Homology Modeling via Protein Threading - lmm
... is not fully understood. The primary sequence may not fully specify the tertiary structure. chaperones ...
... is not fully understood. The primary sequence may not fully specify the tertiary structure. chaperones ...
Phosphate binding sites identification in protein
... Brakoulias and Jackson (20) built a data set of 3D phosphate-binding motifs, (PbMs) by comparing and then clustering a large set of PbSs. Their work identified 476 binding sites for this ligand grouped into 10 main clusters. Kinoshita et al. (21) compared 491 proteinbinding sites in protein–mononucle ...
... Brakoulias and Jackson (20) built a data set of 3D phosphate-binding motifs, (PbMs) by comparing and then clustering a large set of PbSs. Their work identified 476 binding sites for this ligand grouped into 10 main clusters. Kinoshita et al. (21) compared 491 proteinbinding sites in protein–mononucle ...
evolution of protein function by domain swapping
... come down to more intimate contact and functional coupling between subdomains than between domains. To avoid confusion, this chapter will use the term domain very loosely to refer to both domains and subdomains. The term ‘‘domain swapping’’ refers to genetic rearrangement of proteins by combining pi ...
... come down to more intimate contact and functional coupling between subdomains than between domains. To avoid confusion, this chapter will use the term domain very loosely to refer to both domains and subdomains. The term ‘‘domain swapping’’ refers to genetic rearrangement of proteins by combining pi ...
Recombinant Human NAD Kinase/NADK|C270|NADK_Human
... www.novoprotein.com E-mail: [email protected] ...
... www.novoprotein.com E-mail: [email protected] ...
Full Text - Molecular Biology and Evolution
... (BLASTp) search (Altschul et al. 1990) against the full nonredundant (nr) NCBI protein database confirms these findings (supplementary fig. S1, Supplementary Material online). This dramatic reduction in the conservation of membrane proteins is widespread across the entire tree of life, but the effec ...
... (BLASTp) search (Altschul et al. 1990) against the full nonredundant (nr) NCBI protein database confirms these findings (supplementary fig. S1, Supplementary Material online). This dramatic reduction in the conservation of membrane proteins is widespread across the entire tree of life, but the effec ...
The relative molecular mass, heterogeneity and subunit composition
... slightly basic isoelectric pH (Schwenke et al., 1981) and different reported M , values ranging from 129000 (Gill & Tung, 1976) to 300000 (Schwenke et al.). Work in this laboratory using low-speed sedimentation equilibrium has confirmed the value for the M , obtained by Schwenke et al. (1980) and in ...
... slightly basic isoelectric pH (Schwenke et al., 1981) and different reported M , values ranging from 129000 (Gill & Tung, 1976) to 300000 (Schwenke et al.). Work in this laboratory using low-speed sedimentation equilibrium has confirmed the value for the M , obtained by Schwenke et al. (1980) and in ...
pam&blosum
... There are two main problems with the notion of the PAM units: 1. First, practically all the sequences we can obtain today are extracted from extant organisms. We almost do not know any protein sequences where one is actually derived from the other. The lack of ancestral protein sequences is handled ...
... There are two main problems with the notion of the PAM units: 1. First, practically all the sequences we can obtain today are extracted from extant organisms. We almost do not know any protein sequences where one is actually derived from the other. The lack of ancestral protein sequences is handled ...
Dynamin and the Actin Cytoskeleton Cooperatively Regulate
... involvement of actin in the fission reaction of endocytosis (Kaksonen et al., 2003; Merrifield et al., 2002, 2005; Yarar et al., 2005), the actin cytoskeleton may be an effector of dynamin in this reaction. Syndapin/PACSIN is an endocytic and actin regulatory protein that binds dynamin, synaptojanin ...
... involvement of actin in the fission reaction of endocytosis (Kaksonen et al., 2003; Merrifield et al., 2002, 2005; Yarar et al., 2005), the actin cytoskeleton may be an effector of dynamin in this reaction. Syndapin/PACSIN is an endocytic and actin regulatory protein that binds dynamin, synaptojanin ...
Midwest climate summary - US Soybean Export Council
... in the Western states (Kansas, Nebraska, and South Dakota). The Western Corn Belt region as a whole had average moisture levels of 10.1%. When protein levels are adjusted to an ‘as-is’ basis rather than a 13% moisture basis, the protein level of the average US soybean increased from 34.9 to 35.6%. S ...
