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Introduction to Spectroscopy and Fluorescence
Introduction to Spectroscopy and Fluorescence

... protein hydrophobic cores. The aromatic side chain can also mean that Tryptophan is involved in stacking interactions with other aromatic sidechains. Role in function: As it contains a non-carbon atom (nitrogen) in the aromatic ring system, Tryptophan is more reactive than Phenylalanine though it is ...
Chapter 5 The Structure & Function of Molecules
Chapter 5 The Structure & Function of Molecules

... – Are constructed from two types of smaller molecules, a single glycerol and usually three fatty acids – Vary in the length and number and locations of ...
video slide
video slide

... – Are constructed from two types of smaller molecules, a single glycerol and usually three fatty acids – Vary in the length and number and locations of ...
Nitrogen Balance and Protein Requirements: Definition and
Nitrogen Balance and Protein Requirements: Definition and

... cannot, by definition, be synthesised by the body, they must be introduced with the diet in a proportion that will fit with the organism’s metabolic needs. On the other hand, in the absence of dietary NEAA, despite the theoretical capability of the body to synthesise them, nitrogen will be needed fo ...
Assembly and function of cell surface structures of the
Assembly and function of cell surface structures of the

... Staphylothermus marinus tetrabrachion whereas no SlaA homologs were found outside of the Sulfolobales order. Molecular modelling predictions showed that the SlaB proteins are most probably composed of 2-3 consecutive beta sandwich domains followed by an extended coiled-coil domain of 15-17 nm in len ...
Sadagopan Krishnan
Sadagopan Krishnan

The advantages of being small  Stockholm University
The advantages of being small Stockholm University

... be essential for the viability of the cell and the lipid content is therefore adjusted to maintain this property. The strain caused by the insertion of nonbilayer forming lipids, results in the curvature stress that exist in the membrane. Forcing a non-bilayer prone lipid into a cone shape in a memb ...
363 Isoelectric focusing of indoleacetic acid degrading enzymes
363 Isoelectric focusing of indoleacetic acid degrading enzymes

... showed IAA of these the ...
Hybrid tryptophan aporepressor containing ligand binding sites
Hybrid tryptophan aporepressor containing ligand binding sites

... sponse to the amount of an end product; thus, it func 262:4922-4927 (1987)); surprisingly, these are formed tions as a rheostat, rather than an on/off switch. In 35 by the side chains of residues from both monomers in a ...


... only in their bond lengths. Explain why the scattered X-rays from these two molecules would be different such that their structures could be determined by Xray diffraction. Choice A:  The overall molecular weight would be obtained by gel filtration chromatography.  The subunit molecular weights wo ...
pharmaceutical biochemistry
pharmaceutical biochemistry

... Glycogen metabolism is under coordinated hormonal and allosteric regulation. The key enzymes in this process are the glycogen phosphorylase and the glycogen synthase. Glucagon and epinephrine could stimulate the glycogen degradation and inhibit glycogen synthesis; insulin has an opposite effect: it ...
Cancer Prone Disease Section Oculocutaneous Albinism Atlas of Genetics and Cytogenetics
Cancer Prone Disease Section Oculocutaneous Albinism Atlas of Genetics and Cytogenetics

... blue or in extreme cases as in OCA1, it is translucent to such an extent that it appears pink or red in ambient light. The skin remains white or only become slightly pigmented with time in case of OCA1 whereas the patients suffering from the other 3 types of albinism have residual pigmentation and l ...
A Method to Identify Protein Sequences that Fold into a Known
A Method to Identify Protein Sequences that Fold into a Known

... 3D structure profiles. In order to search a sequence database for are subdivided into two types, labeled P, and P, in order of the proteins most compatible with an environment string, we used increasing polarity. Since we treat water as polar, exposed positions the Profile method (25, 26), which was ...
The dinitrogenase reductase
The dinitrogenase reductase

... Trp, His, glucosamine-6-P, CTP, and AMP. • The amino groups of most other amino acids are derived from glutamate via transamination. ...
JOURNAL OF APPLIED SCIENCE AND AGRICULTURE
JOURNAL OF APPLIED SCIENCE AND AGRICULTURE

... Rice bran is one of the co-products from rice milling process that has high protein content among many other beneficial minerals and nutrients. Recently there are a few novel water-based extraction methods introduced such as subcritical and hydrothermal extraction. However simpler methods of water e ...
OMB No. 0925-0001/0002 (Rev. 08/12), Biographical Sketch Format
OMB No. 0925-0001/0002 (Rev. 08/12), Biographical Sketch Format

... industrial production of pharmaceutical proteins. The major advance was gaining control over cell-free metabolism. Initially cofactors were added to activate the conversion of pyruvate to acetyl CoA as an ATP source. This was expanded to include oxidative phosphorylation using reducing equivalents f ...
Meat and Bone Meal An introductory guide
Meat and Bone Meal An introductory guide

