Adaptation of Drosophila to a novel laboratory environment reveals
... marker displaying a pattern of non-neutral evolution was detected in each study. The consistent identification of selection with a moderate number of markers strongly suggests that a large fraction of the genome responds to selection. With the advent of second-generation sequencing technology, it ha ...
... marker displaying a pattern of non-neutral evolution was detected in each study. The consistent identification of selection with a moderate number of markers strongly suggests that a large fraction of the genome responds to selection. With the advent of second-generation sequencing technology, it ha ...
29th International Conference on Animal Genetics ISAG2004/TOKYO
... Construction of a high resolution comparative gene map between human chromosome 14 and swine chromosomes using RH mapping. Hiroshi Yasue (National Institute of Agrobiological Sciences) ...
... Construction of a high resolution comparative gene map between human chromosome 14 and swine chromosomes using RH mapping. Hiroshi Yasue (National Institute of Agrobiological Sciences) ...
Tandem duplications and the limits of natural
... Tandem duplications are an essential source of genetic novelty, and their variation in natural populations is expected to influence adaptive walks. Here, we describe evolutionary impacts of recently-derived, segregating tandem duplications in Drosophila yakuba and Drosophila simulans. We observe an ...
... Tandem duplications are an essential source of genetic novelty, and their variation in natural populations is expected to influence adaptive walks. Here, we describe evolutionary impacts of recently-derived, segregating tandem duplications in Drosophila yakuba and Drosophila simulans. We observe an ...
Use of a novel cassette to label phenotypically a cryptic plasmid of
... isolated on a Sau3A fragment which on insertion at a BamHI site regenerates a BamHI site at the downstream end-of-thetermin~i-^(GiTpAPG3,Fig. 1). However, downstream of the rrnBt, tz terminators from pKK223-3 there is no convenient restriction site before the bla promoter at position 4189 of the pBR ...
... isolated on a Sau3A fragment which on insertion at a BamHI site regenerates a BamHI site at the downstream end-of-thetermin~i-^(GiTpAPG3,Fig. 1). However, downstream of the rrnBt, tz terminators from pKK223-3 there is no convenient restriction site before the bla promoter at position 4189 of the pBR ...
Characterization of the RND family of multidrug efflux pumps: in
... metals (Table S1) to be considered as seed sequences for the profile. Provalidator clustered these sequences using BLASTCLUST without rejecting any of them since they were found to be non-redundant (less than 60% identical). The generation of a profile requires a multi-alignment of the seed sequence ...
... metals (Table S1) to be considered as seed sequences for the profile. Provalidator clustered these sequences using BLASTCLUST without rejecting any of them since they were found to be non-redundant (less than 60% identical). The generation of a profile requires a multi-alignment of the seed sequence ...
Alkaline Lonar lake, India – A treasure of
... revealed that some geological and chemical reports are available on Lonar Lake. However, there is meager data on the bacterial diversity of Lonar Lake using cultivation-based approach and phylogenetic analyses. Recently microbial diversity of Lonar Lake was analyzed using culture independent approac ...
... revealed that some geological and chemical reports are available on Lonar Lake. However, there is meager data on the bacterial diversity of Lonar Lake using cultivation-based approach and phylogenetic analyses. Recently microbial diversity of Lonar Lake was analyzed using culture independent approac ...
AN INSIGHT INTO BIOFILM ECOLOGY AND ITS APPLIED ASPECTS Review Article
... base for the microbial growth on the substrate. This conditioning process is regulated by factors like the nature of the fabricating materials, surface tension, electrophoretic mobility, roughness and wettability of the surfaces [11]. In 1971, it was suggested that bacterial sorption to surfaces inv ...
... base for the microbial growth on the substrate. This conditioning process is regulated by factors like the nature of the fabricating materials, surface tension, electrophoretic mobility, roughness and wettability of the surfaces [11]. In 1971, it was suggested that bacterial sorption to surfaces inv ...
Seed plant phylogeny: Demise of the anthophyte
... communication). Studies of chloroplast internal transcribed spacer (ITS) sequences [5] and 18S rDNA [6] placed angiosperms at the base of seed plants and linked Gnetales with conifers. These trees more seriously contradict the anthophyte hypothesis, as there is no way they can be rerooted so that an ...
