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Restriction Enzymes • A Restriction Enzyme (or restriction endonuclease) is an enzyme that cuts double-stranded DNA at specific recognition nucleotide sequences known as restriction sites. Such enzymes, found in bacteria and archaea, are thought to have evolved to provide a defense mechanism against invading viruses 1 Restriction enzymes • Restriction enzymes cut double-strand DNA at specific recognition sequences which are often 4-6 base pair palindromes = 5’-3’ sequence is identical on both DNA strands • Many restriction enzymes cut the two DNA strands at different points which generates complementary single-strand ends = sticky ends (others = blunt ends) 2 Restriction Enzymes • host DNA is methylated by a modification enzyme (a methylase) to protect it from the restriction enzyme’s activity • Werner Arber discovered in 1962 enzyme HindII (Haemophilus influenzae) • the 1978 Nobel Prize for Physiology or Medicine was awarded to Daniel Nathans, Werner Arber, and Hamilton O. Smith 3 2) Phương pháp (tt): Digestion DNA 1. Cut DNA by restriction enzymes and add enzyme ligase biding the complement sequences G CTTAA any double strand TAA T EcoRI MseI GAATTC CTTAA G T TAA AAT T EcoRI MseI Any double strand 4 Restriction enzymes BamHI (from B. amyloliquefaciens ) recognizes GGATCC and cuts between the G’s on both strands 5 Restriction enzymes 6 Restriction enzymes Restriction enzymes cut DNA into defined pieces, named restriction fragments 7 Restriction enzymes DNA fragments of different size (e.g. restriction fragments) can be separated according to their size by gel electrophoresis: • agarose gel electrophoresis (100 bp - 15 kb) • polyacrylamide gel electrophoresis (1-500 b) =PAGE 8