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A new type of Hidden Markov Models to predict complex domain
A new type of Hidden Markov Models to predict complex domain

... Abstract: Profile Hidden Markov Models (pHMMs) represent sequence regions, called domains or motifs, that are conserved among the proteins of a family. They are routinely used either i/ to recognize the presence of a domain in a protein and thereby to test its membership of a known family, or ii/ to ...
PowerPoint Template
PowerPoint Template

...  Determining which of the myriad of interactions comprise true protein complexes  Hypothesis: Highly connected subgraph or clusters within a PPI network could indicate protein complexes  Increasing size of the PPI graph, the number of nodes in individual clusters increases, while the number of id ...
Lecture 8: Protein structure analysis
Lecture 8: Protein structure analysis

... Structural classification of proteins (SCOP)  The SCOP database aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known.  Created by manual inspection and aided by automated ...
Chapter 17 – Procedures for Identifying Pathogens and Diagnosing
Chapter 17 – Procedures for Identifying Pathogens and Diagnosing

... culturing to narrow down the most likely cause of the infection. Macroscopic Morphology – traits that you can see with your eyes, such as culture characteristics on agar plates. Physiological/Biochemical Characteristics – test for the presence of enzymes, use to assess metabolic and biochemical prop ...
GDI
GDI

... isoprenyl anchor and thereby keeps the Rab in a soluble cytosolic form. 2.Membrane attachment of Rabs requires the function of a GDF that dissociates the GDI–Rab complex and allows the prenyl anchor to be inserted into the membrane. 3.Specific GEFs exchange the bound GDP for GTP, thereby activating ...
Slide 1
Slide 1

... • Fat also cushions vital organs. • Layer of fat can also function as ...
Protein Structure and Function
Protein Structure and Function

... If the transition state can be bound more tightly than the substrate, activation energy will be reduced The differential binding of enzyme for these two state Is the driving force of reactions ...
Anti-Adenosine A3 Receptor antibody - Cytoplasmic domain ab140700
Anti-Adenosine A3 Receptor antibody - Cytoplasmic domain ab140700

... Our Abpromise guarantee covers the use of ab140700 in the following tested applications. The application notes include recommended starting dilutions; optimal dilutions/concentrations should be determined by the end user. ...
Clean, Burn and Shape
Clean, Burn and Shape

... many companies move quickly to cash in on the new trend … some move much too quickly, and some, in their desire to have the most competitive price on the web, seriously compromise quality. To achieve the great effects on fat and carbohydrate metabolism that GCA can give us, strict quality control an ...
Physiology of metabolic processes in the body. Composition of diet
Physiology of metabolic processes in the body. Composition of diet

complex I
complex I

lecture 21
lecture 21

... PAN: another archaeal AAA ATPase  PAN is an archaeal homohexameric complex that is evolutionarily related to the six different subunits of the eukaryotic proteasome AAA ATPase rpt2 proteins that form part of the regulatory particle and bind the core proteasome  PAN is an acronymn for Proteasome A ...
DETECTION OF INFECTIOUS PANCREATIC NECROSIS VIRUS BY
DETECTION OF INFECTIOUS PANCREATIC NECROSIS VIRUS BY

... strains, and (iii) Powder Mill and d'Honnincthun strains. When the viral polypeptides of five strains of IPNV were analyzed by SDS-polyacrylamide gel electrophorsis, the strains were also divided into three groups by the molecular weight of protein designated as f3 (VP z). This result was consistent ...
Protein Synthesis
Protein Synthesis

... G pairs with C C pairs with G • RNA to protein: every 3 bases code for an amino acid. ...
Organic Compounds
Organic Compounds

... Enzymes are a type of protein that speed up chemical reactions. They are known as "biological catalysts." For example, your stomach would not be able to break down food if it did not have special enzymes to speed up the rate of digestion. Antibodies that protect you against disease are proteins. Mus ...
Chapt. 10: Protein Sorting, Transport: Endoplasmic Reticulum, Golgi
Chapt. 10: Protein Sorting, Transport: Endoplasmic Reticulum, Golgi

Proteins: Primary Structure
Proteins: Primary Structure

... bond is strong, it must be broken apart by an enzyme  Enzymes that breakdown proteins are called proteases  Examples of protease activity other than digestion: ...
ppt
ppt

... • Proteins from ER are processed and sorted for transport: to endosomes, lysosomes, plasma membrane, or secretion. • Most glycolipids and sphingomyelin are made in Golgi, • The Golgi is composed of flattened membrane-enclosed sacs (cisternae) and associated vesicles: ...
Plant disease - Topic exploration pack
Plant disease - Topic exploration pack

... Make a 3D model leaf section. Draw in detail at least one palisade cell. ...
Proteins - Winona State University
Proteins - Winona State University

POWERPOINT VERSION () - Arkansas State University
POWERPOINT VERSION () - Arkansas State University

... Proteins – enzymes, antibodies, structural protein (e.g. collagen) ...
Pa I I, hl.  L.   Blasticidin-S: on... Cycloheximide  has been used widely  as  ...
Pa I I, hl. L. Blasticidin-S: on... Cycloheximide has been used widely as ...

... L. Blasticidin-S: o n i n h i b i t o r ...
Molecules of Life
Molecules of Life

... vegetable oil. All lipids are hydrophobic. This means that they do not mix with water. If you make salad dressing using oil and water, you can shake it to mix it but the oil and water will quickly separate again. This is because the oil (a lipid) is hydrophobic and does not mix with water. Proteins ...
Name: JJJJJJJJJJJJJJJJJJJJ Student ID: JJJJJJJJJJJJJJJJJJJJJJJ
Name: JJJJJJJJJJJJJJJJJJJJ Student ID: JJJJJJJJJJJJJJJJJJJJJJJ

... __) (a) (4pts) Without drawing any graph, estimate the Km and Vmax (with units) from this table of kinetic data (with units). ...
Structures of
Structures of

... Amino acid side chains in globular proteins are distributed according to their polarity: 1.  Nonpolar residues Val, Leu, Ile, Met and Phe occur mostly in the interior of a protein, excluded from the contact with water, hydrophobic core, compact packing (no empty room) 2.  Charged amino acids Arg, Hi ...
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Western blot



The western blot (sometimes called the protein immunoblot) is a widely used analytical technique used to detect specific proteins in a sample of tissue homogenate or extract. It uses gel electrophoresis to separate native proteins by 3-D structure or denatured proteins by the length of the polypeptide. The proteins are then transferred to a membrane (typically nitrocellulose or PVDF), where they are stained with antibodies specific to the target protein. The gel electrophoresis step is included in western blot analysis to resolve the issue of the cross-reactivity of antibodies.There are many reagent companies that specialize in providing antibodies (both monoclonal and polyclonal antibodies) against tens of thousands of different proteins. Commercial antibodies can be expensive, although the unbound antibody can be reused between experiments. This method is used in the fields of molecular biology, immunogenetics and other molecular biology disciplines. A number of search engines, such as CiteAb, Antibodypedia, and SeekProducts, are available that can help researchers find suitable antibodies for use in western blotting.Other related techniques include dot blot analysis, immunohistochemistry and immunocytochemistry where antibodies are used to detect proteins in tissues and cells by immunostaining, and enzyme-linked immunosorbent assay (ELISA).The method originated in the laboratory of Harry Towbin at the Friedrich Miescher Institute. The name western blot was given to the technique by W. Neal Burnette and is a play on the name Southern blot, a technique for DNA detection developed earlier by Edwin Southern. Detection of RNA is termed northern blot and was developed by George Stark at Stanford.
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