18.4 Bacteria and Archaea
... • Prokaryotes can be grouped by their need for oxygen. – obligate aerobes are need oxygen – facultative aerobes can live with or without oxygen – obligate anaerobes are poisoned by oxygen ...
... • Prokaryotes can be grouped by their need for oxygen. – obligate aerobes are need oxygen – facultative aerobes can live with or without oxygen – obligate anaerobes are poisoned by oxygen ...
genomebiology.com
... © 2010 Sela et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original wo ...
... © 2010 Sela et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original wo ...
comparing quantitative trait loci and gene expression data
... measures are available. This method also has good performance except at the ends of some chromosomes. Any QTL with a span that extends beyond the end of a chromosome is truncated. No obvious matches between the QTL set and the NA genes can be seen in Figure 1. The visual impression does not support ...
... measures are available. This method also has good performance except at the ends of some chromosomes. Any QTL with a span that extends beyond the end of a chromosome is truncated. No obvious matches between the QTL set and the NA genes can be seen in Figure 1. The visual impression does not support ...
BIOLOGICAL AND MOLECULAR CHARACTERIZATION OF THE
... however several isolates especially from Asia separated them. Isolate Zuy was also in group A, but formed a common branch with two Chinese isolates. Finally, isolate Zug was clustered with other Chinese isolates within group B. Similar tree topology was obtained when amino acid alignments were used ...
... however several isolates especially from Asia separated them. Isolate Zuy was also in group A, but formed a common branch with two Chinese isolates. Finally, isolate Zug was clustered with other Chinese isolates within group B. Similar tree topology was obtained when amino acid alignments were used ...
High-resolution haplotype structure in the human genome
... The structure of LD described here has important implications for the analysis of LD, for association studies to find medically relevant variation, for population genetics, and for the next steps of the Human Genome Project. Focusing on haplotype blocks greatly clarifies LD analyses. Once the haplot ...
... The structure of LD described here has important implications for the analysis of LD, for association studies to find medically relevant variation, for population genetics, and for the next steps of the Human Genome Project. Focusing on haplotype blocks greatly clarifies LD analyses. Once the haplot ...
Specific Combinations of Zein Genes and Genetic Backgrounds
... (Aukerman et al., 1991) and by screening analysis of genetic stocks within the collections of different laboratories (Bernard et al., 1994). Apart from those recently induced by insertion elements (Schmidt et al., 1987; Motto et al., 1988; Aukerman and Schmidt, 1993), the remaining o2 alleles fall i ...
... (Aukerman et al., 1991) and by screening analysis of genetic stocks within the collections of different laboratories (Bernard et al., 1994). Apart from those recently induced by insertion elements (Schmidt et al., 1987; Motto et al., 1988; Aukerman and Schmidt, 1993), the remaining o2 alleles fall i ...
DNA-sensing inflammasomes: regulation of bacterial host defense
... Akira 2010). PRRs recognize conserved microbial motifs known as pathogen-associated molecular patterns (PAMPs), including lipopolysaccharides (LPS), lipoproteins, flagellin, microbial DNA, RNA, metabolites and toxins. They also detect dangerassociated molecular patterns (DAMPs) released from damaged ...
... Akira 2010). PRRs recognize conserved microbial motifs known as pathogen-associated molecular patterns (PAMPs), including lipopolysaccharides (LPS), lipoproteins, flagellin, microbial DNA, RNA, metabolites and toxins. They also detect dangerassociated molecular patterns (DAMPs) released from damaged ...
Models of Selection, Isolation, and Gene Flow in Speciation
... An important problem in biodiversity research is to understand the ecological and evolutionary origins of reproductive isolation and the formation of biological species (Coyne and Orr, 2004; Hey et al., 2005). Although diversity evolves at both higher and lower levels in the hierarchy of life, the a ...
... An important problem in biodiversity research is to understand the ecological and evolutionary origins of reproductive isolation and the formation of biological species (Coyne and Orr, 2004; Hey et al., 2005). Although diversity evolves at both higher and lower levels in the hierarchy of life, the a ...
Coordination of replication and transcription along a Drosophila
... et al. 2002) replication timing studies using incomplete arrays of cDNAs have demonstrated a correlation between time of replication and the probability that a specific gene is expressed, it remained to be determined what step(s) in the replication initiation process are influenced by transcription. ...
... et al. 2002) replication timing studies using incomplete arrays of cDNAs have demonstrated a correlation between time of replication and the probability that a specific gene is expressed, it remained to be determined what step(s) in the replication initiation process are influenced by transcription. ...
