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Biological Sciences Unit 3B Programme Ecosystems: biodiversity and sustainability Ecosystem resilience relies on maintaining biodiversity in order to be sustainable and productive. Conservation strategies are developed to address environmental challenges—natural or human induced. Conservation rationale for the effective conservation of biodiversity within natural ecosystems conservation projects and strategies for maintaining biodiversity and the prevention of extinction including: genetic strategies e.g. gene/seed banks, captive breeding programs, DNA profiling, development of new strains environmental strategies e.g. biological control, reafforestation, introduced species, pest control management strategies e.g. national parks, protected zones, licences, open seasons. Continuity of species DNA is a self-replicating and information-carrying molecule. The manipulation of DNA has lead to a range of applications of biotechnology, particularly in medicine, agriculture and conservation. Individuals within a species show variety in a range of characteristics. Change in a species, over time, is due to the selection of inheritable characteristics best suited to the environment. DNA replication of DNA protein synthesis. Recombinant DNA technology techniques restriction enzymes ligation gel electrophoresis polymerase chain reaction (PCR) processes gene cloning transgenic organisms DNA profiling. Applications of DNA technologies recombinant DNA technology and DNA identification technology in agriculture environmental conservation. Variation significance of meiosis sources of variation including mutations the independent assortment of chromosomes crossing over during meiosis random mating. Isolation barriers to gene flow. DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 1 Selection process of natural selection leading to change in characteristics of a population e.g. pesticide resistance, bird beaks, flowers and pollinators selective pressures leading to change or extinction e.g. loss of habitat, predation practical application of artificial selection e.g. the selective breeding of animals and crops. Speciation/evolution gene pools changes in allele frequency due to: natural selection sexual selection genetic drift e.g. the founder effect. Evidence for evolution evolutionary relationships between groups using physiological, molecular and evidence in phylogenetic trees evidence for evolution including: fossils homologous structures comparative anatomy embryology of vertebrates comparative biochemistry and genetics. Working as a biologist Planning and conducting biological research design an investigation for an hypothesis devise a safe investigation involving a number of controlled variables. Evaluating and communicating as a biologist analysis of current biological issues using scientifically informed sources environmental and ethical considerations associated with practices of biotechnology limitations of experimental design influence of biological research on decision-making and management of biological systems implications for careers and commercial applications of biological research. DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 2 Biological Sciences Unit 3B 2012 Programme Texts which are referred to in this schedule are: HQ Heinemann Queensland Science Project (Biology: A Contextual Approach) SAM Heinemann Queensland Science Project Student Activity Manual HQ eBiology Heinemann Queensland Science Project (Biology: A Contextual Approach) Teacher Resource and Assessment Disk Biozone Student Resource and Activity Manual Year 12 UFR User Friendly Resources – Exploring Biotechnology Book A and Book B UFR CC User Friendly Resources – Cracking the Code from DNA to Proteins Biotechnology Online http://www.biotechnologyonline.gov.au STAWA WoL Week 18 19 Year 11 Human Biology Lab manual Web of Life Student Manual Part 2 Major content Working as a biologist Evaluating and communicating as a biologist analysis of current biological issues using scientifically informed sources environmental and ethical considerations associated with practices of biotechnology DNA replication of DNA protein synthesis. Class activities Text reading/homework INTRODUCTION ACTIVITY To engage students in this unit and get them thinking about biotechnological process and conservation. Should we clone extinct species? For example the thylacine The references below can be used to obtain ideas for this activity HQ Student Manual 3.3 Tigers and devils p259-260 Biotechnology Online Resurrecting extinct species http://www.biotechnologyonline.gov.au DNA TECHNOLOGY DNA DNA replication DNA replication important in the production of new daughter cells (mitosis and meiosis). Biozone 12 p188-189 STAWA 34 DNA p132 DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 3 HQ - p463-464 HQ - Review questions 5-9 p464-465 Assessment Task 1 Extended response: Should we clone extinct species? Protein synthesis When a cell needs to make a protein mRNA is formed in the nucleus and moves into the cytoplasm (Transcription). The mRNA join on to ribosomes and codons on the mRNA are translated into amino acids. Amino acids are then joined to produce the required protein (Translation). SAM 3.2 Making master molecules Part A p255258 HQ eBiology – Protein synthesis Biozone 12 p198-200 STAWA 35 Protein synthesis p135 UFR CC p11-17 19-20 Recombinant DNA technology techniques restriction enzymes ligation gel electrophoresis polymerase chain reaction (PCR) HQ p473-480 HQ - Review questions 16-17 p474; 18-25 p481 Task 2 Practical skills investigation: DNA profiling of Humpback Whales RECOMBINANT DNA TECHNOLOGY Recombinant DNA techniques Once genes for particular traits have been identified, the DNA can be isolated from genes (using restriction enzymes), many copies can be made (PCR) and the DNA can be incorporated into the DNA of another organism (ligation). For