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Giant Marine Cyanobacteria Produce Exciting Potential Pharmaceuticals Cyanobacteria produce an array of exceptionally potent toxins, some with promising anticancer or other anti-disease activities William H. Gerwick, R. Cameron Coates, Niclas Engene, Lena Gerwick, Rashel V. Grindberg, Adam C. Jones, and Carla M. Sorrels ur standard procedure for collecting specimens of tropical marine cyanobacteria as potential sources for novel pharmaceuticals requires some of us to dive about 15 meters below the surface and 1 meter above the tropical sea floor, scanning the underwater landscape for giant colonies of marine cyanobacteria. In such settings, benthic cyanobacteria grow as nearly pure strains—forming tufts, mucilages, and mats that adhere to coral, algae, and marine invertebrate substrates (Fig. 1). Because cyanobacterial colonies grow in such profusion, we can collect them by hand in large enough quantities to investigate their chemical, pharmacological, and genetic properties. This approach contrasts with how microbiologists O Summary • Giant cyanobacteria that grow in marine environments produce an array of natural products, some of them potent toxins with promising anticancer or other anti-disease activities. • Filamentous marine cyanobacteria may yield promising natural products and, of these, Subsection III cyanobacteria are the source of nearly half the 800 reported compounds. • Such filamentous forms integrate features from the polyketide synthase and nonribosomal peptide synthetase pathways. • Marine invertebrate species are remarkable for how extensively they associate with marine microbiota, which produce many of the natural products that chemists isolate from those invertebrate sources. typically come to know particular microorganisms, often depending on elaborate manipulations and culture procedures to acquire adequate materials to study. In our case, however, the substantial capacities of some cyanobacteria for photosynthesis and nitrogen fixation enable them to reach localized population sizes that are inconceivable for so many other species of the microbial world. Of course, this physical stature also makes them subject to predation by fish, mollusks, and a variety of mesograzers. To defend themselves in this predator-rich environment, cyanobacteria produce an array of exceptionally potent toxins— often the very materials that are of such keen interest to us. Building in part on the pioneering efforts of the late Richard Moore during the 1970 –1990s at the University of Hawaii, we are continuing to determine structures and information about the biosynthesis and activities of natural products from marine cyanobacteria, working at Scripps Institution of Oceanography after moving from Oregon State University. These insights are helping us to better appreciate the role that marine invertebrate-associated cyanobacteria play in producing natural products in marine environments. Giant marine cyanobacteria, producing secondary metabolites with unusual structures and potent activities against cancer and other diseases, thus are an exciting area for microbial research. The genes and biochemical pathways responsible for making these metabolites are equally worthy of study and will help to address a series of puzzling questions regarding their natural William H. Gerwick is Professor of Oceanography and Pharmaceutical Sciences, R. Cameron Coates is Senior Research Assistant, Niclas Engene is doctoral student, Lena G. Gerwick is Research Scientist, Rashel V. Grindberg is doctoral candidate, Adam C. Jones is doctoral candidate, and Carla M. Sorrels is doctoral candidate at the Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, and the Skaggs School of Pharmacy and Pharmaceutical Sciences University of California San Diego, La Jolla, Calif. Volume 3, Number 6, 2008 / Microbe Y 277 times requires further analysis. In several cases, seemingly invertebratederived molecules instead trace to biosynthetic pathways that are associated with individual species of microorganisms or sets of microorganisms, including heterotrophic bacteria, cyanobacteria, and fungi. Furthermore, when one predicts the ultimate source of recently evaluated clinical trial agents based on chemical class and likely biosynthetic pathway for making them, many such agents (15 of 20) are products of single microbial genetic capacities. Thus, the potential of the sea to yield useful secondary metabolites rests not so much with its diverse macro-life forms, but rather, with its incredible microbiota. For the nearly 800 compounds reported from marine