Benchmarking homology detection procedures with low complexity
... techniques such as the Pfam hidden Markov models, common domain assignment is highly sensitive and applicable at far larger evolutionary separation than direct sequence comparison methods such as protein BLAST (Madera and Gough, 2002; Wistrand and Sonnhammer, 2005). If two proteins both have well-de ...
... techniques such as the Pfam hidden Markov models, common domain assignment is highly sensitive and applicable at far larger evolutionary separation than direct sequence comparison methods such as protein BLAST (Madera and Gough, 2002; Wistrand and Sonnhammer, 2005). If two proteins both have well-de ...
Oxypred: Prediction and Classification of Oxygen-Binding
... Oxygen-binding proteins are widely present in eukaryotes ranging from non-vertebrates to humans (1 ). Moreover, these proteins have also been reported to be present in many prokaryotes and protozoans (2 ). The occurrence of oxygen-binding proteins in all kingdoms of organisms, though not in all orga ...
... Oxygen-binding proteins are widely present in eukaryotes ranging from non-vertebrates to humans (1 ). Moreover, these proteins have also been reported to be present in many prokaryotes and protozoans (2 ). The occurrence of oxygen-binding proteins in all kingdoms of organisms, though not in all orga ...
Amino Acids in Dairy Nutrition – Where Do They Fit?
... net amino acid requirement (Table 2). Each of these steps has variance associated with it, and this system is particularly sensitive to the efficiency factors for the different physiological functions. Table 2. Utilization of individual absorbed amino acids for physiological functions (g/g). From O’ ...
... net amino acid requirement (Table 2). Each of these steps has variance associated with it, and this system is particularly sensitive to the efficiency factors for the different physiological functions. Table 2. Utilization of individual absorbed amino acids for physiological functions (g/g). From O’ ...
Introduction to Protein Summit 2.0: continued exploration of the
... meeting the current daily protein recommendation for adults to a more diverse dialogue on optimal protein needs for human health. Proceedings from the first summit were published as a supplement in the American Journal of Clinical Nutrition (1), and articles from the supplement have been downloaded ...
... meeting the current daily protein recommendation for adults to a more diverse dialogue on optimal protein needs for human health. Proceedings from the first summit were published as a supplement in the American Journal of Clinical Nutrition (1), and articles from the supplement have been downloaded ...
Plant mitochondria contain the protein translocase subunits TatB
... that the At5g43680 and related proteins grouped most closely with the TatB proteins from bacteria indicating that At5g43680 is a possible TatB like protein (Figure 2). Although some of the bootstrap values are low we believe the tree is accurate. We also tested Bayesian homology using MrBayes (Ronq ...
... that the At5g43680 and related proteins grouped most closely with the TatB proteins from bacteria indicating that At5g43680 is a possible TatB like protein (Figure 2). Although some of the bootstrap values are low we believe the tree is accurate. We also tested Bayesian homology using MrBayes (Ronq ...
Yeast Display Evolution of a Kinetically Efficient 13-Amino
... difficult to recapitulate in a peptide. Second, the function may require contributions from multiple, noncontiguous regions of a protein. Third, structural information is not available for many proteins, and in some cases, even the regions that contribute to a protein’s relevant activity are not kno ...
... difficult to recapitulate in a peptide. Second, the function may require contributions from multiple, noncontiguous regions of a protein. Third, structural information is not available for many proteins, and in some cases, even the regions that contribute to a protein’s relevant activity are not kno ...
Spnr, a Murine RNA-binding Protein That Is Localized to
... are shown in Fig. 1 a. The Spnr cDNA codes for a 649-amino acid protein of 71 kD that has significant homology with a family of known RNA-binding proteins that includes Xenopus 4F-1 and 4F-2, Drosophila staufen, human Tar-binding protein and human PKR (Bass et al., 1994; St Johnston et al., 1992; Ga ...
... are shown in Fig. 1 a. The Spnr cDNA codes for a 649-amino acid protein of 71 kD that has significant homology with a family of known RNA-binding proteins that includes Xenopus 4F-1 and 4F-2, Drosophila staufen, human Tar-binding protein and human PKR (Bass et al., 1994; St Johnston et al., 1992; Ga ...