example the isolation and cloning of the insulin gene. DNA samples can also be used for DNA profiling using gel electrophoresis. PCR is used to produce many copies of the DNA sample and restriction enzymes are used to cut the DNA into pieces. Restriction enzymes Enzymes that cut DNA molecules at particular sites. These enzymes are used to manipulate individual genes from a variety of organisms. Restriction enzymes have been isolated from bacteria and are named after the bacterial species from which they originated. Biozone 12 p204-205 UFR Book A p10-13 Biology in Context – Advances in plant genetics UWA DNA splicing interactive http://www.biotechnologyonline.gov.au DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 HQ - p469-472 HQ - Review question 13-14 p472 4 Ligation The DNA fragments produced using restriction enzymes are reassembled using an enzyme called DNA ligase. The DNA produced when restriction enzymes are used to isolate fragments of DNA and DNA ligase is used to reassemble the DNA is called recombinant DNA. HQ p469-472 Biozone 12 p206 UFR Book A p20-24 Gel electrophoresis Used to separate molecules (nucleic acids or proteins) on the basis of size and electric charge. HQ p467-468 Biozone 12 p207 Biotech in a box activity or demonstration UFR Book A p15-17 Biology in Context – Advances in plant genetics UWA Polymerase chain reaction In order to conduct processes such as DNA sequencing and profiling large amounts of DNA are required. PCR is used to produce vast quantities of DNA to enable these processed to occur even if only a small DNA sample is available. Biozone 12 p208-209 SAM 3.1 As easy as PCR p251-252 UFR Book A p26-31 21-23 processes gene cloning transgenic organisms DNA profiling. recombinant DNA technology and DNA identification technology in agriculture HQ - Review question 11 p472 HQ - p465-469 HQ - Review question 10, 12 p472 APPLICATIONS OF DNA TECHNOLOGIES Transgenic organisms A transgenic organism is one whose genome has been altered by adding genes from a different species into its genome using recombinant DNA technology. Biozone 12 p216-223 UFR Book B p54-58 In agriculture Bt gene which codes for insecticide resistance DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 HQ - p539-540 HQ - Review question 43 p540 5 Task 3 Extended response: GM Bananas environmental conservation. e.g. Bt cotton http://www.biotechnologyonline.gov.au herbicide resistance e.g. canola http://www.biotechnologyonline.gov.au In environmental conservation Biological control of pests e.g. carp, mice http://www.biotechnologyonline.gov.au Gene cloning Uses DNA technologies to making large quantities of a desired piece of DNA once it has been isolated. e.g. the production of insulin Biozone 12 p214-215 DNA profiling Biozone 12 p210-211, p212-213 DNA profiling interactive http://www.biotechnologyonline.gov.au In agriculture DNA profiling can be used in agriculture to determine The parentage of animals and plants for breeding, The origins of animals and plants to determine correct labeling of products e.g. grapes from different wine regions The source of animals or plants in food products e.g. substitution of fish/meat products In environmental conservation Scientists use DNA typing to measure the amount of genetic variation between different populations of a species, determine the geographic distributions of species, help preserve endangered or threatened species, determine the genetic resilience of wild populations of endangered species e.g. cheetahs are at risk of extinction largely because there is virtually no genetic variation in the species DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 6 HQ - p469-470 HQ - Review question 15 p472 DNA fingerprinting has also been used to monitor illegal trade in protected species. e.g. Wildlife forensics http://wwwstaff.murdoch.edu.au 24-26 significance of meiosis sources of variation including mutations the independent assortment of chromosomes crossing over during meiosis random mating. NATURAL SELECTION AND EVOLUTION HQ – p571-573; 351-353; 481-482; 523-524 HQ - Review question 1-3 p573; 1516 p353; 26-27 p483; 29 p528 Each population carries its own particular combination of genetic material that comes about due to the shuffling of chromosomes during gamete formation and mating. Some of these combinations are well suited to their environment, others are not. This section will look at evolution through natural selection that result in new variations in a species or the evolution of a new species. Biozone 12 p329 Variation Variation exists between members of the same species; some of these variations are inherited. Variation can occur during sexual reproduction due to the rearrangement and shuffling of the genetic material into new combinations through Independent assortment of chromosomes and crossing over during meiosis, and Random selection of mates Variation can also result from mutations which provide new genetic information. barriers to gene flow. Meiosis HQ eBiology – meiosis Biozone 12 p192-193, p260, p274-275 WoL 14a.4 and 146.9 Mutations Biozone 12 p244-245, p247-249, p251 Isolation Barriers to gene flow prevent interbreeding between groups of organisms of the same species resulting in reproductive isolations. These barriers can be Geographical/environmental DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 HQ - p591-592 HQ - Review questions 23-24 p592 7 Task 4 Test 1: DNA Technology Task 5 Practical skills investigation: Natural selection simulation process of natural selection leading to change in characteristics of a population e.g. pesticide resistance, bird beaks, flowers and pollinators selective pressures leading to change or extinction e.g. loss of habitat, predation practical application of artificial selection e.g. the selective breeding of animals and crops. Ecological Behavioural Structural Biozone 12 p332-333 Selection Natural selection is the process in which organisms best