cyanobacteria (Fig. 2), the more advanced species such as the filamentous forms tend to yield promising natural products. Of these, Subsection III cyanobacteria, according (A) Collection of filaments of a marine cyanobacterium into plastic collection bags using to bacteriological systems of phylogSCUBA off the coast of Papua New Guinea. (B) Appearing as electric orange gelatinous eny, or the order Oscillatoriales by phyorbs, colonies of the marine cyanobacterium Schizothrix sp. from reefs near New Britain, Papua New Guinea. (C) Cultured strain of Lyngbya majuscula 3L in 10 L of BG11 medium, cological delineation, are the source of and (D) cultured L. majuscula 3L at high magnification showing that the filaments are nearly half the reported compounds. composed of coin-shaped cells (6.3 m long by 60 m diameter) and surrounded by a From the 17 genera in Subsection III, or polysaccharide sheath. 9 genera currently listed in the Oscillatoriales, Lyngbya dominates, with nearly 300 distinct substances coming chemistry, such as how microorganisms convert from this single genus. There are 12 marine methyl to trichloromethyl groups; how acetyspecies in this genus, and 236 compounds are lenic bromide groups are made; and what reacascribed to L. majuscula and a further 11 to L. tions form pendant carbon atoms at the C-1 bouillonii. positions of polyketides, some of which appear In contrast, other species of Lyngbya contribas cyclopropyl rings and others as vinyl chloride uted only a few metabolites; however, species arrangements. identification is rudimentary, making it likely that many sources are not identified to the speMarine Settings a Key Source of cies level because environmental factors affect Potentially Therapeutic Natural Products morphological features such as growth form, coloration, and cell size measurements, renderMarine bacteria have contributed at least 15 ing them taxonomically unreliable. natural products that are being evaluated in We recently began identifying cyanobacterecently concluded or in continuing clinical triria based on 16S rDNA internal transcribed als, especially as anticancer therapeutics. In spacer (ITS) sequences and other housekeepterms of the sources of the bacteria from which ing genes. This approach is revealing much those promising materials were collected, marine invertebrates such as sponges, tunicates, greater genetic diversity within this group than is generally appreciated. Many new speand mollusks account for three-fourths of these cies and perhaps genera await taxonomic dispromising molecules. covery—especially for isolates from marine However, rigorously determining the real environments because the preponderance of metabolic sources of these metabolites someFIGURE 1 278 Y Microbe / Volume 3, Number 6, 2008 Gerwick: Water Is Loved for Leisure and as a Source for Natural Products William Gerwick was about eight years old when he first saw an iridescent thread of seaweed shimmering below the surface in a tidal pool in Pacifica, a coastal town south of San Francisco, Calif. He was with his father on one of their outings that kindled his early interest in the ocean. “We would go to some of the tide pools outside San Francisco and poke around, and then have breakfast at the local fishermens’ coffee shop,” he recalls. The memory of that sliver of shining seaweed—and a desire to understand why it glowed under water, but not outside it— eventually led to his first scientific report, “Structural, chemical and ecological studies on iridescence in Iridaea (Rhodophyta),” published in the Journal of Phycology in 1977. It was based upon an undergraduate research project that he conducted at the University of California, Davis (UCD), with Norma Lang, now professor emerita. “This particular type of seaweed has a multilayered cuticle on its outer surface that works like a very sophisticated soap bubble,” Gerwick says. “It reflects certain wavelengths of light with brilliant intensity.” Born and raised in Oakland, Calif., Gerwick graduated from UCD in 1976 with a B.S. in biochemistry, received his Ph.D. in oceanography from Scripps in 1981, and later did research in pharmacy at the University of Connecticut. Gerwick, 53, a professor of medicinal and natural products chemistry at the Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography and Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of Cali- fornia, San Diego, continues to call himself “a water person.” In his professional capacity, he and his students search the seas for natural products that might become medicines. More generally, he adds, “I love to be in the water and doing things in the