Structural Genomics Analysis
... completely sequenced genomes, focusing on the patterns of fold usage and trying to identify structural characteristics of typical and atypical folds. We assigned folds to sequences using PSI-blast, run with a systematic protocol to reduce the amount of computational overhead. On average, folds could ...
... completely sequenced genomes, focusing on the patterns of fold usage and trying to identify structural characteristics of typical and atypical folds. We assigned folds to sequences using PSI-blast, run with a systematic protocol to reduce the amount of computational overhead. On average, folds could ...
The Development of a Genetic Marker for Resistance to Fescue
... they were weaned (January) until they were shipped to feedlots (July). Steers were weighed monthly during April, May and June. Also, in June a single blood sample was taken for the analysis of circulating serum prolactin concentrations. Each animal was also scored on their hair coat using a common s ...
... they were weaned (January) until they were shipped to feedlots (July). Steers were weighed monthly during April, May and June. Also, in June a single blood sample was taken for the analysis of circulating serum prolactin concentrations. Each animal was also scored on their hair coat using a common s ...
localization of histone gene transcripts in newt lampbrush
... chromosomes' lateral loops depends on sequence purity of the labelled probe. The recent availability of short DNA sequences cloned in plasmid or bacteriophage vectors has made possible the production, by nick-translation, of labelled probes of great sequence purity. Such probes, after denaturation, ...
... chromosomes' lateral loops depends on sequence purity of the labelled probe. The recent availability of short DNA sequences cloned in plasmid or bacteriophage vectors has made possible the production, by nick-translation, of labelled probes of great sequence purity. Such probes, after denaturation, ...
Filtering Restriction Fragment Size on Affymetrix SNP Arrays
... Question: What should I use for min & max values? Unfortunately, there are not universal answers that apply to all cases. In general, you should monitor the distribution of the fragments on agarose gels prior to hybridization on the array and use the size information from the gels to optimize the li ...
... Question: What should I use for min & max values? Unfortunately, there are not universal answers that apply to all cases. In general, you should monitor the distribution of the fragments on agarose gels prior to hybridization on the array and use the size information from the gels to optimize the li ...
Microbiome assessment- pretest
... c. The types of microbes living on cell phones reflect the same types of microbes living on the skin of their owners. d. Different cell phones have different abiotic (non-‐living) factors. These factors ...
... c. The types of microbes living on cell phones reflect the same types of microbes living on the skin of their owners. d. Different cell phones have different abiotic (non-‐living) factors. These factors ...
Analysis of clones carrying repeated DNA sequences in two YAC
... First, a set of overlapping cosmid clones has been assembled into 750 contigs covering 90-95% of the genome (Hauge et a/., 1991). Second, efforts are underway to construct overlapping YAC contigs for the five Arabidopsis chromosomes. The three YAC libraries commonly in use are the EG (Grill and Some ...
... First, a set of overlapping cosmid clones has been assembled into 750 contigs covering 90-95% of the genome (Hauge et a/., 1991). Second, efforts are underway to construct overlapping YAC contigs for the five Arabidopsis chromosomes. The three YAC libraries commonly in use are the EG (Grill and Some ...
How were introns inserted into nuclear genes?
... A group II intron could mutate into a classical intron. (a) Proposed sequence of about intron insertion19, and group I events. (b) Example of a group II intron (from Ref. 22) which would have introns are now known to insert then> classical splice signals given a single-base mutation ('). selves (see ...
... A group II intron could mutate into a classical intron. (a) Proposed sequence of about intron insertion19, and group I events. (b) Example of a group II intron (from Ref. 22) which would have introns are now known to insert then> classical splice signals given a single-base mutation ('). selves (see ...
The Incompatible Desiderata of Gene Cluster Properties
... that is known is often based (somewhat circularly) on inferred homology of chromosomal segments. The properties underlying existing cluster definitions are generally not stated, and the dimensions along which they differ have been analyzed in only a cursory manner. As a result, the formal tradeoffs ...
... that is known is often based (somewhat circularly) on inferred homology of chromosomal segments. The properties underlying existing cluster definitions are generally not stated, and the dimensions along which they differ have been analyzed in only a cursory manner. As a result, the formal tradeoffs ...
620 024. B.Sc. Microbiology Course Structure under CBCS
... The passing minimum for CIA shall be 40% out of 25 marks [i.e. 10 marks] The passing minimum for University Examinations shall be 40% out of 75 marks [ i.e. 30 marks] ...
... The passing minimum for CIA shall be 40% out of 25 marks [i.e. 10 marks] The passing minimum for University Examinations shall be 40% out of 75 marks [ i.e. 30 marks] ...