... in the Western states (Kansas, Nebraska, and South Dakota). The Western Corn Belt region as a whole had average moisture levels of 10.1%. When protein levels are adjusted to an ‘as-is’ basis rather than a 13% moisture basis, the protein level of the average US soybean increased from 34.9 to 35.6%. S ...
Poster
... GatCAB Could Be Used As a New Method for Killing Certain Types of Antibiotic Resistant Bacteria As bacteria, such as Staphylococus aureus, become more resistant to a wide variety of antibiotics, new ways to kill these disease-causing bacteria are needed. Blocking GatCAB’s ability to fix misacylation ...
... GatCAB Could Be Used As a New Method for Killing Certain Types of Antibiotic Resistant Bacteria As bacteria, such as Staphylococus aureus, become more resistant to a wide variety of antibiotics, new ways to kill these disease-causing bacteria are needed. Blocking GatCAB’s ability to fix misacylation ...
Isolation by Calcium-Dependent Translocation to
... a protein of 42-kD, migrating as a double band, was associated with the specific granules, but neither with azurophil granules nor secretory vesicles/plasma membranes. Association with the organelles of this protein was detectable at a calcium concentration of 100 pmol/L and was further intensified ...
... a protein of 42-kD, migrating as a double band, was associated with the specific granules, but neither with azurophil granules nor secretory vesicles/plasma membranes. Association with the organelles of this protein was detectable at a calcium concentration of 100 pmol/L and was further intensified ...
Chapter 4.32
... traverses the endoplasmic reticulum (ER) and Golgi compartments. In N-glycosylation, a preformed oligosaccharide moiety is transferred en bloc from a long-chain isoprenoid lipid (dolichol) onto the specific N-glycosylation site via an N-glycosidic linkage to the asparagine (Asn) residue of a nascent ...
... traverses the endoplasmic reticulum (ER) and Golgi compartments. In N-glycosylation, a preformed oligosaccharide moiety is transferred en bloc from a long-chain isoprenoid lipid (dolichol) onto the specific N-glycosylation site via an N-glycosidic linkage to the asparagine (Asn) residue of a nascent ...
C7orf30 is necessary for biogenesis of the large
... Defects of the translation apparatus in human mitochondria are known to cause disease, yet details of how protein synthesis is regulated in this organelle remain to be unveiled. Here, we characterize a novel human protein, C7orf30 that contributes critically to mitochondrial translation and specific ...
... Defects of the translation apparatus in human mitochondria are known to cause disease, yet details of how protein synthesis is regulated in this organelle remain to be unveiled. Here, we characterize a novel human protein, C7orf30 that contributes critically to mitochondrial translation and specific ...
Lateral gene transfer and the evolution of plastid
... Chlorarachniophytes are amoeboflagellate algae that acquired photosynthesis secondarily by engulfing a green alga and retaining its plastid (chloroplast). An important consequence of secondary endosymbiosis in chlorarachniophytes is that most of the nuclear genes encoding plastid-targeted proteins h ...
... Chlorarachniophytes are amoeboflagellate algae that acquired photosynthesis secondarily by engulfing a green alga and retaining its plastid (chloroplast). An important consequence of secondary endosymbiosis in chlorarachniophytes is that most of the nuclear genes encoding plastid-targeted proteins h ...
Decision Document
... identities between the expressed protein and the known allergens that can be found in protein databases is the following: more than 35 % of identity in the amino acid sequence of the protein expressed, using an 80 amino acid window; or an identity of 6 contiguous amino acids. If such values are obta ...
... identities between the expressed protein and the known allergens that can be found in protein databases is the following: more than 35 % of identity in the amino acid sequence of the protein expressed, using an 80 amino acid window; or an identity of 6 contiguous amino acids. If such values are obta ...
Amino Acid Profiling and Nucleic Acid
... 2.4 Determination of protein, nucleic acid and essential amino acid contents The use of three extraction procedures and two fruits resulted in six protein isolates. The protein content of the samples was analysed using the Kjeldahl method (Horwitz and Latimer, 2005) while the nucleic acid content wa ...
... 2.4 Determination of protein, nucleic acid and essential amino acid contents The use of three extraction procedures and two fruits resulted in six protein isolates. The protein content of the samples was analysed using the Kjeldahl method (Horwitz and Latimer, 2005) while the nucleic acid content wa ...
Mechanisms of enveloped RNA virus budding
... trafficking from the Golgi and plasma membrane through the endosomal system to the lysosome (vacuole in yeast) (reviewed in [17]). Although the mammalian vacuolar protein sorting (Vps) pathway is more complex, the yeast and human pathways are similar in outline. Our discussion is therefore based mai ...