adapted to their environment survive and pass on the beneficial characteristics to their offspring. Over time the frequency of the favourable phenotypes will increase in the population. Competition, predation, climatic factors, and disease are examples of selection pressures that cause the changes in phenotypes. Natural selection Biozone 12 p302-305 Artificial selection Biozone 12 p312-3.5 Farm note “genetics for sheep breeding” HQ - p574-576; 593-595 HQ - Review questions 4-9 p576; 2527 p595 http://www.agric.wa.gov.au 27 gene pools changes in allele frequency due to: natural selection sexual selection genetic drift e.g. the founder effect. Speciation/Evolution Over many generations the allele frequencies in a gene pool can change. Such changes can lead the changing population evolving into a separate species. Changes in allele frequencies can occur due to: Natural selection Biozone 12 p296-301 Genetic drift Biozone 12 p309, p311 Speciation Biozone 12 p334-337 HQ - p587-590 HQ - Review questions 21-22 p592 evolutionary relationships between groups using physiological, molecular and evidence in phylogenetic trees evidence for evolution including: fossils homologous structures comparative anatomy embryology of EVIDENCE FOR EVOLUTION HQ – p545-562 HQ - Review questions 1-8 p550; 915 p557; 16-18 p562 The theory of evolution is supported by large amounts of scientific evidence. Biozone 12 p312-3.5 Fossils Biozone 12 p318-319 WoL 15a.1 Comparative anatomy/Homologous structures Biozone 12 p325 Biozone 12 p326 DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 8 28-30 vertebrates comparative biochemistry and genetics. rationale for the effective conservation of biodiversity within natural ecosystems conservation projects and strategies for maintaining biodiversity and the prevention of extinction including: genetic strategies e.g. gene/seed banks, captive breeding programs, DNA profiling, development of new strains environmental strategies e.g. biological control, reafforestation, introduced species, pest control management strategies e.g. national parks, protected zones, licences, open seasons. Embryology Biozone 12 p322 Comparative biochemistry and genetics Biozone 12 p320-321 CONSERVATION BIOLOGY HQ - p116-118; p132-133 HQ - Review questions 1-4 p118; 35 p135 Biodiversity is the variety of life: the different plants, animals and micro-organisms, their genes and the ecosystems of which they are a part. Australia is one of the most diverse countries on the planet. It is home to more than one million species of plants and animals, many of which are found nowhere else in the world. Task 7 Extended response: A case study in conservation biology Australia is facing its greatest ecological challenge to prevent a complete collapse of its ecosystems. The loss of biodiversity has reached critical proportions with depletion of our forests, wetlands and rivers – the natural habitats for our animals or birds and fish. Pose the question: “Why do we need to conserve biodiversity within natural ecosystems?” In groups students brainstorm ideas. These ideas can be displayed and a gallery walk can be organised to share ideas. Genetic strategies Students’ research each of the strategies to give an example of they are being used in conserving and maintaining biodiversity and preventing extinction. Could be done as a Jigsaw or similar information sharing strategy. Some examples are provided under each heading 1. DNA banks Australian frozen zoo http://www.australianfrozenzoo.com The Frozen Ark http://www.frozenark.org 2. Seed Banks HQ p134-135 HQ - p134 -135 Millennium seed bank project DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 Task 6 Test 2: Natural Selection and Evolution 9 http://www.kew.org Conservation seed science at Kings Park http://www.bgpa.wa.gov.au/science 3. Captive breeding Western Australia examples of captive breeding programs http://www.dec.wa.gov.au http://www.perthzoo.wa.gov.au HQ - p134 HQ - Review questions 36-37 p135 4. DNA Profiling DNA profiling can be used to determine the genetic diversity of small populations. e.g. Quokka http://wwwstaff.murdoch.edu.au the forensic and wildlife identification e.g. Black cockatoos http://wwwstaff.murdoch.edu.au to determine genetic diversity in native plant species for conservation management and restoration e.g. Kings Park http://www.bgpa.wa.gov.au/science Environmental strategies Controlling introduced species Feral animals and plants are so successful because they can out-breed, out-eat and out-compete Australian natives, as well as having few natural predators. Introduced animal pests include rabbits, foxes, cats, mice and cane toads. Examples of plant pests include Patterson's curse, lantana and the prickly pear. Of these feral invaders, many have outstayed their welcome by causing massive damage to the Australian environment. Students investigate an example of a biological control that is being used to control introduced species helping to conserve and maintain biodiversity of native species and prevent extinction. DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 10 HQ - p119-121; 122-125 HQ - Review Questions 5-9 p122; 10-13 p123; 14-18 p125 Managing weeds http://www.weeds.gov.au managing feral animals http://www.invasiveanimals.com Management strategies Western Shield program Western Shield is the DEC's leading nature conservation program and is working to bring at least 13 native animal species back from the brink of extinction by controlling introduced predators — the European fox and feral cat. Launched in 1996, it is now the biggest wildlife conservation program ever undertaken in Australia. Students investigate how the Western Shield program is helping to conserve and maintain biodiversity and prevent extinction. Deadly Protects DVD produced by DEC http://www.dec.wa.gov.au/programs DETSS | Biological Sciences Unit 3B programme © Department of Education and Training, Western Australia, 2009 11