... The amount of nitrogen in the muscle tissue of animals is relatively constant at around 16 percent of the crude protein level. The crude protein level of meat and bone meal can therefore be measured by determining the nitrogen content and multiplying it by the factor 6.25 (100 ÷ 16 = 6.25) There are ...
F.Y. B.Sc. - Vocational Biotechnology
F.Y. B.Sc. - Vocational Biotechnology

... Partition principle, Thin layer chromatography , Paper chromatography , Ion exchange chromatography , Affinity chromatography ,Gel filtration chromatography Spectrophotometry 1) uv and visible spectrophotometry - With Basics 2) Nephelometry 3) Turbidometry Microscopy 1) Introduction to microscopy 2) ...
molecular biology
molecular biology

... A 3D structural element or fold, which appears also in a variety of other molecules In the context of proteins, the term is sometimes used interchangeably with “structure domain,” although a domain need not be a motif nor, if it contains a motif, need not be made up of only one ...
Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein
Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein

... protein (M2) from collinear and spliced mRNA, respectively. No homologue to the influenza virus ion channel protein has been identified in ISAV. Infection with ISAV leads to activation and production of type I interferon (IFN) in Atlantic salmon and in cell lines derived from Atlantic salmon [7–9]. ...
Dictyostelium lysosomal proteins with different sugar modifications
Dictyostelium lysosomal proteins with different sugar modifications

... and Dimond, 1988). ELISA for Man-6-P-OCH3 in Percoll gradient fractions could not be done due to technical difficulties. mLE2 recognizes similar bands in all gradient fractions (Fig. 1A, lane 3), and α-mannosidase (Fig. 1A, lane 4) is clearly one of the major proteins in the lysosomal and PNS fracti ...
Cloning, sequence and in vitro transcription/translation analysis of a
Cloning, sequence and in vitro transcription/translation analysis of a

... beginning of ORF I (.5’-GTATGAGT) and the 1-nt overlap between the end of ORF 1 and the beginning of ORF E (5’-CTTAATGGC) suggest possible translational coupling of these ORFs during translation from a single polycistronic transcript (Normark et al.. 1983) derived from an AIE operon. The presence of ...
X-ray structures of the N and C-terminal domains of a
X-ray structures of the N and C-terminal domains of a

... loop which is presumably mobile. It is possible that the RNA binding regions of these two domains face each other engulfing the RNA between them, thus conferring resistance to RNAses. In the various crystal forms of the CTD, we have seen the ability of CTD to self-associate in multiple modes with bu ...
Cholesterol and Lipid T Port
Cholesterol and Lipid T Port

... Greasy Spoon Digestion and Transport   Chylomicrons (98-99% lipid 1-2% protein) - transport of dietary lipids into circulation - mostly TAGs some phospholipid and cholerol esters - Initially synthesized in intestine, 1/2 in rats min, in humans 30 mins - transport FA from lymphatic system to blood s ...
Week 3. Gel electrophoresis and Bioinformatics
Week 3. Gel electrophoresis and Bioinformatics

... laboratory by following the instructions provided. When you are finished with the laboratory, upload your completed handout to the course management system. Task 1: Prepare the samples The PCR reactions from last week have a total volume of 25 L. Pipette 10 L of this reaction into a clean 500 L t ...
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Western blot



The western blot (sometimes called the protein immunoblot) is a widely used analytical technique used to detect specific proteins in a sample of tissue homogenate or extract. It uses gel electrophoresis to separate native proteins by 3-D structure or denatured proteins by the length of the polypeptide. The proteins are then transferred to a membrane (typically nitrocellulose or PVDF), where they are stained with antibodies specific to the target protein. The gel electrophoresis step is included in western blot analysis to resolve the issue of the cross-reactivity of antibodies.There are many reagent companies that specialize in providing antibodies (both monoclonal and polyclonal antibodies) against tens of thousands of different proteins. Commercial antibodies can be expensive, although the unbound antibody can be reused between experiments. This method is used in the fields of molecular biology, immunogenetics and other molecular biology disciplines. A number of search engines, such as CiteAb, Antibodypedia, and SeekProducts, are available that can help researchers find suitable antibodies for use in western blotting.Other related techniques include dot blot analysis, immunohistochemistry and immunocytochemistry where antibodies are used to detect proteins in tissues and cells by immunostaining, and enzyme-linked immunosorbent assay (ELISA).The method originated in the laboratory of Harry Towbin at the Friedrich Miescher Institute. The name western blot was given to the technique by W. Neal Burnette and is a play on the name Southern blot, a technique for DNA detection developed earlier by Edwin Southern. Detection of RNA is termed northern blot and was developed by George Stark at Stanford.
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