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Biology 30 Module 4 Organic Variation Lesson 15 Genetic Variation and Biotechnology Copyright: Ministry of Education, Saskatchewan May be reproduced for educational purposes Biology 30 49 Lesson 15 Biology 30 50 Lesson 15 Lesson 15 Genetic Variation and Biotechnology Directions for completing the lesson: Text References for suggested reading: Read BSCS: An Ecological Approach Pages 199-220, 323, 552-558 OR Nelson Biology Pages 502, 658-665, 673-675 Study the instructional portion of the lesson. Review the vocabulary list. Do the practice problems. Do Assignment 15. Biology 30 51 Lesson 15 Vocabulary adaptive radiation anthropoids biotechnology chemical nature of cells coevolution convergent evolution divergent evolution functional changes gene pool Biology 30 genetic equilibrium genetic drift Hardy-Weinberg Law population genetics speciation species structural changes transgenic 52 Lesson 15 Lesson 15 – Genetic Variation and Biotechnology Introduction Organic variations or the evolving of life forms have been examined from several perspectives now. Evidences of changes, peoples’ attitudes and thoughts about them, and the “how” and the “why” of such changes, have been presented on the basis of the most current information. One should keep in mind the rapidity with which new information is being uncovered. This means that today’s theories or conclusions about origins and changes in life in the past and present, could be modified or changed very shortly. In the early history of primate development, the human role in the changes occurring to the physical and biotic aspects of environments was minimal – almost as a passive participant. Gradually, expansion of culture and knowledge allowed humans to exert increasing dominance over other living forms, as well as to modify and control physical conditions. By doing so, a passive participant in many aspects of evolution began to assume a more active role. Through hunting, domestications of plants and animals and then modifications of habitats for agriculture, humans began to control the direction of change of many species around them. More rapid gains in knowledge have led to the developments of more complex tools, machines and processes. The uses of these have placed humans into a present position of easily being able to sustain or to extinguish the lives of many other organisms. Technology has also reached the stage where there are more attempts, with varying degrees of success, to “design” or to change species by altering their genetic components. This means that humans could exert increasing control in the ways some species, including humans themselves, could evolve or change. This lesson will examine some technologies and the human use of these, especially in relation to changing species or “creating” new ones. In doing so, it will probably bring out issues and questions that are even now being discussed and debated in public. Many of these relate to how far humans should go in manipulating genetic identities of organisms, the procedures that should be followed, the reasons for doing so, and how the outcomes should be utilized. The opinions, viewpoints and convictions of individuals and groups will no doubt be as varied and as strongly voiced as those for origins of life and evolution. Biology 30 53 Lesson 15 After completing this lesson you should be able to: • define “gene pools” and explain the Hardy-Weinberg Law with respect to gene pools. • define genetic drift and discuss some of the conditions which could promote it. • discuss speciation, especially with respect to the manner in which it may occur. • describe some of the roles humans may play in speciation. • explain what coevolution is and why it occurs. • discuss primate evolution, with a particular emphasis on the human line. • explain the meaning of biotechnology. • discuss the general impact that artificial selection has on gene pools and species changes. • describe the relationships between habitat modifications, species numbers and genetic pool diversities. • explain the meaning of cultural evolution and identify some examples. • describe some of the effects of agriculture, primarily of the western methods utilizing extensive cultivation and monoculture, on evolution. • recognize some of the effects of social-economic conditions of human populations on natural resources and species. • summarize some of the abilities scientists now have in the area of genetic engineering and the implications these have for species changes. • discuss some effects that transgenic plant or animal varieties could have on prairie agriculture. • recognize and consider some of the questions and issues that will be receiving more attention, as the human ability to manipulate genetic changes grows. Biology 30 54 Lesson 15 Population Genetics and Applications to Evolution Much of what has been described and discussed thus far has included beliefs, generalizations and theories. These have been based on what has passed down through generations or various physical and geological evidences from the past. Scientific explanations and theories have been subject to changes or modifications, as new methods of gathering information and new knowledge or evidences have appeared. The areas of genetics and population studies have played prominent roles in the last one hundred years. These areas have been able to supply new information to help answer one of the questions which has been bothering evolutionists for so long – that is, how evolution possibly proceeded in species. This section will look at some of these areas of information. Genetic Variation and Natural Selection For a species or population to change, variations must first appear in the body or cell characteristics of some individuals. In other lessons it was pointed out that the main sources of variation are: genetic recombinations, during meiosis and fertilization in the process of sexual reproduction. Another major source of variations is mutation. Again, mutagens and mutations were examined in earlier lessons. Chromosomal and gene changes can have varying effects in cells and organisms, depending on which genes are involved and how many of them are included in a change. An important consideration from a species standpoint is whether or not these variations can be passed on from an individual to its offspring. There would be little effect on a species if a mutation should occur in a body cell rather than a germ cell or gamete, for that new characteristic would not be passed on. Variations also have little or no benefit to a species if individuals are sterile or are incapable of passing on their genes to a large number of offspring. The latter situation is often evident in animal groups where males and/or females assume orders of dominance and only certain individuals engage in reproduction. The ability of some individuals to leave more offspring than others is usually related to natural selection. Any particular environment has selective forces (or limiting factors) favouring the survival of organisms having certain traits. Abiotic or biotic selective forces could include such factors as climatic conditions, landscape features, food supplies, predators and others. Organisms which have characteristics enabling them to better deal with a particular environment at a particular time, are considered to be well-adapted. Such individuals are more likely to survive and are also usually the best reproducers. In a way, the process of natural selection “directs” changes in populations