water, and my happiest place to be at the end of a long day is in the hot tub. “We go out into the field and collect samples,” he says, describing his research and work. “I travel with my students and we go somewhere for two or three weeks, oftentimes scuba diving 3 or 4 times a day, surveying species and collecting algae of interest to us. We can’t predict what will contain a compound of interest, so we collect small amounts of everything and bring them back to San Diego to test them for biological activities. We’ve had some promising compounds move to preclinical stages.” The research “fascinates and intrigues me, and satisfies my personal curiosity,” Gerwick says. Moreover, he likes teaching. “Students . . . after all. . . outlive us.” Sometimes the research also scares him, particularly when it entails close encounters with sharks. “We were diving off the Pacific coast of Mexico, myself and a graduate student at the time, Valerie Paul (currently Head Scientist of the Smithsonian Marine Laboratory in Ft. Pierce, Fla). We jumped in the water, went down about 40 or 50 feet, and came upon a fairly large shark. He was only seven feet long, but of considerable girth. It was a grey reef shark—very territorial. This one came swimming directly toward us. “Usually sharks will swim by you, and then come back,” he continues. “But this one was behaving very aggressively, swimming in tighter and tighter. I guess he was coming in for a test nibble. I’d been diving a few months earlier in the Galapagos, where I’d seen lots of sharks and where it is the custom to dive with a poker. I had one with me. I gave it a pretty good poke in the nose. I hit it pretty hard, and it took off. I turned around and saw that Valerie had brought an underwater movie camera and had been filming the entire thing.” Instead of retreating to the safety of their boat, he adds, “We continued to collect algae, finished our dive, and had a good story when we came up.” Gerwick is married with two children: a son, 22, who is a graduate student in particle physics at the University of Edinburgh in Scotland, and a daughter, 24, who is a science writer for the communications office of the Oregon Health Sciences University in Portland. His wife, Lena, has a background in medicine and a Ph.D. in immunology, based on research studying fish and their immune systems. With their children grown, the couple now shares their home with Oliver, a Jack Russell terrier. They also share labs. “Upon our move to Scripps/UCSD nearly three years ago, my wife and I merged our laboratory efforts such that we have several shared grants and research projects, as well as separate projects,” he says. “Our labs and offices are contiguous, and we spend a lot of time together at work and home.” Marlene Cimons Marlene Cimons is a freelance writer in Bethesda, Md. Volume 3, Number 6, 2008 / Microbe Y 279 terize biosynthetic gene clusters responsible for making specific natural products in cyanobacterial species. Complementing this approach is one that relies on analysis of the growing number of cyanobacterial genome sequences that are or soon will be available. For instance, by early 2008, sequencing of 29 cyanobacterial genomes was complete, while analyses of another 46 such genomes were under way. The initial natural products focus is on genes encoding polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) pathways. Together, this genetic information reveals that the more advanced filamentous forms of cyanobacteria are rich in modular biosynthetic pathways that integrate features from both the PKS and NRPS families. In some cases, a single cyanobacterial genome contains multiple pathways, making cyanobacteria resemble some streptomycetes and myxobacteria in this respect. With only a small fraction of the compounds putatively encoded by these biosynthetic pathways isolated or characterized, cyanobacteria are an opportunity-rich frontier for identifying natural products with potential medical utility. To address those opportunities, researchers are developing a growing number of innovative methods with which to detect, isolate, and determine chemical structures and bioPie charts of a) the secondary metabolites reported from the various groups of marine logical properties of those molecular cyanobacteria (Types I to V with botanical order equivalents provided), and b) the metabolites of the Type III cyanobacteria (Oscillatoriales) separated by genus (data from products. For example, we devised a the MarinLit® database). strategy for using bioinformatics to guide isotope-labeled, precursor-feeding experiments that we call the genoisolates