Evidence for Distinct Amino Acid Transport Systems in
... several neutral amino acids. In soybean cells [4] glutamate uptake was not inhibited by aspartic acid. In tobacco cells the uptake of L-aspartic acid was not inhibitable by glutamic acid. This un expected result cannot explained by a very slow absorption of aspartic acid by tobacco cells as was exp ...
... several neutral amino acids. In soybean cells [4] glutamate uptake was not inhibited by aspartic acid. In tobacco cells the uptake of L-aspartic acid was not inhibitable by glutamic acid. This un expected result cannot explained by a very slow absorption of aspartic acid by tobacco cells as was exp ...
... whole structure of the fusion protein construction is made up of, Clostridium epsilon toxin ETX/ MTX2, family member which is combined with Leucocidin/ASH4 hemolysin domain. The nucleotide and derived amino acid sequences of the epsilon toxin gene are located between the start codon at the base 188 ...
Assignment: Amino Acids, Peptides, and Proteins
... increase in height of the next peak on the amino acid analyzer. If there is already a large amount of that amino acid present in the solution, it would be difficult, if not impossible, to detect any change in peak height. Small fragments have only a few amino acids, and this problem does not occur. ...
... increase in height of the next peak on the amino acid analyzer. If there is already a large amount of that amino acid present in the solution, it would be difficult, if not impossible, to detect any change in peak height. Small fragments have only a few amino acids, and this problem does not occur. ...
A protein domain interaction interface database: InterPare | BMC
... the website. As the threshold gets higher the number of interface residue gets smaller. We used SCOP 1.65 as a domain definition. It contains 54,745 domains from 20,619 PDB Entries (August 2003). InterPare, at the time of this writing, contains 26,999 PDB entries (September 2004). At present, there ...
... the website. As the threshold gets higher the number of interface residue gets smaller. We used SCOP 1.65 as a domain definition. It contains 54,745 domains from 20,619 PDB Entries (August 2003). InterPare, at the time of this writing, contains 26,999 PDB entries (September 2004). At present, there ...
Measurement of the synthesis of liver
... of amino acids to the medium increase the rate of albumin production. It is interesting that whole livers or isolated cclls from protein-deprived rats show markedly depressed rates of urea synthesis, and the former fail to incorporate 14C02into urea or arginine. Yet, the ability of such livers to fo ...
... of amino acids to the medium increase the rate of albumin production. It is interesting that whole livers or isolated cclls from protein-deprived rats show markedly depressed rates of urea synthesis, and the former fail to incorporate 14C02into urea or arginine. Yet, the ability of such livers to fo ...
9 Proteins Chapter 9 Proteins
... • These structures result from four types of interactions between the R side chains of the amino acids residues: 1. Disulfide bridges can form between two cysteine residues that are close to each other in the same chain, or between cysteine residues in different chains. These bridges hold the protei ...
... • These structures result from four types of interactions between the R side chains of the amino acids residues: 1. Disulfide bridges can form between two cysteine residues that are close to each other in the same chain, or between cysteine residues in different chains. These bridges hold the protei ...
Amino Acids - Angelo State University
... • More than 200 peptides have been identified as being essential to the body’s proper functioning. • Vasopressin and oxytocin are nonapeptide hormones secreted by the pituitary gland. Six of the amino acid residues are held in a loop by disulfide bridges formed by the oxidation of two cysteine resid ...
... • More than 200 peptides have been identified as being essential to the body’s proper functioning. • Vasopressin and oxytocin are nonapeptide hormones secreted by the pituitary gland. Six of the amino acid residues are held in a loop by disulfide bridges formed by the oxidation of two cysteine resid ...
Magnetic nanoparticles: applications and cellular uptake
... superparamagnetic iron oxide (SPIO) particles have to be at least 10 nm in diameter for increasing the therapeutic effect: ...
... superparamagnetic iron oxide (SPIO) particles have to be at least 10 nm in diameter for increasing the therapeutic effect: ...
