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College of Medicine Microbiology Microbiology Dr.Jawad Kadhim Tarrad Dr.Bara Hamid Hadi Introduction: ----------------------------------------------------------------------------------------Medical microbiology: the field of microbiology is deal with study of pathogenic microorganisms and their interactions with human as causative agents of infectious diseases. It covers the branches of bacteriology, virology, mycology, parasitology and immunology. The microorganisms/microbes are microscopic living organisms which are very diverse and invisible by naked eye. They can be found in nearly every environment. The life in our planet is impossible without microbes due to their important role in the nature. Types of microbial pathogens : The pathogenic organisms of infectious diseases can be classified into five major groups of organisms : viruses, bacteria , fungi , parasites and prion. Viruses: are the smallest infectious agents (20 nm-300 nm). They are smallest 10,000 time than bacteria. Viruses are intact particles and acellular entities. They contain one type of nucleic acid, either DNA or RNA surrounded by protein coat. They are replicate only within living cells Bacteria : are single cells, larger and more complex than viruses. They have cell wall and possess both types of nucleic acid (DNA,RNA), but lack true nucleus and organelles( prokaryotic cell).They are replicate by binary fission. Fungi: are larger than bacteria and have more advanced cell structures. Fungi have true nucleus (eukaryotic cell), cell wall and cellular organelles. They are involved two types of organisms; yeasts (unicellular) and molds (multicellular). They are replicate by budding or mitosis. Parasites: they are include two types: protozoa: are general term used to refer to part of parasites which is unicellular eukaryotic cells, while helminthes (metazoan) are more complex , multicellular eukaryotic cells. They are replicate by budding or mitosis. Prions: infectious particles that are composed of only protein. These proteins have ability to cause disease. The prion diseases are called spongiform encephalopathies include: Scrapie disease in sheep, Mad cow in cattle, Kuru disease in human . Not all microorganisms are harmful for human, but most microorganisms are benefit. We swallow million microbes every day with not ill, but we are dependent on microorganisms to help us digest our food . Excellent example for benefit interaction between microbe and human is normal microbial flora. Normal microbial flora include various non-pathogenic bacteria and yeasts(with few protozoa) are permanent residents of certain body sites, especially skin, mouth, nose, colon and vagina , without cause any disease. All viruses and most parasites are not considered to be member of normal microflora. 1 All types of cells can be divided into two different types according to nature of nucleus: Prokaryote and Eukaryote . The differences between them are : 1. The eukaryotic cell has a true nucleus with multiple chromosomes surrounded by a nuclear membrane. The prokaryotic cell has not true nucleus but has single circular loosely chromosome in cytoplasm lacking nuclear membrane. 2. All types of cells contain both types of nucleic acid(DNA and RNA) , except viruses contain one type of nucleic acid ,either DNA or RNA. 3. The prokaryotic organisms are only unicellular, whereas eukaryotic organisms either unicellular or multicellular. 4. Eukaryotic cells contain cellular organelles (such as mitochondria, lysosome, large 80s ribosome, Golgi apparatus and others ), whereas prokaryotic cells contain no organelles except small 70s ribosome . 5. Most prokaryotes have rigid cell wall that contain peptidoglycan, whereas eukaryotes not contain cell wall but have flexible cell membrane, except fungi and plant cells have cell wall. 6. The prokaryotic cell (eg; bacteria) replicate by binary fission, whereas most eukaryotic cells replicate by mitosis. During which one parent cell divided to make two progeny cells. In contrast, viruses produce many copies of nucleic acid and protein , then reassemble into multiple progeny viruses. characters Prokaryote Eukaryote Cell type Unicellular Multicellular or unicellular Nucleus No Yes Chromosome One/plasmid >1 Ribosome Small 70s Large 80s Size 1-10 micron 10-100 micron Example Bacteria Fungi, protozoan 2 Classification of organisms: All types of organisms (microorganisms and macroorganisms) classified into five kingdoms: This classification scheme of organisms based on at least three major criteria: 1. Type of cell : prokaryotic or eukaryotic. 2. Level of cellular organization: either unicellular or multicellular. 3. Type of nutrition: autotrophic or heterotrophic. There are five kingdoms of living things. KINGDOM Type of cell Organism Monera Prokaryocyte Bacteria Actinomycetes Protista Eukaryocyte Protozoa Fungi Eukaryocyte Fungi Plantae Eukaryocyte Plants, Moss Animalia Eukaryocyte Arthropods Mammals Man Scientific nomenclature: Carolus Linnaeus (Sweden botanist, 1735) who have scientific nomenclature for all forms of life(organisms). Scientific name for organisms is consist of two parts (binomial nomenclature): genus and species. Genus: a grouping of organisms that are closely related phylogenically. Species: closely related strains that differ from all other strains. Latinic form: First name in binomial system for genus and second name for species. First letter of genus must be written in capital , whereas first letter of species must be written in small form . The Latinized name of genus and species for any organism must be written in Italic form or place line under each genus and species. Example: Staphylococcus aureus or 3 Staphylococcus aureus General properties of Bacteria: 1. The bacteria are prokaryotic cells which have not true nucleus but have single circular loosely chromosome in cytoplasm lacking nuclear membrane. 2. The bacteria are unicellular, and contain no cellular organelles except small 70s ribosome . 3. Most bacteria have rigid cell wall that contain peptidoglycan , some may have flexible or lack cell wall. 4. The bacteria replicate by binary fission. During which one parent cell divided to make two progeny cells. Morphology of bacterial cells: Shape : The bacteria are classified according to their shapes into four basic groups: Cocci : are spherical shape. Bacilli : are rods shape. Spiral–shape. Filamentous(ray-shaped) Pleomorphic bacteria: they appear in many shapes. Size: the size of bacteria ranged from 1 to 10 micrometer(µm). In general, cocci are about 1 micrometer in diameter, whereas bacilli are about 2-10 micrometer in length and 0.2-0.5 micrometer in width. N.B: Most cells of microorganisms, animals, and plants are measured in micrometer (µm), whereas viruses and cellular parts are measured in nanometer (nm). Arrangement of bacteria: Certain bacteria are arranged in single cell or in pairs, some in chains, and others in groups. The first microscope is invented by Antony V. Leeuwenhoek (Dutch), and he gives first description of microorganisms. Robert Hooke(English) first scientist observed and used term of cell. Ehrenberg(German) first scientist who used bacteria term. Louis Pasteur(French) is father of microbiology. Robert Koch (German) is father of clinical microbiology especially in field of bacteriology. L. Pasteur R. Koch 4