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PPT
PPT

... – Temporal, host-based, geographical Algorithms – Mr. Bayes and ProtML are most consistent in their performance – Too compute-intensive for the larger “macro” sets Observed pattern – All phylograms yielded geographic-based clustering rather than timebased clustering – Host ranges along clustered cla ...
Pre-natal Orofacial Development - Causes of Cleft Lip and Cleft Palate
Pre-natal Orofacial Development - Causes of Cleft Lip and Cleft Palate

... there are four genes that have prominent results in terms of causing clefts when expressions are disrupted; those genes are: Msx1, Tfgb3, Tfap2a, Gabrb3, and their knock outs and transgenic insertions result in CL/P in mice. Studies in mice and chicks have also revealed several syndromic genes invol ...
Supporting Information
Supporting Information

... Candida albicans Cap1p regulon. Eukaryot Cell 8: 806-820. 13. Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for ...
Polyploidy and genome evolution in plants
Polyploidy and genome evolution in plants

... by Blanc and Wolfe [23]. They showed that more than half of the gene pairs formed by the most recent polyploidy have significantly different expression patterns. These authors also provide evidence, from expression divergence and asymmetrical sequence divergence, that 62% (316) of recently duplica ...
Powerpoint template for scientific poster
Powerpoint template for scientific poster

... with broad-spectrum activity which have been successfully used in veterinary medicine and in animal husbandry. Recent research on their outstanding potency for the control of drug-resistant bacteria and cancer stem cells has led to a revived interest in the useful biological activity, highly complex ...
Genetic diversity and phylogenetic classification of viral hemorrhagic
Genetic diversity and phylogenetic classification of viral hemorrhagic

... septicemia virus (VHSV) and to gain insight into the molecular epidemiology of this fish rhabdovirus. The sequences of the nonstructural (NV) protein and the transmembrane (G) protein of sequential North American and European isolates of VHSV were determined and used to compute phylogenetic trees. A ...
Genes and Genomes
Genes and Genomes

...  For eukaryotes, a haploid set of chromosomes  For bacteria, often a single chromosome  For viruses, one or a few DNA or RNA molecules  Genome size is typically reported as the number of base pairs (nucleotide pairs) in one genome complement (i.e. haploid for eukaryotes) ...
SNPs in association studies
SNPs in association studies

...  Good candidate for the causal variant should be linked to relevant biological mechanism. For example it may have effect on gene expression or protein structure/folding.  Functional analysis is needed to prove that (1) SNP change the important biological function, and that (2) alteration of functi ...
SMU-DDE-Assignments-Scheme of Evaluation Q. No
SMU-DDE-Assignments-Scheme of Evaluation Q. No

... Marks ...
Will Entrez Find Every Sequence Record?
Will Entrez Find Every Sequence Record?

... Note that the “Features” field provides useful biological information, and may ...
how snps help researchers find the genetic
how snps help researchers find the genetic

... To understand how invaluable SNPs are in tracking down mutations that cause disease, you have to appreciate the immense size of genome. Consider this: if each of the DNA molecules in our genome was about the size of a ping pong ball, the long unraveled chain of molecules would circle the earth 3 tim ...
Problems 10
Problems 10

... black-bodied. (It is clear that these two markers are linked by observing their inheritance.) 8 pts b) Let H = normal-winged; h = hairy-winged; R = red-eyed; r = white-eyed; B = blackbodied; and b = yellow-bodied. The data indicate that r and b (and R and B) are linked and further that these loci ar ...
How genomic and developmental dynamics affect
How genomic and developmental dynamics affect

... mechanisms responsible for base±base substitutions. These genomic mechanisms are gene conversion, unequal crossingover, slippage, transposition, retrotransposition and so on. They are ubiquitous in all eukaryotic, archaebacterial and prokaryotic genomes and occur at rates that are often several orde ...
Review: RECOMB Satellite Workshop on Regulatory Genomics
Review: RECOMB Satellite Workshop on Regulatory Genomics

... • Although this isn’t a particularly suprising result, many predicted motifs (e.g. from MEME etc.) do not display this TFBS “signature” – could use as a filter, or incorporate it more directly (they’re working on this currently?) ...
MIBiG Annotation Form
MIBiG Annotation Form

... Use this field for the community annotation only, for those pathways for which an accession number was provided to you. E.g., 'BGC0000829'. ...
CH # 17-1
CH # 17-1

... Changes in genes and chromosomes generate variation. For example, all of these children received their genes from the same parents, but they all look different. ...
Location and Characterization of the Bovine Herpesvirus Type 2
Location and Characterization of the Bovine Herpesvirus Type 2

... Apart from the disease caused by BHV-2 this virus is also of interest as it is one of the few nonhuman herpesviruses whose D N A bears nucleotide sequence homology with the HSV-1 genome (Sterz et al., 1973/74). A direct comparison made between the BHV-2 TK gene nucleotide sequence and that of the HS ...
gene_prediction_20040930
gene_prediction_20040930

...  GENEWISE (Birney) is a HMM based gene predictor which attempts to predict the closest CDS to a supplied peptide sequence. This is the workhorse predictor for the ENSEMBL project. ...
17.1 Genes and Variation
17.1 Genes and Variation

... Changes in genes and chromosomes generate variation. For example, all of these children received their genes from the same parents, but they all look different. ...
3. Mapping Epigenetic Seed Genes to Affymatrix
3. Mapping Epigenetic Seed Genes to Affymatrix

... incurred) at each level of p-value to be considered as “significant”. The estimated q-values were given in Suppl. Table 3. Our analysis showed that a cut-off of q-value smaller than 0.02 would identify significant similar pairs of vectors at a zero false discovery rate (Figure A). Step 4: For each s ...
BLAST_tutorial
BLAST_tutorial

... – Search for sequence similarity matches in the Gramene database. – Select the best target database for your search. – Choose the best algorithm for your search. – Fine-tune search parameters. ...
Genomic Maps and Linkage Analysis
Genomic Maps and Linkage Analysis

Bacterial Transformation Lab
Bacterial Transformation Lab

... A gene is a piece of DNA that contains the instructions for making a particular protein; this protein gives an organism a certain trait Some genes can be inserted into organisms to change their traits; this is called . . . TRANSFORMATION ...
ALLIMED CREAM, LIQUID AND CAPSULES
ALLIMED CREAM, LIQUID AND CAPSULES

... CREAM, LIQUID and CAPSULES are available to combat Staph. Aureus. Often involved in cases of acne, eczema and other skin conditions, as well as more serious infections like MRSA. ...
Increased Crop Yield Through Improved Photosynthesis
Increased Crop Yield Through Improved Photosynthesis

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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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