through the reproductive abilities of individuals. Biology 30 55 Lesson 15 Genetic variation and natural selection can lead to diversities of many kinds. These can range from: Hardly noticeable structural changes in cells to visible changes in body organs or parts. Structural changes are often accompanied by various degrees of functional changes. A species in which webs may have developed between the toes of feet may then use its feet more for swimming than land use. Besides structural and functional changes, alterations could also appear in the chemical nature (biochemistry) of cells or organisms and even in the general behaviours of some organisms. At certain times of the year, a species may experience significant behavioural changes from those at other times of the year. Reproductive behaviours often change the appearances or behaviours of individuals in many species. Mutations affecting such appearances or behaviours could have significant effects on the reproductive successes of individuals involved. Separation or fragmentation of groups within species and such conditions as isolation from each other and different selective forces (environments) could lead to the development of entirely different species. Population Genetics and the Hardy-Weinberg Law Population genetics is concerned with the relative frequencies of dominant and recessive alleles in a population of interbreeding organisms. Geneticists doing population studies use the term gene pool to refer to all the possible genes within a population at a given time. If a species or population was to change or evolve over time, it means that a change must take place in its gene pool. A change in a gene pool could involve the appearance of new genes from either mutations or an inflow from other populations. Certain genes could disappear, especially if they are dominant and new selective forces begin to act against them, or if a population is small and some individuals leave. The usual change in gene pools involves the frequency of individual alleles or genes. Rather then appearing or disappearing, the numbers of particular ones will either rise or fall. A population is in genetic equilibrium when the gene pool remains constant from one generation to the next. Conditions must be “ideal” for genetic equilibrium to occur. The ideal conditions would be as follows: 1. The population must be very large. 2. The mating must be random. 3. The population is isolated. There are no net movements of genes in or out of the pool. 4. No mutations occur. 5. There can be no selection advantages. (No natural selection occurs). There must be equal viability, fertility, and mating ability of genotypes. This means that all genotypes have equal reproductive success. Biology 30 56 Lesson 15 In 1908, an American and a German researcher independently published their conclusions about frequencies of genes in gene pools. These became part of the Hardy-Weinberg Law. The Hardy-Weinberg Law states that the frequencies of the alleles for a given trait in a population remain the same (are stable) from generation to generation, under conditions of genetic equilibrium. (As stated in 1-5 on the previous page.) In addition, the Hardy-Weinberg Law established equations that could be used to predict allele and genotype frequencies in populations that were relatively stable at particular times. If populations are changing, applying one of two equations will confirm a change more readily (if the figures don’t fit into the equation). If populations are stable for a time, application of the equations will usually produce a fairly accurate prediction of frequencies of particular alleles and genotypes. 1. The first equation derived from the Hardy-Weinberg Law is used in determining the frequency of two alleles for one trait. This equation is: p+q=1 Let: p stand for the frequency of the dominant allele. q stand for the frequency of the recessive allele. For example, the two alleles could be B (brown eyes) and b (blue eyes) of the trait eye colour. If these are the only two alleles for that trait in the population, the sums of their frequencies add up to l00%, or 1, in the equation. From previous work involving dominant-recessive interactions between alleles, information can be pointed out in the preceding example of eye colour: Two phenotypes are possible. The phenotypes are brown eyes and blue eyes. The number of genotypes possible is three: BB, Bb and bb. The genotypes of recessive phenotypes are easy to identify, since they can only appear in homozygous conditions (bb). The dominant phenotype, on the other hand, can be either homozygous or heterozygous (BB, Bb). Biology 30 57 Lesson 15 2. In trying to determine the frequencies of the alleles (B and b) and the three genotypes (BB, Bb. Bb), a second equation can be used. This binomial expression is obtained by squaring (p + q), to arrive at: p2 + 2pq + q2 = 1 where: q2 stands for the frequency of the individuals in the population showing the recessive trait (bb). 2 p stands for the frequency of homozygous dominant individuals (BB). 2pq then includes all the heterozygotes (Bb). Example: Suppose a geneticist was trying to determine the frequency of alleles for brown eyes and blue eyes in a sample population. The researcher noted that 84% of all individuals were brown-eyed. Solution: Determine the frequency of both alleles: 1. Work with a figure that is definitely known. That is the frequency of blue-eyed individuals (the recessive trait bb), which is 16% (100 - 84). 16% can be converted to a decimal form (16/100), which is 0.16. (This is the frequency of the individuals showing the recessive trait, q2.) 2. If q2 = 0.16, take the square root of q2 q to find q. (Use a 2 calculator that has the function.) q= 0.4 or 40% of the alleles in the population are those for blue eyes. (Remember q = frequency of the recessive allele (b).) 3. Use the first equation from the Hardy Weinberg Law, where p + q = 1. The calculation for q was done in number 2. Substitute for q and solve for p. p + 0.4 = 1 p = 1 – 0.4 p = 0.6 The frequency of the dominant allele, brown (B), must therefore be 0.6 or 60% of all the alleles. 4. If the geneticist wished to know how many of the brown-eyed individuals were homozygous (p2) and how many were heterozygous (2pq), the second equation could be utilized. p2 + 2pq + q2 = 1 Knowing that: then Biology 30 p = 0.6 q = 0.4 p2 = (0.6)2 = 0.36 2pq = 2(0.6)(0.4) = 0.48. 58 Lesson 15 5. Check to see if you are correct: p2 + 2pq + q2 = 1 0.36 + 0.48 + 0.16 = 1 1 = 1 This means that: 36% of the population is homozygous brown-eyed (BB). 48% is heterozygous brown-eyed (Bb). 