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2009/05/21 Lecture
2009/05/21 Lecture

... Rhodamine composition experiments detect tight self-association of HA2 TMD and non-random interaction of TMD:FP association. The intra-trimeric interaction is detected for x values near 1 since nearly all peptide molecules are labeled and, therefore, quenching arises predominantly from the close nei ...
N - IBIVU
N - IBIVU

PP - Columbia University
PP - Columbia University

... All the polypeptides are denatured and behave as random coils All the polypeptides have the same charge per unit length All are subject to the same electromotive force in the electric field Separation based on the sieving effect of the polyacrylamide gel Separation is by molecular weight only SDS do ...
ppt - Striepen Lab
ppt - Striepen Lab

... Antigenic variation  6-10% of the total genome of African trypanosomes is coding for VSGs (more than 1000 genes)  Only one is expressed at a given time the other 999 genes are shut down and completely silent (allelic exclusion)  At a low frequency a switch to a different gene occurs, if the host ...
Document
Document

... Puromycin has been widely used as a basic tool for studying protein synthesis. Now, puromycin hydrochloride is particularly useful for the selection of cell types harbouring ...
Regulation of Phosphate Transport in Proximal Tubule
Regulation of Phosphate Transport in Proximal Tubule

... demineralization, or both (usual causes such as hyperparathyroidism were excluded) • Three different NHERF1 mutations in 7 patients, which had a significantly lower renal phosphate reabsorption capacities than patients with wild type NHERF1 – Greater cAMP stimulation and greater inhibition of phosph ...
Importance of main-chain hydrophobic free energy to the stability of
Importance of main-chain hydrophobic free energy to the stability of

... select one pair from each family. The three-dimensional structures of all these proteins have been taken from Protein Data Bank [28]. For a given protein, the PDB files contain coordinates for the structure observed in a crystallographic asymmetric unit. This may not reflect the true biochemically r ...
CBNS 106 Review
CBNS 106 Review

... – Excitatory vs. inhibitory synapses: Bind different neurotransmitters, allow different ions to pass through channels – Membrane potential less negative than -65mV = hyperpolarizing IPSP ...
Properties of a newly characterized protein of the bovine - K-REx
Properties of a newly characterized protein of the bovine - K-REx

... are more rapidly incorporated while others are incoporated more slowly i.e. ...
lH NMR characterization of two crambin species
lH NMR characterization of two crambin species

... Pro-22/Leu-25 (fraction II). As is shown below this is confirmed by the NMR measurements. 3.2. NMR spectra Previously, it has been observed [6-91 that the amino acid heterogeneity causes a splitting of many resonances in the ‘H-NMR spectrum of crambin. As shown in fig.2A in the aromatic region two s ...
Poster
Poster

... Point of vesicle binding that forms α-helix when in proximity to membrane ...
The Chemical Building Blocks of Life
The Chemical Building Blocks of Life

... Carbon and hydrogen atoms both have very similar electronegativities, so electrons in C—C and C—H bonds are evenly distributed, and there are no significant differences in charge over the molecular surface. For this reason, hydrocarbons are nonpolar. Most organic molecules that are produced by cells ...
Student Questions and Answers October 15, 2002
Student Questions and Answers October 15, 2002

... Answer: FK: Enzymes (and other macromolecular components) usually are not evenly distributed. This is due to a) compartmentation, b) at least loose interaction with other cellular components (including membranes and cytoskeleton), and c) limited diffusion under in vivo conditions. [As already illust ...
Lec 15: Nitrogen in biochemistry
Lec 15: Nitrogen in biochemistry

... • Naturally, N2 is fixed using an enzyme called Nitrogenase, which catalyzes the following reaction: ...
Module 1 (Review)
Module 1 (Review)

... Describe how the structure of the plasma membrane allows it to function as a regulatory structure and/or protective barrier for a cell. Compare the mechanisms that transport materials across the plasma membrane. Describe how membrane-bound cellular organelles facilitate the transport of materials wi ...
Processing Synthesis of Cellulase from Ripening
Processing Synthesis of Cellulase from Ripening

updated ppt slides - UCLA Chemistry and Biochemistry
updated ppt slides - UCLA Chemistry and Biochemistry