... communication). Studies of chloroplast internal transcribed spacer (ITS) sequences [5] and 18S rDNA [6] placed angiosperms at the base of seed plants and linked Gnetales with conifers. These trees more seriously contradict the anthophyte hypothesis, as there is no way they can be rerooted so that an ...
PowerPoint Presentation - No Slide Title
... SNP Discovery and Genotyping Strategies Debbie Nickerson - [email protected] • Overview of Variation in the Human Genome • SNP Discovery Strategies and Status • SNP Data in the PGAs ...
... SNP Discovery and Genotyping Strategies Debbie Nickerson - [email protected] • Overview of Variation in the Human Genome • SNP Discovery Strategies and Status • SNP Data in the PGAs ...
IOSR Journal of Pharmacy and Biological Sciences (IOSR-JPBS)
... closely related to thetypestrains LactobacilluspentosusD79211and LactobacillusarizonensisAJ965482via 16S rRNA gene sequencing and analysis. The isolated strain was found to be a gram positive, rods and react negatively with catalase test. A Central Composite Design [CCD] algorithm was applied to det ...
... closely related to thetypestrains LactobacilluspentosusD79211and LactobacillusarizonensisAJ965482via 16S rRNA gene sequencing and analysis. The isolated strain was found to be a gram positive, rods and react negatively with catalase test. A Central Composite Design [CCD] algorithm was applied to det ...
Annotation Strategy Guide - GEP Community Server
... the correct orientation (i.e. on the forward strand) that contains a large open reading frame with a start codon. Even after modifying the BLAST parameters (i.e. turn off compositional adjustments, decrease the word size, and increase the E-value threshold) and restricting the subject range to where ...
... the correct orientation (i.e. on the forward strand) that contains a large open reading frame with a start codon. Even after modifying the BLAST parameters (i.e. turn off compositional adjustments, decrease the word size, and increase the E-value threshold) and restricting the subject range to where ...
Chapter 4 - DORAS
... To further investigate the reduced haem uptake phenotype of the hmuTUV mutants, semi-quantitative bioassays were set up and the resultant halo diameters were measured. These iron nutrition bioassays were set up as described previously (section 3.2) and halo diameter measurements were taken in a stat ...
... To further investigate the reduced haem uptake phenotype of the hmuTUV mutants, semi-quantitative bioassays were set up and the resultant halo diameters were measured. These iron nutrition bioassays were set up as described previously (section 3.2) and halo diameter measurements were taken in a stat ...
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... • This chain of inferences is continued until either all haplotypes have been recovered, or until no more new haplotypes can be found in ...
... • This chain of inferences is continued until either all haplotypes have been recovered, or until no more new haplotypes can be found in ...
Pharmaceutical Microbiology
... Modern invigorative society, based on the overwhelming and overemphasized broad-spectrum importance vis-a-vis utilities of ‘Microbiology’ profusely gets benefited from the intricate species of scores of microorganisms in several ways and means, namely : antibiotics, vaccines, enzymes, vitamins etc. ...
... Modern invigorative society, based on the overwhelming and overemphasized broad-spectrum importance vis-a-vis utilities of ‘Microbiology’ profusely gets benefited from the intricate species of scores of microorganisms in several ways and means, namely : antibiotics, vaccines, enzymes, vitamins etc. ...
Figures and figure supplements
... Figure 2—figure supplement 4. ChIP-seq profiles of H3K4me3 and total histone H3 across high-variance and low-variance genes. (A) Developmental expression profile, from early cleavage to adult, of the highly expressed high-variance genes (n = 1066). Expression levels were measured by CEL-seq and resc ...
... Figure 2—figure supplement 4. ChIP-seq profiles of H3K4me3 and total histone H3 across high-variance and low-variance genes. (A) Developmental expression profile, from early cleavage to adult, of the highly expressed high-variance genes (n = 1066). Expression levels were measured by CEL-seq and resc ...
Full Text
... releases antipneumococcal free fatty acids from representative human skin surface triacylglycerols; we also identified a primary C. accolens triacylglycerol lipase [26]. This might represent a mechanism by which C. accolens antagonizes S. pneumoniae growth in vivo, thus contributing to colonization ...