Plant centromeres: structure and control Eric J Richards and R Kelly
... controlling sister chromatid adhesion and driving chromosome movement. Despite their importance, centromeres remain poorly understood, especially in multicellular eukaryotes with large chromosomes. One of the themes developing from work on centromeres in humans and Drosophila is that the centromeric ...
... controlling sister chromatid adhesion and driving chromosome movement. Despite their importance, centromeres remain poorly understood, especially in multicellular eukaryotes with large chromosomes. One of the themes developing from work on centromeres in humans and Drosophila is that the centromeric ...
Directions for Use Taq DNA Polymerase, 500U
... What is the source of AMRESCO’s UNG? The recombinant cod UNG is produced in an ung negative E. coli strain and is designed to replace the native UNG enzyme originating in Atlantic cod (Gadus morhua). What is the stability of recombinant cod UNG? UNG can tolerate multiple freeze-thaw cycles. It may a ...
... What is the source of AMRESCO’s UNG? The recombinant cod UNG is produced in an ung negative E. coli strain and is designed to replace the native UNG enzyme originating in Atlantic cod (Gadus morhua). What is the stability of recombinant cod UNG? UNG can tolerate multiple freeze-thaw cycles. It may a ...
β-Scruin, a homologue of the actin crosslinking protein scruin, is
... homolog in C. elegans (Wilson et al., 1994), expressed sequence tags (ESTs) for kelch and MIPP in humans (Adams et al., 1993a,b), galactose oxidase in fungi (Ito et al., 1994), and four ORFs in the genome of poxviruses (Massung et al., 1994; Senkevich et al., 1993). The atomic structure of galactose ...
... homolog in C. elegans (Wilson et al., 1994), expressed sequence tags (ESTs) for kelch and MIPP in humans (Adams et al., 1993a,b), galactose oxidase in fungi (Ito et al., 1994), and four ORFs in the genome of poxviruses (Massung et al., 1994; Senkevich et al., 1993). The atomic structure of galactose ...
The Lipopolysaccharide of Bordetella bronchiseptica Ac
... bronchiseptica to have high resistance to CPs compared to bacteria of other genera ...
... bronchiseptica to have high resistance to CPs compared to bacteria of other genera ...
somatic hypermutation of the 5' noncoding region of the Frequent MARTINOrrI*t,
... NHL including 73% DLCL and 47% FL. Since this region was previously shown to be involved in chromosomal rearrangements in a smaller fraction of the same tumors (33% DLCL, 0% FL; Fig. 3), our findings indicate that the same domain of the BCL6 gene can be altered by different types of alterations. Mut ...
... NHL including 73% DLCL and 47% FL. Since this region was previously shown to be involved in chromosomal rearrangements in a smaller fraction of the same tumors (33% DLCL, 0% FL; Fig. 3), our findings indicate that the same domain of the BCL6 gene can be altered by different types of alterations. Mut ...
Comparative and Functional Genomic Analysis of Prokaryotic Nickel
... archaeal genomes, we failed to identify candidate NikR-binding sites. Surprisingly, two other Pyrococcus species (P. abyssi and P. horikoshii) lack homologs of known nickel transporters, and the search for similar NikR sites could not identify candidate NikR targets in their genomes. Though the stru ...
... archaeal genomes, we failed to identify candidate NikR-binding sites. Surprisingly, two other Pyrococcus species (P. abyssi and P. horikoshii) lack homologs of known nickel transporters, and the search for similar NikR sites could not identify candidate NikR targets in their genomes. Though the stru ...
Novel Blocked-Cleavable Primers for Quantitative Detection of
... Improved Specificity: SNP Detection Single nucleotide polymorphisms (SNPs) are common and often correlate with important biological traits. The ability to accurately discriminate between different alleles is critical for modern diagnostics. A mismatch at or near the RNA base has a large effect on th ...
... Improved Specificity: SNP Detection Single nucleotide polymorphisms (SNPs) are common and often correlate with important biological traits. The ability to accurately discriminate between different alleles is critical for modern diagnostics. A mismatch at or near the RNA base has a large effect on th ...
ANOVA and the Bootstrap - Computational Diagnostics Group
... Question of interest: Which genes in our experiment of show gene-specific effects? The argument will be based on the 99% confidence interval for the contrast ak and bk. • There are simultaneously 12625 statistics of interest, one for each. • What is an appropriate procedure to sample realisations t ...