... There are also several ion pairs in the T-state that are broken upon transition to the R-state. ...
do not - wwphs
do not - wwphs

... How do enzymes work? 1) Enzymes act upon a substance called a substrate 2) The enzyme has an indent in it called the active site where the substrate can fit into, kind of like a lock and a key ...
Chapter 16 Amino Acids, Proteins, and Enzymes
Chapter 16 Amino Acids, Proteins, and Enzymes

Mitochondria, Chloroplasts, and Peroxisomes
Mitochondria, Chloroplasts, and Peroxisomes

... proteins involved in translocation (see Figure 10.4). On the cytosolic side, members of the Hsp70 family of chaperones maintain proteins in a partially unfolded state so that they can be inserted into the mitochondrial membrane. As they cross the inner membrane, the unfolded polypeptide chains bind ...
SBI 4UI Review of Biochemistry Name: Learning Goals R Y G
SBI 4UI Review of Biochemistry Name: Learning Goals R Y G

C-terminal Truncation of p21H Preserves Crucial Kinetic and
C-terminal Truncation of p21H Preserves Crucial Kinetic and

... tein concentrations were determined with the Bradford assay (26) using bovine serum albuminasa standard, whereas [8-3H]GDP binding activity was determined by the filter binding assay (23, 24). Standard buffer was always, unless stated otherwise, 64 mM Tris. HCl, pH 7.6, 1 mM dithioerythritol, 10 mM ...
ijbbjune2k2
ijbbjune2k2

... Best fit curves of SANS were produced by applying Hayter-Penfold analysis considering monodisperse ellipsoid model for the micelles. The best fits were found for constant semi-minor axis=8Å with an increasing semi-major axis for increasing n-alkanol chain lengths. The micellar growths in presence of ...
AP Biology Summer Assignment Chapter 3 Quiz 2016-17
AP Biology Summer Assignment Chapter 3 Quiz 2016-17

... the biologist extracted polynucleotides from the cells and separated them into three groups, each containing a range of different polynucleotide lengths. The first group contained the shortest polynucleotides. The second group contained polynucleotides of midrange length, and the third group contain ...
Answer: ( c ) Relative specificity One of the main characteristics
Answer: ( c ) Relative specificity One of the main characteristics

... One of the main characteristics of enzymes is their high specificity. Enzymes are specific for: a) the substrate b) the reaction It means that they catalyze the transformation of just one substrate or a family of substrates that are structurally related, catalyzing only one of the possible reactions ...
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Western blot



The western blot (sometimes called the protein immunoblot) is a widely used analytical technique used to detect specific proteins in a sample of tissue homogenate or extract. It uses gel electrophoresis to separate native proteins by 3-D structure or denatured proteins by the length of the polypeptide. The proteins are then transferred to a membrane (typically nitrocellulose or PVDF), where they are stained with antibodies specific to the target protein. The gel electrophoresis step is included in western blot analysis to resolve the issue of the cross-reactivity of antibodies.There are many reagent companies that specialize in providing antibodies (both monoclonal and polyclonal antibodies) against tens of thousands of different proteins. Commercial antibodies can be expensive, although the unbound antibody can be reused between experiments. This method is used in the fields of molecular biology, immunogenetics and other molecular biology disciplines. A number of search engines, such as CiteAb, Antibodypedia, and SeekProducts, are available that can help researchers find suitable antibodies for use in western blotting.Other related techniques include dot blot analysis, immunohistochemistry and immunocytochemistry where antibodies are used to detect proteins in tissues and cells by immunostaining, and enzyme-linked immunosorbent assay (ELISA).The method originated in the laboratory of Harry Towbin at the Friedrich Miescher Institute. The name western blot was given to the technique by W. Neal Burnette and is a play on the name Southern blot, a technique for DNA detection developed earlier by Edwin Southern. Detection of RNA is termed northern blot and was developed by George Stark at Stanford.
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