Catabolic Plasmids - UQ eSpace
... system which detects the substrates of the degradative pathway. The regulatory genes, and sometimes the degradative genes, are expressed constitutively at a low level, but in the presence of substrate they activate the transcription of the degradative genes as well as enhancing their own expression. ...
... system which detects the substrates of the degradative pathway. The regulatory genes, and sometimes the degradative genes, are expressed constitutively at a low level, but in the presence of substrate they activate the transcription of the degradative genes as well as enhancing their own expression. ...
A G to C mutation in the CRYGD gamma crystallin gene associated
... positional candidate genes; most genes have been identified using this strategy. A second approach has been to screen DNA from large panels of patients with inherited cataract for mutation in the many candidate genes available [6]. In the low and middle income countries, an awareness for the need fo ...
... positional candidate genes; most genes have been identified using this strategy. A second approach has been to screen DNA from large panels of patients with inherited cataract for mutation in the many candidate genes available [6]. In the low and middle income countries, an awareness for the need fo ...
B-Bolivia, an Allele of the Maize b1 Gene with Variable Expression
... stocks produced no pigmented kernels. Monitoring plant pigmentation demonstrated that B-Bolivia is transmitted through both the male and female gametes. Colorless seeds from the reciprocal crosses produced as darkly pigmented plants as colored seeds with no consistent differences in plant pigmentati ...
... stocks produced no pigmented kernels. Monitoring plant pigmentation demonstrated that B-Bolivia is transmitted through both the male and female gametes. Colorless seeds from the reciprocal crosses produced as darkly pigmented plants as colored seeds with no consistent differences in plant pigmentati ...
An Efficient Algorithm for Discovering Motifs in Large DNA
... A few new algorithms [18], [19] are designed either based on suffix tree or De Bruijn graph, but they show poor time performance with the increase of and . Although DREME [20] can analyze very large data sets in minutes, it can only find short motifs. To process full-size ChIP-seq data sets efficiently ...
... A few new algorithms [18], [19] are designed either based on suffix tree or De Bruijn graph, but they show poor time performance with the increase of and . Although DREME [20] can analyze very large data sets in minutes, it can only find short motifs. To process full-size ChIP-seq data sets efficiently ...
Clustering of mandibular organ-inhibiting hormone and moult
... continuous regions of 8.5 kb from a representative group 1 clone (l1) and 4.3 kb from a representative group 4 clone (l12) were determined and are compared in Fig. 3. The results show that there are three exons and two introns in all MIH and MO-IH genes analysed ( Figs. 2 and 3). Exons 1 and 2 conta ...
... continuous regions of 8.5 kb from a representative group 1 clone (l1) and 4.3 kb from a representative group 4 clone (l12) were determined and are compared in Fig. 3. The results show that there are three exons and two introns in all MIH and MO-IH genes analysed ( Figs. 2 and 3). Exons 1 and 2 conta ...
TEL Gene Is Involved in Myelodysplastic Syndromes
... A 1,241-bp TEL cDNA was obtained containing the complete coding sequence. The sequence of this cDNA was identical to the published one.I3 The cDNA was used to screen a chromosome 12 cosmid library. Ten cosmids were obtained and characterized by Southern hybridization with restriction fragments of th ...
... A 1,241-bp TEL cDNA was obtained containing the complete coding sequence. The sequence of this cDNA was identical to the published one.I3 The cDNA was used to screen a chromosome 12 cosmid library. Ten cosmids were obtained and characterized by Southern hybridization with restriction fragments of th ...
Methods for detection of point mutations
... nucleic acids form secondary structures in solution. The secondary structure depends on the base composition and may be altered by a single nucleotide exchange, causing differences in electrophoretic mobility under nondenaturing conditions [11]. Modifications. Initially, SSCP was described for the a ...
... nucleic acids form secondary structures in solution. The secondary structure depends on the base composition and may be altered by a single nucleotide exchange, causing differences in electrophoretic mobility under nondenaturing conditions [11]. Modifications. Initially, SSCP was described for the a ...
In Silico method for identification of MHC class I
... pig, dog) are highly consistent with the published data. Overall, when applied to species that have not been studied before, we find a highly variable number of CD1 genes and only one or two MR1 genes. The variability in size of the CD1 loci is in line with the sizes of the CD1 family indicated by ...
... pig, dog) are highly consistent with the published data. Overall, when applied to species that have not been studied before, we find a highly variable number of CD1 genes and only one or two MR1 genes. The variability in size of the CD1 loci is in line with the sizes of the CD1 family indicated by ...