... Question of interest: Which genes in our experiment of show gene-specific effects? The argument will be based on the 99% confidence interval for the contrast ak and bk. • There are simultaneously 12625 statistics of interest, one for each. • What is an appropriate procedure to sample realisations t ...
Extensive tRNA gene changes in synthetic Brassica
... potential effect of tRNA gene variation on the genome. Our results showed that tRNA gene variation during allopolyploidization did not appear to have a genotypic basis and tended to be located in AT-rich regions, displaying a discrete pattern when compared to other types of sequence variation. This ...
... potential effect of tRNA gene variation on the genome. Our results showed that tRNA gene variation during allopolyploidization did not appear to have a genotypic basis and tended to be located in AT-rich regions, displaying a discrete pattern when compared to other types of sequence variation. This ...
Isolation and characterization of a repeated sequence (RPS1) of
... into the EcoRI site of pUC18. The insert sizes were checked by EcoRI digestion, and a plasmid, pSI3-12, containing a 2.1 kb fragment was obtained. This fragment probe gave similar hybridization profiles as the FC 18 chromosome6 probe (Fig. 16). This suggested that the high-intensity signals obtained ...
... into the EcoRI site of pUC18. The insert sizes were checked by EcoRI digestion, and a plasmid, pSI3-12, containing a 2.1 kb fragment was obtained. This fragment probe gave similar hybridization profiles as the FC 18 chromosome6 probe (Fig. 16). This suggested that the high-intensity signals obtained ...
Supporting Information Parfenov et al. 10.1073/pnas.1416074111
... publications/hnsc_2013). Data Availability. All sequence BAM files are available at CGHub (cghub.ucsc.edu/). HPV Determination and Identification of Genomic Integration from WGS Data. The PathSeq (4) algorithm was used to perform ...
... publications/hnsc_2013). Data Availability. All sequence BAM files are available at CGHub (cghub.ucsc.edu/). HPV Determination and Identification of Genomic Integration from WGS Data. The PathSeq (4) algorithm was used to perform ...
Tracking the algal origin of the Ulva bloom in the Yellow Sea by a
... Ulva because often unattached thalli demonstrate considerable morphological plasticity (Malta et al., 1999). Use of appropriate molecular markers can both identify the algae and provide important information concerning the origins and dynamics of the blooms (Malta et al., 1999; Largo et al., 2004). ...
... Ulva because often unattached thalli demonstrate considerable morphological plasticity (Malta et al., 1999). Use of appropriate molecular markers can both identify the algae and provide important information concerning the origins and dynamics of the blooms (Malta et al., 1999; Largo et al., 2004). ...
Selection Vector for Direct Cloning of Proof Reading Polymerase
... was present. The overall success rate for the pUC18ccdB vector to provide a correctly incorporated medium sized PCR product was 94% (95% confidence interval (CI95%) 73% to 98%) with a 100% (CI95% 63% to 100%) success rate for 1.3 kb PCR products and a 86% success rate (CI95% 52% to 99%) for 2.2 kbp ...
... was present. The overall success rate for the pUC18ccdB vector to provide a correctly incorporated medium sized PCR product was 94% (95% confidence interval (CI95%) 73% to 98%) with a 100% (CI95% 63% to 100%) success rate for 1.3 kb PCR products and a 86% success rate (CI95% 52% to 99%) for 2.2 kbp ...
Full Text PDF - Jaypee Journals
... abnormal proportions and demonstrates parasitism, all of the following conditions which are required for disease have been satisfied: the local environment is one in which the species can express its virulence properties, the pathogen is in numbers that exceed the threshold for that host; other bact ...
... abnormal proportions and demonstrates parasitism, all of the following conditions which are required for disease have been satisfied: the local environment is one in which the species can express its virulence properties, the pathogen is in numbers that exceed the threshold for that host; other bact ...
Molecular studies of major depressive disorder
... Molecular studies of major depressive disorder: the epigenetic perspective J Mill and A Petronis The Krembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, ON, Canada Major depressive disorder (MDD) is a common and highly heterogeneous psychiatric disorder encompassi ...
... Molecular studies of major depressive disorder: the epigenetic perspective J Mill and A Petronis The Krembil Family Epigenetics Laboratory, Centre for Addiction and Mental Health, Toronto, ON, Canada Major depressive disorder (MDD) is a common and highly heterogeneous psychiatric disorder encompassi ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.