... trafficking from the Golgi and plasma membrane through the endosomal system to the lysosome (vacuole in yeast) (reviewed in [17]). Although the mammalian vacuolar protein sorting (Vps) pathway is more complex, the yeast and human pathways are similar in outline. Our discussion is therefore based mai ...
X(0,25) - IFSC-USP
... all bacterial genomes until variants are established by biochemical analysis. ...
... all bacterial genomes until variants are established by biochemical analysis. ...
Protein
... regulatory functions. Insulin, for example, is a protein hormone that plays a key role in regulating the amount of glucose in the blood. It is released from the pancreas in response to a rise in blood glucose levels and functions to lower those levels. Thyroid-stimulating protein (TSH) and leptin ar ...
... regulatory functions. Insulin, for example, is a protein hormone that plays a key role in regulating the amount of glucose in the blood. It is released from the pancreas in response to a rise in blood glucose levels and functions to lower those levels. Thyroid-stimulating protein (TSH) and leptin ar ...
2.21 Amino Acids.docx
... 2.21 Amino Acids Similar to carbohydrates, proteins contain carbon (C), hydrogen (H), and oxygen (O). However, unlike carbohydrates (and lipids) proteins also contain nitrogen (N). Proteins are made up of smaller units called amino acids. This name amino acid signifies that each contains an amino (N ...
... 2.21 Amino Acids Similar to carbohydrates, proteins contain carbon (C), hydrogen (H), and oxygen (O). However, unlike carbohydrates (and lipids) proteins also contain nitrogen (N). Proteins are made up of smaller units called amino acids. This name amino acid signifies that each contains an amino (N ...
Determination of Molecular Weight of
... *All three classes have identical core structure to the right of the dashed line. Variations may occur due to increased branching or the presence of other sugars. The values for partial specific volume are calculated on a weight basis using calculated partial specific volumes for individual sugar re ...
... *All three classes have identical core structure to the right of the dashed line. Variations may occur due to increased branching or the presence of other sugars. The values for partial specific volume are calculated on a weight basis using calculated partial specific volumes for individual sugar re ...
Lecture 4
... except for glycine and alanine, the two smallest amino acids in which the backbone polar groups dominate the behavior. On the other hand, cysteine and methionine, despite their polar sulfur atoms, tend to be buried in the interior of proteins, similarly to hydrophobic residues. Serine and threonine ...
... except for glycine and alanine, the two smallest amino acids in which the backbone polar groups dominate the behavior. On the other hand, cysteine and methionine, despite their polar sulfur atoms, tend to be buried in the interior of proteins, similarly to hydrophobic residues. Serine and threonine ...
Lecture 3: Introduction to Proteins
... Be very familiar with the approximate (“typical”) pK a values of the 7 ionizable R groups (side chains) and also the α-amino and α-carboxyl groups in peptides and proteins; note that numerical values of these "generic " pK a values for the ionizable functional groups in peptides and proteins will be ...
... Be very familiar with the approximate (“typical”) pK a values of the 7 ionizable R groups (side chains) and also the α-amino and α-carboxyl groups in peptides and proteins; note that numerical values of these "generic " pK a values for the ionizable functional groups in peptides and proteins will be ...
Protein reutilisation in corms of Colchicum autumnale
... fected by sugar starvation, these different proteolytic systems might be involved in starvation-induced proteolysis (Brouquisse et al., 1998). Proteins are hydrolysed to their amino acids by the sequential action of three types of enzymes: endo-, carboxy-, and aminopeptidases (Callis, 1995). Although ...
... fected by sugar starvation, these different proteolytic systems might be involved in starvation-induced proteolysis (Brouquisse et al., 1998). Proteins are hydrolysed to their amino acids by the sequential action of three types of enzymes: endo-, carboxy-, and aminopeptidases (Callis, 1995). Although ...
ER Membrane Protein Complex Required for Nuclear
... kar2 mutants were proficient for fusion at the permissive temperature but were defective at the nonpermissive temperature. Since there was no additional protein synthesis required in this system, the defect cannot result from an inability of mutant Kar2p to translocate or to assemble other factors r ...
... kar2 mutants were proficient for fusion at the permissive temperature but were defective at the nonpermissive temperature. Since there was no additional protein synthesis required in this system, the defect cannot result from an inability of mutant Kar2p to translocate or to assemble other factors r ...