16% of the population is homozygous brown-eyed (bb). The other observation made by both Hardy and Weinberg was that even if one allele had a very high frequency and the other was very low, those frequencies would not change in a stable population. Note: The Hardy-Weinberg equation applies to populations that are not changing (are non-evolving). If the gene pool of a population changes, then the frequencies in the population will NOT fit those predicted by the equation. Genetic Drift Selective forces of particular environments, or natural selections, are often cited as the major reasons for changes in gene pools and populations. However, natural selection does not always account for the manners in which certain changes occur. Certain chance events could cause a gene pool to change in a direction not entirely determined by environment. This is more common in smaller populations or in populations that are experiencing sudden increases or decreases. For instance: 1. In a small group of individuals (like a pack of wolves), there may only be one dominant pair that engages in breeding. This means that only part of that pack’s gene pool is utilized and future generations could show a change in frequencies of particular genes. This could be even more noticeable if a mutation appears and it just happens to be in one of the individuals engaged in reproduction. The mutant gene or genes will increase fairly rapidly in the pool. 2. Sudden changes or actions in a certain environment could also have unique Biology 30 59 Lesson 15 effects on certain population groups. A fatal disease could wipe out many members of one group, changing the frequencies of genes in the remaining gene pool. 3. A small group may separate from a larger one and establish another breeding group elsewhere. The few individuals that initially break away may carry gene frequencies that are not the norm for the larger group. Again, it is a matter of chance just which individuals are involved or affected. Speciation Hardy and Weinberg formulated the principle that, normally, gene frequencies in populations tend to remain the same. However, exceptions to most conditions or situations can generally be found and this is true for many populations. As a result of the exceptions, genetic differences can appear and accumulate to the point where significant changes in species can develop over time. If the changes are great enough, new species may arise from previous ones. A species is any natural population whose members can interbreed to produce fertile offspring. Organisms which cannot, or do not, ordinarily interbreed to produce fertile offspring are commonly regarded as belonging to separate species. From the standpoint of gene pools, one could say that a species is group of individuals whose members share a common gene pool. This gene pool would be unique and isolated from the gene pools of other species. DNA sequences would be shared by species that are close. They would share similar proteins. The more similar the nucleotide sequences the closer the relationship between the organisms. The section will briefly look at some mechanisms in speciation or the development of new species from pre-existing ones. It could show how adaptive radiation and speciation could result in divergent evolution among various groups. A relatively free exchange of genes among all members of a species tends to maintain uniformity of characteristics within that species. Maintaining this similarity in the chromosomes and genes keeps species groups intact. Any conditions that somehow split up members of one species and keep the sub-groups separate from each other would encourage the opposite effect. Genetic differences could begin to appear between the sub-groups and, if subjected to different environmental selective forces, Biology 30 60 Lesson 15 differences between them could keep on increasing. Eventually, a point could be reached at which the sub-groups are so different that, even if reunited, successful interbreeding will not be accomplished. Such groups are then regarded as belonging to separate species. Migration is a frequent cause of splits developing in a species. Separations can happen as an entire population is moving or if some members have an urge to move before others do. Once a split develops, isolation is usually the next important step in the development of a new species. Preventing a gene flow between separated groups allows gene pools to change in their own unique ways. Isolation can be maintained in a number of possible ways: 1. After an initial separation, geographic isolation is probably the most common. Groups may eventually come to be separated by considerable distances. 2. Physical barriers such as mountains, canyons, rivers, forests and even human-made barriers such as highways and pipelines may serve to keep groups apart. 3. Additional kinds of isolation could come into play once genetic differences begin to appear. Genetic variations and natural selection come into effect once groups are split and isolated from each other. Different genetic variations between groups could be the result of different kinds of recombinations (during sexual reproduction), different (random) mutations and genetic drift. Genetic drift is common to smaller groups and could result in either good or bad changes in relation to the environment. Selective forces could then play a part in deciding whether a population decreases or increases. Biology 30 61 Lesson 15 Genetic variations and changes between isolated groups can stop short of changing them into separate species. Reuniting them can result in successful interbreedings. However, genetic differences could have resulted in some distinctive appearances between the groups. This gives rise to the different breeds, varieties or races, of organisms. Speciation occurs after a geographical barrier (geographic isolation) prevents gene flow between populations that originally belonged to a single species. In the diagram below, a single population of flies was divided into two –with each being feed different foods and being geographically isolated from each other. After several generations had passed and the groups were mixed, no interbreeding would occur. The appearance of certain genetic variations between groups can lead to additional kinds of reproductive isolations, where certain individuals will not interbreed with each other. Slight changes in the genetic nature can affect such things as physical characteristics, reproductive patterns and behaviour patterns. Differences in physical sizes, features and possibly (colour) markings could make members of separate groups avoid each other reproductively. Behaviour patterns can do the same thing. For instance, individuals of some species must follow very ritualized types of courtship if successful mating or spawning is to take place. If a partner in a courtship initiated by another partner does not attempt, or does not follow, the correct sequence, reproductive behaviour usually stops. Reproductive isolation can also come about through groups breeding at different times or in different seasons or possibly in different places. In some instances, members of different species may actually carry out successful fertilization or spawning. However, genetic differences may have reached the point where embryos fail to develop or, if hybrids result, such individuals are sterile. The development of different species is often associated with adaptive radiation. In this process, groups that have split and spread apart are subjected to different selective forces. In time, members of sub-groups that are successful in surviving will have experienced evolutionary adaptations making them better suited to their new environmental conditions. An evolutionary adaptation can be regarded as any genetic characteristic that somehow increases an organism’s fitness or chance of Biology 30 62 Lesson 15 surviving. From an evolutionary viewpoint, adaptive radiation can be looked upon as an instance of divergent evolution. Groups spread out from a common ancestral form to give rise to distinctly different individuals. The camel family is a good illustration, with members ranging from South America (llama, alpaca...) to Asia and to the Middle East (Bactrian camels and dromedaries). In an opposite type of development, convergent evolution is also evident. Groups of entirely different origin, subjected to similar selective forces, could come to look very similar – although still remaining