whose taxonomies were characterized misotopic approach. in this way came from freshwater environMeanwhile, developing knowledge of regulaments. tory gene sequences and their protein transcriptional modulators also looms as critical for unProbing the Biosynthetic Genes that covering the full natural products capacity of Yield Valuable Natural Products FIGURE 2 We and others are investigating how secondary metabolite biosynthetic genes are distributed in cyanobacteria. For example, members of our group along with David Sherman and his collaborators at the University of Michigan (UM), Ann Arbor, are beginning to isolate and charac- 280 Y Microbe / Volume 3, Number 6, 2008 Figure 3 (facing page). (A) Natural products of marine cyanobacteria discussed in text with their principal biological properties in human health oriented assays. In panels B-D, the genes, encoded proteins, and deduced catalytic domains in the (B) curacin A biosynthetic gene cluster, (C) hectochlorin biosynthetic gene cluster, and (D) lyngbyatoxin biosynthetic gene cluster. FIGURE 3 Volume 3, Number 6, 2008 / Microbe Y 281 tive when tested against a cancerous mammalian cell line, and this finding led us to isolate a lipid that we named curacin A (Fig. 3). Subsequently, we determined that curacin A inhibits tubulin polymerization through interactions at the colchicine-binding site. While various scientists developed several routes for synthesizing it, we began exploring how it is made biochemically. Our initial approach involved feeding stable isotope-containing precursors to L. majuscula in culture, followed by nuclear magnetic resonance (NMR) analysis of labeled curacin A. These efforts led us to collaborate closely with David Sherman and his colleagues at UM and, subsequently, to isolate the gene cluster that encodes enzymes responsible for synthesizing curacin A. We are continuing to characterize that gene cassette as well as the enzymes that catalyze formation of the cyclopropyl ring in curacin A (Fig. 3). This remarkable set of biochemical reactions uses three acetate molecules (plus coenzyme A) to produce a single enzyme-bound molecule of 3-hydroxyImaging of the sponge-cyanobacterial cell assemblage Dysidea herbacea with its cyanobacterial symbiont Oscillatoria spongelae by light microscopy (A) and epifluorescence 3-methylglutaryl acyl carrier protein microscopy (B) showing short rods of cyanobacterial cells surrounded by irregular sponge (ACP), which is the branched 6-carbon cells. (C) Control epifluorescence micrograph showing location of cyanobacterial cells. (D) precursor for terpenes. A series of adThe same micrograph as in panel C probed with the sponge-derived halogenase gene probe (CARD-FISH) showing that this unique halogenase, responsible for creating ditional reactions converts this precurtrichloromethyl groups as in barbamide, is exclusively located in the cyanobacterial cells. sor into a 5-carbon cyclopropyl-con(Reprinted from P. M. Flatt, J. T. Gautschi, R. W. Thacker, M. Musafija-Girt, P. Crews, and taining alkyl chain. Because several of W. H. Gerwick, Marine Biol. 147:761-774, 2005, with kind permission of Springer Science and Business Media.) these reactions involve novel biochemical transformations, we are continuing a detailed mechanistic investigation that these photosynthetic bacteria. For example, we includes X-ray crystallographic analysis of several recently began using methods similar to those of these enzymes. developed by Rolf Müller of Saarland University Similar gene cassettes are found in other main Saarbrücken, Germany, to study regulatory rine cyanobacterial natural product biosynthetic pathways in myxobacteria. Our efforts are startpathways. However, they yield different strucing to reveal some previously unrecognized regtures such as the vinyl chloride function in the ulatory mechanisms in cyanobacteria. natural product called jamaicamide A. Hence, we are investigating how highly comparable Cyanobacteria from Caribbean Yield gene pathways and enzymes lead to such diverPotent Anticancer Candidates gent functional groups. We launched a program in 1993, surveying maAdditional Promising Natural Products rine algae and cyanobacteria in Curaçao in the from Marine Cyanobacteria southern Caribbean for bioactive natural products. The extract of one shallow-water marine An organic extract of a small tuft of L. majuscyanobacterium, L. majuscula, was highly accula that was collected in 1996 near the eastern FIGURE 4 282 Y Microbe / Volume 3, Number 6, 2008 shore of Jamaica yielded powerful anticancer cell activity. Because the sample extracts were insufficient for chemical