Biofuel Production Through the Metabolic Modeling of
... composes a large portion of plant matter, which is normally degraded by saprophytes via enzymes and fermented into a number of by-products. Current common practice involves a treatment of the cellulose fibers in acid and enzymes followed by fermentation by yeast (ex. Saccharomyces cerevisiae). In or ...
... composes a large portion of plant matter, which is normally degraded by saprophytes via enzymes and fermented into a number of by-products. Current common practice involves a treatment of the cellulose fibers in acid and enzymes followed by fermentation by yeast (ex. Saccharomyces cerevisiae). In or ...
2012_ISCBAsia_IRRI
... Research themes, Bioinformatics & Galaxy • Leveraging the reference genome, datasets are sequencing technology-based o Requires bioinformatics knowledge o Small bioinformatics team at IRRI = • We need to o enable field/bench researchers for bioinformatics o share bioinformatics solutions across GRi ...
... Research themes, Bioinformatics & Galaxy • Leveraging the reference genome, datasets are sequencing technology-based o Requires bioinformatics knowledge o Small bioinformatics team at IRRI = • We need to o enable field/bench researchers for bioinformatics o share bioinformatics solutions across GRi ...
Features and phylogeny of the six compared Plasmodium genomes
... [PlasmoDB, news item from Feb 1, 2008]. Indeed, the first in-depth sequencing-based analysis of the P. falciparum transcriptome using high-throughput sequencing (RNA-Seq) led to the revision of only one out of ten gene models and could not find evidence for new protein-coding genes [5]. Thus, P. fal ...
... [PlasmoDB, news item from Feb 1, 2008]. Indeed, the first in-depth sequencing-based analysis of the P. falciparum transcriptome using high-throughput sequencing (RNA-Seq) led to the revision of only one out of ten gene models and could not find evidence for new protein-coding genes [5]. Thus, P. fal ...
FG-NEMs
... • Perturbation of genes followed by high-throughput profiling of different phenotypes can be used to characterize functions of genes • However, most genes do not function independently but interact in a network to drive a particular function • Phenotypic measurements (e.g. mRNA levels) are indirect ...
... • Perturbation of genes followed by high-throughput profiling of different phenotypes can be used to characterize functions of genes • However, most genes do not function independently but interact in a network to drive a particular function • Phenotypic measurements (e.g. mRNA levels) are indirect ...
Independent specialization of the human and mouse X
... tral X-linked gene, we also analyzed orthologous genes in dog, horse and chicken for comparison. Only a small fraction of the 11.5 Mb of sequence generated, 3.15 Mb comprised X-chromosomal genes (13/144 in humans and 29/197 in mice) that violated Ohno’s amplicons. We estimated the total size of the ...
... tral X-linked gene, we also analyzed orthologous genes in dog, horse and chicken for comparison. Only a small fraction of the 11.5 Mb of sequence generated, 3.15 Mb comprised X-chromosomal genes (13/144 in humans and 29/197 in mice) that violated Ohno’s amplicons. We estimated the total size of the ...
GenRate: A Generative Model That Finds and Scores New Genes
... technology. Two general strategies have emerged. In the first, candidate elements (e.g. ORFs, genes, exons, RNAs) are identified computationally, and each is represented one or a few times on the array 10,12,4 . In the second, the entire genome sequence is ”tiled”; for example, overlapping oligonucl ...
... technology. Two general strategies have emerged. In the first, candidate elements (e.g. ORFs, genes, exons, RNAs) are identified computationally, and each is represented one or a few times on the array 10,12,4 . In the second, the entire genome sequence is ”tiled”; for example, overlapping oligonucl ...
PowerPoint Presentation - Gene Linkage and Genetic Mapping
... differences in the number of copies of a short DNA sequence that may be repeated many times in tandem at a particular site in a chromosome • When a DNA molecule is cleaved with a restriction endonuclease that cleaves at sites flanking the tandem repeat, the size of the DNA fragment produced is deter ...
... differences in the number of copies of a short DNA sequence that may be repeated many times in tandem at a particular site in a chromosome • When a DNA molecule is cleaved with a restriction endonuclease that cleaves at sites flanking the tandem repeat, the size of the DNA fragment produced is deter ...
psy236:(biopsychology(and(learning
... behaviours(as(the(result(of(being(paired(with(an(aversive(US.( • We(can(measure(conditioned(fear(responses(in(two(ways:(( 1. Movement(ratio:(the(proportion(of(time(during(each(presentation(o(the(CS( that(Sniffy(is(manifesting(freezing(and(other(fearArelated(responses.( 2. Suppression(ratio:(requires ...
... behaviours(as(the(result(of(being(paired(with(an(aversive(US.( • We(can(measure(conditioned(fear(responses(in(two(ways:(( 1. Movement(ratio:(the(proportion(of(time(during(each(presentation(o(the(CS( that(Sniffy(is(manifesting(freezing(and(other(fearArelated(responses.( 2. Suppression(ratio:(requires ...
The Strength and Limitations of the Use of Transgenic and
... normal development and function and in disease. Due largely to the availability of thousands of different types of genetically engineered animals, mice are now the most commonly used species in biomedical research. Here, we discuss the strengths and limitations of genetically engineered mice, and pr ...
... normal development and function and in disease. Due largely to the availability of thousands of different types of genetically engineered animals, mice are now the most commonly used species in biomedical research. Here, we discuss the strengths and limitations of genetically engineered mice, and pr ...