as separate species. Previous examples of some Australian marsupials having placental “look-alikes” on other parts of this planet bear this out. The Human Role in Speciation If speciation does occur under natural conditions, it generally takes a long time for most organisms. Becoming more and more apparent are human-influenced speciations or evolutions taking place in shorter time intervals. This has been most noticeable in domestic plants and animals. Humans have removed or separated organisms from others subjected them to isolation and (artificial) selection and in so doing, have brought about transformations in gene pools. Such transformations are evident in different breeds, varieties and even new species of plants and animals. Many other forms of human-influenced evolutions have not been directly planned. The uses of antibiotics and chemicals (pesticides) have resulted in the appearances of new strains of viruses, bacteria, insects and other organisms. These organisms have evolved and are still evolving, with increasing resistance to present methods of control. Coevolution Discussions on changing life forms will sometimes bring up the term coevolution. Whenever there is some close symbiotic relationship between two organisms, a change in one could have a significant effect on the other. Such symbiotic relationships could include mutualism, commensalism, parasitism and mimicry. If there is dependence between two organisms, whether it is one way or both ways, a change in the physical structure or behaviour of one could remove the benefit for the other. Unless the “partner” is able to change also, it could mean its extinction or the extinction of both. A very good example of coevolution can centre on particular plants and their pollinators. Certain flower structures may require specific types of pollinators, whether they are insects, birds or other agents. A particular plant species may have evolved to the point where its flower structure may be pollinated by only one species of bird, which uses that one plant as its primary food source. Changes to one could mean that the other would have to change. Lamarck may have said that an “inner need” to change would bring about that modification. However, Biology 30 63 Lesson 15 mutations or recombinations are random. A species change in coevolution would only occur if there happen to be some variations in the population able to take advantage of the partner’s change. If there were such variations, those individuals would have the best chance of survival and reproducing more of their particular kind. Other examples of coevolution include plant-herbivore relationships. Certain herbivores’ eating habits have evolved with changes in particular plant species. Some herbivores can only survive now on one species of plant, and perhaps on just a certain part of that plant. Examples of Coevolution: Yucca moths and yucca plants Yucca flowers are a certain shape so only that tiny moth can pollinate them. The moths lay their eggs in the yucca flowers and the larvae (caterpillars) live in the developing ovary and eat yucca seeds. Photo by Stan Shebs Lichens Lichens are composed of a mixture of fungi and algae. In each “species” of lichen, the alga and fungus are so closely intertwined that whole lichens are classified as species, rather than the component fungus/alga. The type of fungus and alga are species-specific. The alga does photosynthesis and produces sugars for fuel for both. The fungus attaches the whole lichen to its substrate (tree, rock) and holds in water needed by the alga. Photo by Ross Agnus Snapdragon Coevolution is often seen in a number of species of flowering plants that coevolved with specific pollinators (insects, bats, etc). The pollinator gets a reward such as nectar for pollinating the plant. Moth-pollinated plants often have spurs or tubes the exact length of a certain moth’s “tongue.” For example, Charles Darwin predicted the existance of a moth in Madagascar based on the size and shape of a flower he saw there. The moth was actually discovered about 40 years later. The common snapdragons that many people plant in their gardens are designed for a bumblebee of just the right weight to trip the opening mechanism. Biology 30 64 Lesson 15 Primate Evolution An area of evolution that has probably experienced the most critical attention, has been that of the primate line. This includes human-like and human life forms. Many of the difficulties in attempting to establish phylogenetic trees or pathways that include humans have been due to lack of fossil evidence. Often, only fragments of skulls, jaws or other skeletal parts have been found. Recreating entire bodies from fragments has been difficult, leaving doubts as to their accuracy. Such doubts have extended into the task of trying to determine whether or not certain fossils belong to the same or different groups; also, as to the times when certain groups may have diverged from each other and in what orders. As time goes on, new study and reconstruction techniques should add many more items of information. Experts can now reconstruct remarkably accurate facial features from skulls or skull fragments alone. Continuing finds are also being made of primate fossils and these should assist in filling in gaps in the fossil records. Ancestors of the earliest primates may have resembled tree shrews or a type of squirrel. Some of the primate traits related to tree life may have developed from these initially tree-dwelling and insect-eating ancestors. These include features such as: mobile digits (fingers, toes) and sometimes opposable thumb; free arms and flexible hands; binocular vision (for depth perception); complex central nervous system, including a larger brain (for sensory interpretations); and, a sometimes complex, but flexible, social system. The primate line has so far been traced back about 65 to 66 million years. Shortly after it appeared, it seems to have split in two directions. One of these is referred to as prosimians, or “lower” primates. Lemurs, Lorises, and Tarsiers are representatives of these today. The other direction was that of the anthropoids or the human-like line. One of the branches of the anthropoid line included the hominids, of which apes and humans are part. Biology 30 65 Lesson 15 Scientists estimate that the human or hominid line diverged from the rest of the hominoid line between 4 and 9 million years ago. Increasing finds of human-like fossils dating between 2.5 and 3 million years are being made. To try and separate humans from the rest of the hominoids, researchers focused on what they considered to be uniquely human characteristics. These included: being bipedal, which is often determined by the manner in which bones come together at the knee and also the shape of the pelvis; having the foramen magnum (where the spinal cord enters the skull) at the bottom of the skull; having a fairly large brain cavity (at least over 400 cc); and, the shape of the jaw. One of the older hominid fossil remains is that of an individual (called “Lucy”) dated at between 3 and 3.5 million years. She was given the classification of Australopithecus afarensis. After Lucy, there may have been a divergence into two or three lines. Between 2 and 3 million years ago, it is believed that there may have been clusters of hominids, some perhaps living side by side. The major ones were the Australopithecus and the Homo lines. The more primitive Australopithecus line became an “evolutionary dead end”, while the Homo line led to the present humans. Separation