studies, viable material from a single filament was clonally expanded, and it yielded two exceptionally interesting secondary metabolite classes, designated the jamaicamides and hectochlorin (Fig. 3). Hectochlorin proved to be the agent responsible for that initial, powerful cancer cell toxicity, whereas the jamaicamides displayed moderate neurotoxic properties. Jamaicamide A incorporates three distinct functional groups whose biosynthetic origins remain poorly understood—namely, a vinyl chloride appendage on a polyketide, a terminal acetylenic bromide, and a pyrrolidone ring. While we deduced the fundamental building blocks of jamaicamide A from a series of experiments involving the use of stable isotope-labeled precursors, figuring out the biosynthetic chemistry that leads to its assembly required us to take a molecular genetics-based approach. Thus, we developed a cloning strategy that yielded a 58-kb gene cluster, which encodes the proteins that catalyze jamaicamide biosynthesis. We are continuing to investigate the steps that form the distinctive vinyl chloride functionality of this terpene variant. We also are investigating hectochlorin biosynthesis, focusing on the origin of the gemdichloro functionality within its polyketide and on the basis for the two different regiochemical incorporation patterns of 2,3-dihydroxyisovaleric acid (Fig. 3). We find high sequence homology of hctB with barB1 and barB2, which are two marine examples of radical halogenases that we discovered within the barbamide biosynthetic gene cluster that specifically halogenate a methyl group. The hctB gene encodes a radical halogenase that catalyzes chlorination of a carbon atom other than a methyl group. We are collaborating with Christopher Walsh at Harvard University and his collaborators, seeking to explain the structural basis for this alternate regiochemical selectivity. Drifting Tufts of Cyanobacteria Can Produce Biologically Active Agents Sometimes waves and currents dislodge cyanobacterial filaments. Those filaments, in turn, excrete a slimy mucilage that entraps bubbles of photosynthetically derived oxygen, floating the filaments to the surface where they continue to grow with other plankton. Sometimes these floating assemblages drift as large cyanobacterial tufts, and are common in places such as Hawaii and northeastern Australia. Some dislodged and drifting strains of cyanobacteria produce extremely potent dermatotoxins that cause harm in near-shore environments, especially when they are being used by local swimmers or water-loving tourists. In Hawaii, this phenomenon gives rise to sporadic bouts of swimmer’s itch, whose immediate cause is an alkaloid, that Richard Moore of the University of Hawaii described in 1979 and named lyngbyatoxin A (Fig. 3). It contains a number of noteworthy structural features, including a lactam ring, a reduced phenylalanine carboxyl group, and a reverse-prenylated indole. Some strains of L. majuscula produce another type of dermatotoxin, called aplysiatoxin. Because of the potential public health benefits from understanding better how these environmental toxins are produced—and also out of pure curiosity—we began characterizing biosynthetic gene clusters in toxin-producing cyanobacteria collected near Hawaii. Before beginning, we recognized that, early in the process, the NRPS involved in producing lyngbyatoxin likely forms a peptide bond between valine and tryptophan. Moreover, a biochemical reduction reaction likely releases that dipeptide from the NRPS complex. This hypothesis was recently confirmed by Walsh and his collaborators at Harvard, who characterized the reductive mechanism for releasing the lyngbyatoxin dipeptide from its NRPS complex. With those biochemical steps in mind, we devised a cloning strategy to isolate the biosynthetic gene cluster. From a bioinformatic analysis of the cluster, we postulate that a cytochrome P450 activates the phenyl ring of tryptophan such that the lactam ring of lyngbyatoxin can be formed. Next, a reverse prenylation at the opposite side of this ring occurs, possibly first at the indole nitrogen atom, and then through a Claisen-type rearrangement, moving to the final C-7 location. Many Natural Products Derive from Invertebrate-Associated Microorganisms Microorganisms produce many of the natural products that chemists isolate from marine in- Volume 3, Number 6, 2008 / Microbe Y 283 vertebrate sources. More generally, marine invertebrate species are remarkable for how extensively they associate with marine microbiota. For instance, some sponges consist of 40% bacteria by weight! These and other marine invertebrates