18.4 Bacteria and Archaea
... – obligate anaerobes are poisoned by oxygen – obligate aerobes need oxygen – facultative aerobes can live with or without oxygen ...
... – obligate anaerobes are poisoned by oxygen – obligate aerobes need oxygen – facultative aerobes can live with or without oxygen ...
PhenoLink - a web-tool for linking phenotype Lactobacillus plantarum strains
... technologies allows revealing cellular mechanisms underlying an organism’s phenotype. ~Omics datasets are often very large and noisy with many features (e.g., genes, metabolite abundances). Thus, associating phenotypes to ~omics data requires an approach that is robust to noise and can handle large ...
... technologies allows revealing cellular mechanisms underlying an organism’s phenotype. ~Omics datasets are often very large and noisy with many features (e.g., genes, metabolite abundances). Thus, associating phenotypes to ~omics data requires an approach that is robust to noise and can handle large ...
Enlis Genome Research - Release Notes
... - Variation Filter tool: Added filter for DANN predicted deleterious variations, with the option to select different score levels - Variation Filter tool: Added "Ignore No-call positions" to "Not in single genome" and "Not in genome set" filters. This allows for improved comparisons between genomes ...
... - Variation Filter tool: Added filter for DANN predicted deleterious variations, with the option to select different score levels - Variation Filter tool: Added "Ignore No-call positions" to "Not in single genome" and "Not in genome set" filters. This allows for improved comparisons between genomes ...
The relevance of gene transfer to the safety of food and feed derived
... of bacteria to new environments than the alteration of gene function through point mutations. It is likely that in early evolution, horizontal gene transfer was pervasive and that it was dominating the evolutionary dynamics. Ancient cells were simpler and more modular in design than are modern cells ...
... of bacteria to new environments than the alteration of gene function through point mutations. It is likely that in early evolution, horizontal gene transfer was pervasive and that it was dominating the evolutionary dynamics. Ancient cells were simpler and more modular in design than are modern cells ...
Nucleotide sequence and taxonomic value of the
... important for maintaining the structural integrity of the infectious EB in the absence of cross-linking by peptidoglycan (Bavoil et al., 1984). Disulphide interlinking between MOMP polypeptide chains is thought to play an important role in regulating MOMP porin function, nutrient ingress through the ...
... important for maintaining the structural integrity of the infectious EB in the absence of cross-linking by peptidoglycan (Bavoil et al., 1984). Disulphide interlinking between MOMP polypeptide chains is thought to play an important role in regulating MOMP porin function, nutrient ingress through the ...
カイコの油蚕変異体に関する
... proteins encoded in each genome found a single homolog (E-value < 0.01) for all the 15 species. Conversely, the BLASTP searches against the B. mori genome using the 15 homologs as queries hit only one protein, Bmdysb, respectively (E-value < 0.01). The overall amino acid sequence of Bmdysb showed 2 ...
... proteins encoded in each genome found a single homolog (E-value < 0.01) for all the 15 species. Conversely, the BLASTP searches against the B. mori genome using the 15 homologs as queries hit only one protein, Bmdysb, respectively (E-value < 0.01). The overall amino acid sequence of Bmdysb showed 2 ...
Analysis of Cross Sequence Similarities for Multiple - PolyU
... engineering, forensics and anthropology. We can see that the size of the databases storing DNA, RNA and amino-acid sequences is increasing exponentially (Matsumoto et al., 2000). As an example, the lengths of the 24 chromosomes in human are found to have 50 to 250 million base pairs (Human Genome Pr ...
... engineering, forensics and anthropology. We can see that the size of the databases storing DNA, RNA and amino-acid sequences is increasing exponentially (Matsumoto et al., 2000). As an example, the lengths of the 24 chromosomes in human are found to have 50 to 250 million base pairs (Human Genome Pr ...
Supplemental Table 1 and Figure Legends
... obtained from samples containing 100 ng of RNA extracted from MDA-MB-468 cells considered as benchmarks and correlated with intensities obtained in profiles using decreasing RNA inputs, respectively 10 ng, 1 ng and 0.5 ng. Panel B. Eulero-Venn diagrams highlighting the numbers of common and exclusiv ...
... obtained from samples containing 100 ng of RNA extracted from MDA-MB-468 cells considered as benchmarks and correlated with intensities obtained in profiles using decreasing RNA inputs, respectively 10 ng, 1 ng and 0.5 ng. Panel B. Eulero-Venn diagrams highlighting the numbers of common and exclusiv ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.