between various groups in all lines is frequently based on brain size, as this generally shows the greatest evolutionary advancement through this vertebrate line. The following indicates relative sizes of various human groups, along with chimpanzees as a comparison: Chimpanzees – 280 – 400 cc Australopithecines – 400 – 550 cc Homo erectus – 775 – 1100 cc Homo sapiens – 1300 – 1400 cc The brain size, and especially the front part or cerebrum, gives an indication of the ability to receive and interpret sensations, to coordinate responses and to carry out thinking or reasoning skills. These abilities have an effect on the evolutionary success of particular organisms. The Homo line may have originated about 2.4 million years ago, as indicated by a recent find classified as Homo rudolfensis. The next find to fill the chronological order was that of Homo habilis (2 million years), which appears to have been the first tool-user. Homo erectus made its appearance about 1.5 million years ago. Approximately 500 000 years ago, the first lines of our own species appeared, with Homo sapiens neanderthalensis (which became another evolutionary dead end) and then Homo sapiens (Cro-Magnons). It is felt that a small number of individuals from this group gave rise to all of the present human race. Fossil evidence suggests that humans have not changed much anatomically in the past 200 000 years. Biology 30 66 Lesson 15 The second half of this lesson will examine some technologies and the human use of these, especially in relation to changing species or “creating” new ones. It will bring out issues and questions that are discussed and debated in the public forum. Many of these relate to how far humans should go in manipulating genetic identities of organisms, the procedures that should be followed, the reasons for doing so, and how the outcomes should be utilized. The opinions, viewpoints and convictions of individuals and groups will no doubt be as varied and as strongly voiced as those for origins of life and evolution. Biotechnology The term “technology” can have slightly different meanings. In general, it can be looked on as the body of knowledge associated with a particular science, along with the tools, skills or processes arising from it. Frequently, the idea of some practical use or achieving some benefit is tied in with the meaning. Biotechnology refers more specifically to the relationships humans have with technology: how they use it, the effects they cause with it, or how they are themselves affected by it. Some of the direct benefits to ourselves may be seen in what we sometimes do to our bodies, internally or externally. Individuals may have eyeglasses, artificial knee joints or hips, artificial heart valves or hearts and assortments of other devices or “gadgets”. Even the clothes that we wear, the foods that we eat or the vehicles that we ride in or on, are part of biotechnology, since these were also produced or achieved with the aid of technology. By extension, we can expand this to include the effects that our technologies have on environments, which would include both the non-living and the living. The level of technological development in a culture and its degree of use can have many effects. On the human population itself, it generally determines the well-being or “comfort levels” of the majority of its individual members. On surrounding environments the effects are far-ranging and numerous. Technology drives and frequently transforms the ways in which all natural resource industries are utilized – from farming to wildlife management. Many of the effects these utilizations have are related to species and gene pool changes. Biology 30 67 Lesson 15 Natural Selection-Artificial Selection Part of Darwin’s theory on evolution had to do with natural selection. That is, certain selection pressures in particular environments could have significant effects on organisms’ chances of survival. The selection pressures, or natural selection, would be directing the ways particular populations change. What really led Darwin to his observations and conclusions about natural selection came from his initial observations as to what was happening in agriculture. He noted that plant and animal breeders were directing developments or changes of their varieties or breeds. They were doing this by selecting the individuals that were to serve as breeding stock. In effect, the livestock or plant managers were themselves serving as selection pressures, by breeding only those individuals with “desirable” traits. Artificial selection is usually part of a process of genetic screening, which involves an analysis of organisms’ genotypes or genetic components (genomes). Originally, organisms’ genotypes were decided upon (not always accurately) by their phenotypes, or external appearances and behaviours. Plants or animals having traits or qualities liked by their owners would be selected for breeding. Such a practice meant that many genes in gene pools would not be utilized and their frequencies over generations would fall. A gene pool would keep getting smaller, unless special breeding programs concentrated on crosses between different varieties. Artificial selection or controlled breeding would “evolve” plants and animals that are genetically similar and uniform. Organisms could also be selected and developed for some prominent or distinctive traits. Early forms of artificial selection often took considerable periods of time and involved many generations of individuals. With plants, periods of dormancy for particular varieties added more time to the programs of trying to develop certain kinds of individuals. While periods of dormancy extend the time period, there are some techniques for speeding up the breeding programs. Artificial insemination and embryo transplants allow for rapid increases in animal numbers from parents that are considered to be genetically superior. For plant breeding, research stations scattered in widely separated locations in the northern and southern hemispheres have allowed some plants to be grown without interruptions due to dormancies. Chemicals and hormones have also been used to break dormancies and to speed up germination times. Culturing and cloning are increasing in use as means of producing large numbers of genetically uniform individuals, in shorter periods of time. As genetic pools shrink, plants and animals become more and more similar to other members of their species. There is a decrease in genetic diversity within pools, which results in fewer variations. Particular varieties or breeds of organisms could become very specialized for specific environmental conditions or environments. Anytime a high degree of specialization occurs or a gene pool shrinks, it makes a species susceptible to extinction. Biology 30 68 Lesson 15 Factors, such as a major disease or some type of climatic incident out of the ordinary for the species or the influences of humans invading more natural habitats, could wipe it out. Such consequences are possible whether species are artificially selected or are selected naturally, since there are many wild populations with limited numbers or small genetic pools (such as whooping cranes, cheetahs...). Various individuals and groups are campaigning to maintain sample populations of some older breeds or varieties of animals and plants. By doing so, they maintain, there will be genetic pools to draw from should some misfortunes occur to “newer” varieties. Another possibility for these old gene pools is that they could provide a source