harbor diverse microorganisms, sometimes benefitting through rich suites of microbially produced chemicals that protect these sponges or other hosts against predators or pathogens. Meanwhile, however, microbiologists have had little success trying to cultivate these invertebrate-associated microorganisms. Hence, little is yet known about precisely which microorganisms are producing the secondary metabolites. To date, most insights come from non-culturebased methods, including cell separations, imaging with immunogold reagents, direct imaging that depends on spectral features of the molecule under study, catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH) to localize biosynthetic genes within particular cell types, and mass spectrometric imaging (MSI) (Fig. 4). Although MSI rapidly and directly determines where natural products are located in complex assemblages, even this type of information sometimes can prove misleading. Thus, for example, one cell type might produce and then secrete a particular compound that is then selectively absorbed by a second cell type. This sce- nario apparently explains earlier confusion over the origins of cyclic peptides that are associated with the tunicate Lissoclinum patella. Researchers thought that this tunicate produces cyclic peptides in its own tissues. However, subsequent studies involving gene cloning, expression, and genomic sequencing indicate that symbiotic cyanobacteria actually produce these peptides. It is possible that through the process of metabolite excretion from this microbial source that they can accumulate and be detected in the tunicate tissues. These giant marine cyanobacteria are indeed an exciting area for microbial research. Their structurally novel secondary metabolites arise from unique biochemical pathways and machinery that are equally worthy of study. Complementing this structural and biosynthetic novelty, the activities of some of these metabolites are exerted through new mechanisms that reveal innovative pathways with pharmacological potential. From the phylogenetic relationship of these organisms, the evolution of their natural product pathways, and the structures and activities of their metabolites, these organisms have much to teach us, much to provide in terms of useful products and bio-chemical tools, and ultimately, much to inspire us with through integration of natural products chemistry and microbiology. SUGGESTED READING Corre, C., and G. L. Challis. 2007. Heavy tools for genome mining. Chem. Biol. 14:7–9. Donia, M. S., B. J. Hathaway, S. Sudek, M. G. Haygood, M. J. Rosovitz, J. Ravel, and E. W. Schmidt. 2006. Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians. Nature Chem. Biol. 2:729 –735. Edwards, D. J., and W. H. Gerwick. 2004. Lyngbyatoxin biosynthesis: sequence of biosynthetic gene cluster and identification of a novel aromatic prenyltransferase. J. Am. Chem. Soc. 126:11432–11433. Flatt, P. M., J. T. Gautschi, R. W. Thacker, M. Musafija-Girt, P. Crews, and W. H. Gerwick. 2005. Identification of the cellular site of polychlorinated peptide biosynthesis in the marine sponge Dysidea (Lamellodysidea) herbacea and symbiotic cyanobacterium Oscillatoria spongeliae by CARD-FISH analysis. Marine Biol. 147:761–774. Hildebrand, M., L. E. Waggoner, G. E. Lim, K. H. Sharp, C. P. Ridley, and M. G. Haygood. 2004. Approaches to identify, clone, and express symbiont bioactive metabolite genes. Natural Product Rep. 21:122–142. Newman, D. J., and G. M. Cragg. 2007. Natural products as sources of new drugs over the last 25 years. J. Natural Products 70:461– 477. Rachid, S., K. Gerth, I. Kochems, and R. Müller. 2007. Deciphering regulatory mechanisms for secondary metabolite production in the myxobacterium Sorangium cellulosum So ce56. Mol. Microbiol. 63:1783–1796. Ramaswamy, A. V., C. M. Sorrels, and W. H. Gerwick. 2007. Cloning and biochemical characterization of the hectochlorin biosynthetic gene cluster from the marine cyanobacterium Lyngbya majuscula. J. Natural Products 70:1977–1986. Simmons, T. L., R. C. Coates, B. R. Clark, N. Engene, D. Gonzalez, E. Esquenazi, P. C. Dorrestein, and W. H. Gerwick. 2008. Biosynthetic origin of natural products isolated from marine microorganism-invertebrate assemblages. Proc. Natl. Acad. Sci. USA 105:4587– 4594. Simmons, T. L., and W. H. Gerwick. 2008. Anticancer drugs of marine origin, p. 431– 452. In Oceans and human health. Elsevier, Academic Press, Burlington, Mass. Van Wagoner, R., A. K. Drummond, and J. L. C. Wright. 2007. Biogenetic diversity of cyanobacterial metabolites. Adv. Appl. Microbiol. 61:89 –217. 284 Y Microbe / Volume 3, Number 6, 2008