Influence of residue 44 on the activity of the M2 proton channel of
... viruses, deactivates in response to external (but not internal) high pH, the Rostock M2 deactivates in response to internal (but not external) high pH. The latter difference in activation characteristics was shown to be determined by three amino acid differences, V27I, F38L and D44N, within the tran ...
... viruses, deactivates in response to external (but not internal) high pH, the Rostock M2 deactivates in response to internal (but not external) high pH. The latter difference in activation characteristics was shown to be determined by three amino acid differences, V27I, F38L and D44N, within the tran ...
A Lipid Droplet Protein of Nannochloropsis with
... in case of the fusion protein or for the presence of LDSP in seed (T2) protein extracts using immunoblotting. Because OLEO1 is a structural, highly abundant protein in mature embryos (Siloto et al., 2006), we expected that high levels of LDSP would be required for successful complementation. Further ...
... in case of the fusion protein or for the presence of LDSP in seed (T2) protein extracts using immunoblotting. Because OLEO1 is a structural, highly abundant protein in mature embryos (Siloto et al., 2006), we expected that high levels of LDSP would be required for successful complementation. Further ...
Protein Interaction Analysis - Bio-Rad
... Even if a protein and its ligand exhibit strong binding affinity for each other and are expressed at sufficient levels in a particular tissue to interact functionally, other factors influence the nature of their interaction. Certain molecules, such as ions or cofactors, may be critical for binding, ...
... Even if a protein and its ligand exhibit strong binding affinity for each other and are expressed at sufficient levels in a particular tissue to interact functionally, other factors influence the nature of their interaction. Certain molecules, such as ions or cofactors, may be critical for binding, ...
Genomic organization of infectious salmon anaemia virus
... open reading frame encoding the P1, PB1, NP, P2, P3 and HA proteins, respectively. Segment 7 encoded the P4/P5 proteins and segment 8 encoded the P6/P7 proteins. Seven virion proteins with molecular masses between 25 and 72 kDa were found by SDS–PAGE analysis. The 72 and 42 kDa proteins were immunor ...
... open reading frame encoding the P1, PB1, NP, P2, P3 and HA proteins, respectively. Segment 7 encoded the P4/P5 proteins and segment 8 encoded the P6/P7 proteins. Seven virion proteins with molecular masses between 25 and 72 kDa were found by SDS–PAGE analysis. The 72 and 42 kDa proteins were immunor ...
Bioinformatics approaches for functional
... available at http://www.ebi.ac.uk/compneur-srv/ LGICdb/. Gallin and Boutet [46] set up a voltage-gated Kþ channel database with a comprehensive set of sequence data, which can be directly used for further analysis. It has more than 2000 entries, and the channels are categorized into subfamilies by p ...
... available at http://www.ebi.ac.uk/compneur-srv/ LGICdb/. Gallin and Boutet [46] set up a voltage-gated Kþ channel database with a comprehensive set of sequence data, which can be directly used for further analysis. It has more than 2000 entries, and the channels are categorized into subfamilies by p ...
Enteroaggregative Escherichia coli Aggregative - CiteSeerX
... The aggregative pattern of adherence (AA) exhibited by enteroaggregative Escherichia coli upon HEp-2 cells is a plasmid-associated property which correlates with aggregative adherence fimbria I (AAF/I) expression and human erythrocyte hemagglutination. By using cloning and mutagenesis strategies, tw ...
... The aggregative pattern of adherence (AA) exhibited by enteroaggregative Escherichia coli upon HEp-2 cells is a plasmid-associated property which correlates with aggregative adherence fimbria I (AAF/I) expression and human erythrocyte hemagglutination. By using cloning and mutagenesis strategies, tw ...
1 (a)
... were divided randomly into six groups, with ten patients in each group. 3. Immunoaffinity depletion: Immunoaffinity depletion is a process that is carried out in order to remove the high abundance proteins present in sera, which hamper the process of detection of medium or low abundance tumour deriv ...
... were divided randomly into six groups, with ten patients in each group. 3. Immunoaffinity depletion: Immunoaffinity depletion is a process that is carried out in order to remove the high abundance proteins present in sera, which hamper the process of detection of medium or low abundance tumour deriv ...