Detection and Characterization of Infectious Laryngotracheitis Virus
... Graham et al, 2000). Due to their potential infectious nature, live vaccines are often prohibited in countries (such as EcuaFigure 1. Nucleic acid sequence of ICP4 gene from field and vacdor), where ILT is cine strains. All DNA sequences were obtained from GenBank except considered exotic. In for th ...
... Graham et al, 2000). Due to their potential infectious nature, live vaccines are often prohibited in countries (such as EcuaFigure 1. Nucleic acid sequence of ICP4 gene from field and vacdor), where ILT is cine strains. All DNA sequences were obtained from GenBank except considered exotic. In for th ...
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism
... (EcoCyc) is a database (DB) that combines information about the genome and the intermediary metabolism of E.coli K-12. The DB describes most known genes of E.coli, the enzymes of smallmolecule metabolism that are encoded by these genes, the reactions catalyzed by each enzyme, and the organization of ...
... (EcoCyc) is a database (DB) that combines information about the genome and the intermediary metabolism of E.coli K-12. The DB describes most known genes of E.coli, the enzymes of smallmolecule metabolism that are encoded by these genes, the reactions catalyzed by each enzyme, and the organization of ...
טקס חלוקת מלגות ע"ש אורן ברקו ז"ל 2006
... Synechococcus types including 4 new genotypes, but a rather uniform Prochlorococcus population exhibiting one genotype was found in the surface waters of the Gulf of Eilat. A multi-annual survey identified certain Synechococcus genotypes as generalists being present year around. Other genotypes show ...
... Synechococcus types including 4 new genotypes, but a rather uniform Prochlorococcus population exhibiting one genotype was found in the surface waters of the Gulf of Eilat. A multi-annual survey identified certain Synechococcus genotypes as generalists being present year around. Other genotypes show ...
Networks: expanding evolutionary thinking
... textbooks. It currently dominates the recognition and interpretation of patterns in genetic data. However, many patterns in these data cannot be represented accurately by a tree. The evolution of genes in viruses and prokaryotes, of genomes in all organisms, and the inevitable noise that creeps into ...
... textbooks. It currently dominates the recognition and interpretation of patterns in genetic data. However, many patterns in these data cannot be represented accurately by a tree. The evolution of genes in viruses and prokaryotes, of genomes in all organisms, and the inevitable noise that creeps into ...
Genomic structure and promoter analysis of pathogen-induced genes from
... to pore formation in the midgut cells, and also after infection with baculovirus; Herrero et al., 2007). The capacity of the upstream sequence of repat1 to drive gene transcription in midgut-derived cells (HzGUT), but not in ovary-derived cells (Sf21), is in agreement with a previous observation tha ...
... to pore formation in the midgut cells, and also after infection with baculovirus; Herrero et al., 2007). The capacity of the upstream sequence of repat1 to drive gene transcription in midgut-derived cells (HzGUT), but not in ovary-derived cells (Sf21), is in agreement with a previous observation tha ...
Human Genetics and Biotechnology
... • Linkage can be assessed by determining how often crossingover occurs between two genes on the same chromosome. – Genes on different (non-homologous) chromosomes are not linked. They assort independently during meiosis, so they have a 50 percent chance of ending up in different gametes. – If genes ...
... • Linkage can be assessed by determining how often crossingover occurs between two genes on the same chromosome. – Genes on different (non-homologous) chromosomes are not linked. They assort independently during meiosis, so they have a 50 percent chance of ending up in different gametes. – If genes ...
Human Genetics and Biotechnology
... • Linkage can be assessed by determining how often crossingover occurs between two genes on the same chromosome. – Genes on different (non-homologous) chromosomes are not linked. They assort independently during meiosis, so they have a 50 percent chance of ending up in different gametes. – If genes ...
... • Linkage can be assessed by determining how often crossingover occurs between two genes on the same chromosome. – Genes on different (non-homologous) chromosomes are not linked. They assort independently during meiosis, so they have a 50 percent chance of ending up in different gametes. – If genes ...
Potential Transcriptional Biomarkers in Human Transplant Renal
... unpaired at two time points were used for validating differentially expressed genes, and identifying potential biomarkers by quantitative RT-PCR (qPCR). Differentially expressed genes were also further correlated with renal function and histology at late time points up to 24 months. Results: The ove ...
... unpaired at two time points were used for validating differentially expressed genes, and identifying potential biomarkers by quantitative RT-PCR (qPCR). Differentially expressed genes were also further correlated with renal function and histology at late time points up to 24 months. Results: The ove ...
Gene models - Wheat Training
... prerequisite to obtaining high quality gene models: the models can only be as good as the assembly they are based on. Transcriptome data and gene models from related species are often used to help define correct gene models in a species. As with genome assemblies it is vital for researchers using ge ...
... prerequisite to obtaining high quality gene models: the models can only be as good as the assembly they are based on. Transcriptome data and gene models from related species are often used to help define correct gene models in a species. As with genome assemblies it is vital for researchers using ge ...
Folie 1 - Tresch Group
... Genetic interactions from one intervention One hand clapping can be applied to: Microarray data, Pol II ChIP data, nascent RNA data Application to a similar dataset leads to similar results: 3 stress responses: osmotic stress NaCl, osmotic stress KCl, ...
... Genetic interactions from one intervention One hand clapping can be applied to: Microarray data, Pol II ChIP data, nascent RNA data Application to a similar dataset leads to similar results: 3 stress responses: osmotic stress NaCl, osmotic stress KCl, ...