. [19] in ...
Maxime - Tech Dragon Limited
Maxime - Tech Dragon Limited

STRAND1 - Bulletin - Sigma
STRAND1 - Bulletin - Sigma

... (2 µl) of Strandase for 2-4 µg DNA. • The observed fraction of dsDNA resistant to digestion presumably represents material derived from unphosphorylated primers. Increasing the digestion period or amount of enzyme has little effect on the remaining double-stranded DNA. However, as long as there is a ...
Expanding and understanding the genetic toolbox of the
Expanding and understanding the genetic toolbox of the

... for PCR analysis of integration strains (strains containing both the wild-type and gene-deletion PCR products) and correct deletion mutants. As shown in Figure 1(A), the integration-strain SSOGOI (S. solfataricus GOI) gave the same specific band as found in the plasmid control pET401, which is the b ...
Preimplantation genetic diagnosis: State of the ART 2011
Preimplantation genetic diagnosis: State of the ART 2011

A process for analysis of microarray comparative genomics
A process for analysis of microarray comparative genomics

... the microarray slide. If a gene is conserved in both samples the fluorescence emitted at the corresponding position on the array will be a mixture derived from both labels. If the gene is present in only one sample then only one type of fluorescence will be observed. The use of a reference sample in ...
Organizing Protein Synthesis - Dallastown Area School District Moodle
Organizing Protein Synthesis - Dallastown Area School District Moodle

... If you have brown hair, what makes it brown, as opposed to blonde, or red? o A pigment called______________, a_____________, is what you see as “brown” in the hair. • What makes you tall or short? o The lengths of your bones are made up of a framework of__________________. ...
Multiregional origin of B chromosomes in the grasshopper
Multiregional origin of B chromosomes in the grasshopper

... Chromosome preparations were made from embryo cells, obtained following the technique described in Camacho et al. (1991), or from spermatocytes by the technique described in Cabrero et al. (1999). In order to facilitate probe accessibility for fluorescence in situ hybridization (FISH), each spermato ...
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Comparative genomic hybridization



Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells. The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related, because it is suspected that they contain differences in terms of either gains or losses of either whole chromosomes or subchromosomal regions (a portion of a whole chromosome). This technique was originally developed for the evaluation of the differences between the chromosomal complements of solid tumor and normal tissue, and has an improved resoIution of 5-10 megabases compared to the more traditional cytogenetic analysis techniques of giemsa banding and fluorescence in situ hybridization (FISH) which are limited by the resolution of the microscope utilized.This is achieved through the use of competitive fluorescence in situ hybridization. In short, this involves the isolation of DNA from the two sources to be compared, most commonly a test and reference source, independent labelling of each DNA sample with a different fluorophores (fluorescent molecules) of different colours (usually red and green), denaturation of the DNA so that it is single stranded, and the hybridization of the two resultant samples in a 1:1 ratio to a normal metaphase spread of chromosomes, to which the labelled DNA samples will bind at their locus of origin. Using a fluorescence microscope and computer software, the differentially coloured fluorescent signals are then compared along the length of each chromosome for identification of chromosomal differences between the two sources. A higher intensity of the test sample colour in a specific region of a chromosome indicates the gain of material of that region in the corresponding source sample, while a higher intensity of the reference sample colour indicates the loss of material in the test sample in that specific region. A neutral colour (yellow when the fluorophore labels are red and green) indicates no difference between the two samples in that location.CGH is only able to detect unbalanced chromosomal abnormalities. This is because balanced chromosomal abnormalities such as reciprocal translocations, inversions or ring chromosomes do not affect copy number, which is what is detected by CGH technologies. CGH does, however, allow for the exploration of all 46 human chromosomes in single test and the discovery of deletions and duplications, even on the microscopic scale which may lead to the identification of candidate genes to be further explored by other cytological techniques.Through the use of DNA microarrays in conjunction with CGH techniques, the more specific form of array CGH (aCGH) has been developed, allowing for a locus-by-locus measure of CNV with increased resolution as low as 100 kilobases. This improved technique allows for the aetiology of known and unknown conditions to be discovered.
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