... releases antipneumococcal free fatty acids from representative human skin surface triacylglycerols; we also identified a primary C. accolens triacylglycerol lipase [26]. This might represent a mechanism by which C. accolens antagonizes S. pneumoniae growth in vivo, thus contributing to colonization ...
Biological Degradation of Naphthalene: A New Era
... bacteria include Pseudomonas spp, Vibrio spp, Mycobacterium spp,Marinobacter spp, and Sphingomonas spp. Micrococcus spp [2]. Although many naphthalene-degrading bacteria have been isolated, these bacteria may thrive in one environment but may not be able to compete with other micro-organisms in anot ...
... bacteria include Pseudomonas spp, Vibrio spp, Mycobacterium spp,Marinobacter spp, and Sphingomonas spp. Micrococcus spp [2]. Although many naphthalene-degrading bacteria have been isolated, these bacteria may thrive in one environment but may not be able to compete with other micro-organisms in anot ...
Proceedings as -file
... • An integrated RH map of the porcine genome with more than 5000 anchoring points on the human genome provides a framework for the sequencing of the pig [B520] Denis Milan, INRA/Laboratoire de Génétique Cellulaire, France • Construction of pig gene catalog: determination and application of porcine f ...
... • An integrated RH map of the porcine genome with more than 5000 anchoring points on the human genome provides a framework for the sequencing of the pig [B520] Denis Milan, INRA/Laboratoire de Génétique Cellulaire, France • Construction of pig gene catalog: determination and application of porcine f ...
Introduction - Personal homepage directory
... the most inhibited by Colgate® toothpaste with a p-value less than 0.05, which would have had a lower optical density than the samples treated with Crest® and Aquafresh® toothpastes. I predicted triclosan and sodium fluoride together would be more effective in killing oral bacteria than sodium fluor ...
... the most inhibited by Colgate® toothpaste with a p-value less than 0.05, which would have had a lower optical density than the samples treated with Crest® and Aquafresh® toothpastes. I predicted triclosan and sodium fluoride together would be more effective in killing oral bacteria than sodium fluor ...
Discovery and characterization of chromatin states for Please share
... The first group of states, states 1–11, all had high enrichment for promoter regions: 40%– 89% of each state was within 2kb of a RefSeq transcription start site (TSS), compared with 2.7% genome-wide (P<10−200, for all states). These states accounted for 59% of all RefSeq TSS while covering only 1.3% ...
... The first group of states, states 1–11, all had high enrichment for promoter regions: 40%– 89% of each state was within 2kb of a RefSeq transcription start site (TSS), compared with 2.7% genome-wide (P<10−200, for all states). These states accounted for 59% of all RefSeq TSS while covering only 1.3% ...
A component of calcium-activated potassium channels encoded by
... assembled to yield a composite sequence. (A) The three CDNAs drawn to scale. Dashed underlines, CDNA segments that were assembled into the composite shown below; open boxes, open reading frames; hatched boxes, introns that were not spliced out of some CDNAs (17). The open reading frame of 254 is pre ...
... assembled to yield a composite sequence. (A) The three CDNAs drawn to scale. Dashed underlines, CDNA segments that were assembled into the composite shown below; open boxes, open reading frames; hatched boxes, introns that were not spliced out of some CDNAs (17). The open reading frame of 254 is pre ...
factor occupancy and gene expression Effects of sequence variation
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
factor occupancy and gene expression Effects of
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
Specific PCR Primers for the Identification of Salmonella enterica
... Total of 285 chicken-related samples either obtained directly from markets or collected as swabs from chicken farms were detected for S. enterica serovar Enteritidis using both the conventional culture method (BAM) and the PCR procedure developed in this study. Table 3 shows that a single 535-bp PCR ...
... Total of 285 chicken-related samples either obtained directly from markets or collected as swabs from chicken farms were detected for S. enterica serovar Enteritidis using both the conventional culture method (BAM) and the PCR procedure developed in this study. Table 3 shows that a single 535-bp PCR ...
factor occupancy and gene expression Effects of sequence variation
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
... with homozygous exons but heterozygous introns (Knight et al. 2003), revealing many additional otherwise undetectable instances of differential allelic expression. Together, the results provide many insights into how genome sequence impacts TF occupancy, and the extent to which that occupancy impact ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.