of genes which could still prove useful in present populations. A Whooping Crane Habitat Modifications and Their Effects Individuals find it difficult to locate larger expanses of land that do not show some signs of humans or human activities. Effects of acid rain, increased levels of radioactive fallout or other substances released by human activities could influence even uninhabited and supposedly undisturbed areas. Oceans have not escaped either, even though the effects are usually not as obvious. Demands for particular kinds of natural resources by humans have generally been accelerating, as population numbers have gone up or as new consumer demands have been made. These demands, in turn, have accelerated the rates at which natural environments or habitats have been modified or changed. Clearing of forests, cultivation of natural grasslands and the flooding of certain lands (for hydroelectric or irrigation projects) are just some of the activities associated with resource use. Altering habitats also alters evolution or the ways in which evolution could occur. In certain instances, habitat modification may simply change the rate of evolution. It could either delay or increase the speed at which species change. For instance, if an area had been becoming more desert-like and irrigation was introduced to some parts of it, that action could delay the development or introduction of species more suited to desert conditions. Introduction of industrial pollution to the English countryside accelerated the change in a species of peppered moth from a light to a dark colour. Biology 30 69 Lesson 15 In many situations, habitat modification by humans is unfortunately too rapid for species to experience variations which could increase survival chances. Species caught in these situations can either try to migrate or they will become extinct. Besides changing rates of evolution among species of plants and animals, habitat modifications have major effects in reducing population sizes and genetic diversities. Some scientists estimate tropical rainforests to contain about 50 000 species of trees. In addition, there could be up to 500 insect species associated with each variety of tree, not to mention birds and other organisms. Reduction of tropical rainforests can therefore have a great impact on reducing total numbers of species and gene pool diversities. Changing habitats can also establish barriers to movements of organisms. Clearcutting in different areas of one forest region could mean that movements of organisms can be limited, which reduces gene sharing. Constructing canals, pipelines or highways can do the same thing. Another form of habitat modification comes with growing human populations. This is the trend towards increasing urbanization. Urban and suburban developments are taking increasing amounts of land out of natural states or out of agricultural production. Creation of these artificial, paved-over ecosystems forces out or destroys many previously established species. A phenomenon sometimes associated with urbanization is cultural evolution that some animals go through. Cultural evolution is frequently a change in a behaviour or in a manner of living, which is often passed on to future generations. Some species, or some members of certain species, will not necessarily leave due to urban developments. Members of the human public may be surprised at the amount of wildlife that does exist within town or city limits. Rabbits, foxes, coyotes, skunks and raccoons are just some of the mammals which sometimes make urban developments their homes or parts of their territories. Many of these species go through forms of cultural evolution where they change their lifestyles. Raccoons learn to use attics or unused parts of buildings as shelters. Coyotes establish regular routes where they scavenge for garbage, feed from household pets’ dishes or prey on small pets. Peregrine falcons have learned to substitute ledges of buildings for rocky cliffsides as nesting areas. Occasionally, a cultural evolution could involve a physiological change due to a change in the manner of living. One example of this includes humans. Agriculture and the increasing use of dairy products or a milk diet has resulted in an increasing development of lactose tolerance. Certain cultures of people and many people in general don’t have a good digestive capacity for the milk of other species. However, with increasing consumption of cows’ milk as part of their diets, new generations of people have higher numbers of those who are able to properly digest cow’s milk. Biology 30 70 Lesson 15 Effects of Agriculture Agriculture could have been included in the last section. However, because it is the single human activity that has the greatest effect on habitats, it is deserving of its own section. The effects of agriculture on landscapes are probably best visible from an aerial view. Looking down on the prairies from a height, one would usually see an uninterrupted patchwork pattern of fields. Bodies of water or waterways often have control structures or some connections to surrounding lands. Before agriculture, humans were often just members of biotic communities. With the domestication of plants and livestock, environments began to be changed to better suit the needs of plant and animal management. In most instances, communities were “simplified”; native plants and native animals were removed to reduce competition for the domesticated varieties. Thus, the familiar pattern of a decrease in total numbers of species and reductions in gene pools is evident with this activity. A common aspect of western agriculture is that of monoculture. Entire fields or areas often support just one particular variety of plant or animal. As with natural populations, reduction in the numbers of species or in the gene pools sets up situations where entire populations could be at risk. A disease or an unusual weather pattern could destroy all the living organisms of one species in one area. Associated with a monoculture type of land use, are some of the related activities that go with it. Rapid and extensive cultivation techniques, along with heavy use of chemicals (herbicides and pesticides), also limit the number of different species and even the natural (biotic) controls common to areas. These techniques and products are generally harsh on the land as well, contributing to the problems of loss of organic matter in the soils, buildup of salinities and susceptibility to erosion. All of these can create different selection pressures on the plants and animals that have to deal with them. Some plant and animal “pests” subjected to certain chemicals or cultivation methods have begun to evolve in ways to make them more resistant. It is now common to have certain insects, plants and animals resistant to previously successful control methods used by humans. Continuous plant and animal breeding and selections for particular traits have also increased the dependence of domesticated varieties on humans. Certain varieties of plants or breeds of animals can only be raised now in very controlled conditions and under the care and supervision of humans. Most wheat varieties and other cereal grains could not survive without humans. The original wild wheat had heads which “shattered” when ripe. This allowed the light seeds to be scattered or blown away. When the first domestic variety was created without the shattering ability and heavier seeds, the plants could no longer scatter their seeds. This, and their requirement for loose soils, would put present cereals at a disadvantage and on a road to extinction, if left on their own. The same would apply if many breeds of birds or animals were left to fend for themselves on the prairies under natural conditions. Biology 30 71 Lesson 15 Economic-Social Issues and Their Implications Many human relationships with their environments are part of economic and social conditions. Almost everyone desires to be well off financially and have many of the comforts common to a society. Unfortunately, financial profits are often made at the expense of environments. These could involve extracting certain resources (forestry, mining...) or making use of certain resources (as farming does with soil and water...) in ways that put pressures on other species and humans themselves. Certain logging practices, forms of strip mining and other activities have the effects of changing landscapes or environments relatively quickly. Many previously established species have decreased in numbers, have been forced to move, or have simply disappeared. Profit-making often employs methods of resource extraction, usage or processing that contributes to pollution. Acid rain, oil spills, toxic wastes and contamination of soils and waters frequently result from the refusal of individuals and groups to invest more time or more money into their activities. For certain industries, the added costs of “cleaner” methods of production, or those that are more environmentally friendly, could mean the difference between profit and loss. Some industries, in some years, even lobby governments for reduced standards in emission or in production. Potential losses to governments of millions of tax dollars and all the spinoff effects of jobs make many of these lobbies successful. Depressed economies and job shortages even change the attitudes of many in the general public. Most people would sooner prefer to have jobs even if it means that some workplaces are kept going because of lower production standards. Political parties and various interest groups commonly set goals of eliminating poverty or food shortages within certain time intervals. Despite the good intentions, such goals are not often realized. At the same time, many fail to realize that attempts to raise income levels or food supplies require increased use of natural resources, increased food production and creation of more jobs. Each one of these activities uses up more natural resources and eliminates more natural habitats. Although this type of outlook may seem discouraging, one should realize that promises or certain programs don’t necessarily come without costs. Situations and conditions should be looked at from wider views, with greater awareness of all the implications. Biology 30 72 Lesson 15 Genetic Engineering: “Artificial” Evolution While habitat modification has been, and still is, a major human influence on other species, something else has been assuming prominence. Simple forms of artificial selection, such as choosing just which individuals breed or cross-pollinate, are now giving way to more advanced forms of genetic engineering. Rapid accumulations of new genetic information have been the basis for the increasing ability of humans to actually manipulate genetic components of individual organisms. Advanced techniques in genetic screening now allow scientists and researchers to “read” base sequences in DNA, or to actually identify individual genes. Processes or procedures are also being worked on to replace segments of chromosomes and even individual genes. Such techniques give humans even greater abilities to direct changes in plant and animal species. The ability to insert “made-to-order” DNA molecules, or “designer” genes, has been increasingly successful in producing transgenic individuals. These are plant or animal individuals which have genes from other species inserted into them. Dairy cattle, in one instance, have had the insertion of a human gene. The aim of this is to try and have the animals produce milk which is more easily digested by humans. Another research facility has worked with the insertion of human genes into pigs. By doing so, it hopes to develop animals which would produce or carry hormones or organs more compatible to humans. Should injections or transplants of these into humans be required, there would be less chance of rejection. Attempts are also being made to insert particular genes into wheat. By doing so, researchers are trying to develop varieties showing such traits as greater resistance to frost damage, greater resistance to certain herbicides or more salttolerance. Creating such “designer” grains or other species is another argument for trying to preserve “wild” gene pools. Genes of native or wild populations sometimes carry traits which could be useful in commercial varieties. Developing specifically designed plants or animals which are suitable for certain conditions, could have significant effects on certain economies. o In Saskatchewan, there could be possibilities of growing transgenic cereal grains, oilseeds or fruits, in areas where current species are unable to grow. Such possibilities may not only mean new species for particular areas, but could also result in differences in farming methods, storage and transportation techniques, environmental effects and many other changes. Genetic engineering and just how far it can be developed will be a focus of attention when changes or evolutions of species are considered. That humans now have the abilities to modify or change species is not in doubt. What will likely be increasingly asked is just what sorts of future changes will be seen in plants, animals and even in humans. What will be the long term effects of such “manipulated” changes on species? What will be the long term effects on ecosystems or on environments? Biology 30 73 Lesson 15 Summary Our own (human) role in evolution can be regarded in different ways. The Divine Concept has human creation as being the last to occur, on the sixth day. It also presents the idea of other forms of life as revolving around, and even being controlled by, humans. Another viewpoint is that human life could be compared to a particular period in the history of our planet, where a certain group of organisms was dominant. As with the age of reptiles, human existence and influence may eventually end up as just a tiny slice in one of the Earth’s geologic layers or strata. Once humans advanced to the point of using tools and especially after they began to domesticate plants and animals, modifications of habitats increased quickly. The general effect of most habitat modifications on life forms is to cause a decrease in the number of species and also a decrease in the diversity of gene pools. Regulating reproduction of various species of plants and animals, through artificial selection, brings about the same general effects. Such activities not only affect the ways in which particular organisms may evolve or change, but also place some at the risk of extinction. Since the l950s, science and the public have seen dramatic increases in information and technology levels. In biology, the amount of genetic information and the skills developed in working with genetic material has been opening up possibilities that would have been hard to imagine a short time ago. Scientists are now capable, through genetic screening and genetic engineering, of actually directing the way(s) species change. In other words, they can “design” life forms in particular manners. Although still having difficulties in certain attempts, future knowledge and innovations will likely keep expanding human control in the genetic area and in the evolving of species. With the increasing effectiveness of humans in controlling species changes, one may well wonder what the long term effects on changes will be. In many areas, such as agriculture, designed species may be very beneficial to environments, producers and consumers. At the same time, questions also arise as to the fate of many “natural” species and their gene pools. Related to this is another consideration related to the human species itself: that is, how much control will there be on human evolution itself? Biology 30 74 Lesson 15 Note: You will NOT have a calculation question on gene frequencies on the final examination. An example question is given in the following pages if you are interested in knowing more yourself. Practice Questions (for Hardy-Weinberg Law): Review In 1908, an American and a German researcher independently published their conclusions about frequencies of genes in gene pools. These became part of the Hardy-Weinberg Law. The Hardy-Weinberg Law states that the frequencies of the alleles for a given trait in a population remain the same (are stable) from generation to generation, under conditions of genetic equilibrium. (See numbers 1-5 below.) In addition, the Hardy-Weinberg Law established equations that could be used to predict allele and genotype frequencies in populations that were relatively stable at particular times. A population is in genetic equilibrium when the gene pool remains constant from one generation to the next. Conditions must be “ideal” for genetic equilibrium to occur. The ideal conditions would be as follows: 1. The population must be very large. 2. The mating must be random. 3. The population is isolated. There are no net movements of genes in or out of the pool. 4. No mutations occur. 5. There can be no selection advantages. (No natural selection occurs). There must be equal viability, fertility, and mating ability of genotypes. This means that all genotypes have equal reproductive success. NOTE: The following exercise is intended as a means of applying the equations in determining gene and genotype frequencies. Do the questions then check the answers that are given to see how you have done. Biology 30 75 Lesson 15 Question: Tobacco seedlings can germinate to produce leaves which are green (due to the presence of chlorophyll) or are albino (or yellowish or white in the absence of chlorophyll). G stands for the gene for green chlorophyll and g represents the albino gene. Tobacco plants with GG or Gg genotypes are green, while those with gg are albino. The following represent the genotypes of 200 young tobacco plants: GG GG Gg Gg GG Gg GG Gg GG Gg GG GG Gg GG Gg GG GG Gg GG GG 1. GG GG GG gg GG Gg GG GG gg GG Gg Gg GG Gg Gg Gg Gg Gg Gg GG gg gg GG GG Gg GG Gg GG GG Gg GG GG gg GG GG Gg GG GG GG GG Gg GG GG GG GG gg GG Gg Gg gg GG GG Gg Gg Gg GG Gg Gg Gg gg GG GG Gg Gg Gg Gg GG gg GG GG Gg GG GG Gg GG Gg GG GG Gg GG gg gg GG GG GG Gg Gg GG GG Gg GG gg Gg Gg Gg GG Gg gg GG gg GG GG Gg Gg Gg GG GG GG Gg GG Gg GG GG Gg GG Gg Gg Gg Gg Gg Gg GG GG GG GG Gg Gg GG GG Gg GG Gg Gg GG Gg gg Gg GG Gg Gg GG Gg GG GG Gg GG GG Gg GG GG GG Gg GG Gg GG GG GG Gg GG gg Gg GG Gg Gg Gg GG GG Gg Gg Gg Gg Gg Gg gg Gg Gg GG GG GG gg Determine the frequency of the genes in the population. Individually, count the numbers of G’s and g’s. a. Number of G’s: _______________ b. Number of g’s: _______________ c. Frequency of G. number of G’ s total number of genes (G’ s and g’ s ) (Leave your answer in decimal form.) Use the formula G Frequency of G: Biology 30 _______________ 76 Lesson 15 d. Frequency of g. g number of g’ s total number of genes Frequency of g: _______________ Correct calculations of frequencies of G and g will result in a sum of 1.0 (or 100 percent) when you add the two frequencies. The first Hardy-Weinberg equation is: p + q = 1.0 (or 100 percent) p = frequency of dominant gene (G) q = frequency of recessive gene (g) Do a check. Your value of p + your value of q = ________ + ________ = ________. This should equal 1. If not, go back and check your work, or call your teacher. 2. Now examine the frequencies of the various phenotypes. a. Frequency of albino plants albinos total number of plants (Leave your answer in decimal form.) Frequency of albino plants: 3. ____ b. Is this frequency greater or smaller than the frequency of the g gene? ____ c. Is the frequency of albino plants equal to 2q or q2 ? ____ Knowing that p + q = 1, and that q2 = the frequency of a recessive phenotype, you can determine gene frequencies in a population even if you don’t know all the genotypes, as were presented to you with the tobacco plants. Suppose there are 100 squirrels in a particular spruce grove area of Duck Mountain Provincial Park. Of these, 64 have a dominant phenotype of a longer tail. 36 have a recessive shorter tail. If L stands for the dominant long tail gene and l for the recessive short tail gene, then the genotypes for long tail could be LL or Ll, and short tail is ll. Biology 30 77 Lesson 15 Show all work for questions (a)-(f) below. a. What is q2, or the frequency of the recessive trait ll? b. What is the frequency of the dominant phenotype? c. What does q equal? d. What does p equal? (Recall that p + q = 1.) e. If q2 is the frequency of the recessive trait ll, then p2 is the frequency of the homozygous LL trait. What is the value of p2 ? (This is the frequency of the dominant LL trait.) f. Having calculated the frequencies of ll (q2) and LL (p2), the only remaining frequency to be calculated is that of the heterozygotes Ll. The second Hardy-Weinberg equation is: p2 + 2pq + q2 = 1 Therefore, the heterozygotes Ll are 2pq. Using this equation, what is the frequency of the heterozygotes? Summary Statement According to the Hardy-Weinberg law, the frequency for genes for a particular trait should remain fairly constant in a stable population (where there are no exceptionally prominent selective pressures or forces). This means that a gene, whether it is dominant or recessive can have a low frequency in a population and still remain present in that population over generations. It also emphasizes that recessive genes, in particular, will not disappear over time. Biology 30 78 Lesson 15 Practice Question Answer Sheet 1. This question is dealing with individual genes (so you can calculate the frequency of G and g in the population). a. Count the number of individual G’s = 280 b. Count the number of individual g’s = 120 c. G 280 0.7 400 d. g 120 0.3 400 Check: p+q=1 p = frequency of dominant gene q = frequency of recessive gene From (c) p = 0.7 From (d) q = 0.3 So 2. 0.7 + 0.3 1.0 = 1.0 = 1.0 Now you are dealing with the phenotypes. (To have a phenotype you are dealing with 2 alleles.) a. albinos 18 0.09 total number of plants 200 b. Compare answer from 2a to 1d. 0.09 is smaller c. 2q 2(0.3) 0.6 or q2 (0.3)2 0.09 The answer is q2. Biology 30 79 Lesson 15 3. Remember q2 = the frequency of a recessive phenotype. a. There are 36 squirrels out of 100 that show the recessive (ll) shorter tail. q2 b. 36 0.36 100 There are 64 squirrels out of 100 that show the dominant trait. Their genotypes are both LL and L1. 64 0.64 100 c. g q 2 0.36 0.6 d. p + q =1 Substitute 0.6 for q. p + 0.6 = 1 p = 1 – 0.6 p = 0.4 e. p2 = (0.4)2 f. 2pq 2(0.4)(0.6) = 0.16 or 16% of the 100 squirrels have LL genotype. = 0.48 or 48% of the 100 squirrels have L1 genotype or are heterozygous. Check: p2 + 2pq + q2 = 1 0.16 + 0.48 + 0.36 = 1 1 = 1 Biology 30 80 Lesson 15