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i Abstract Brain derived neurotrophic factor (BDNF) plays an important role in activity dependent processes of the central nervous system like in synaptic transmission and plasticity. The effect of BDNF on synaptic transmission seems to be region specific and also differs according to pre- and post-synaptic cell types. In this study we further characterized the influence of chronically reduced levels of BDNF on synaptic transmission in the mammalian visual cortex. We used 21-25 days old mice, which partially lack the BDNF coding gene (BDNF +/-), while matched wild type littermates (wt) served as controls. By using whole-cell patch clamp recordings we studied possible presynaptic and postsynaptic alterations for both, the excitatory and inhibitory transmission. Our data revealed that the excitatory synaptic transmission was impaired in the visual cortex of BDNF (+/-) mice. The effect was mainly due to a decreased release of presynaptic glutamate. In contrast, the functional properties of AMPAR and NMDAR mediated currents were not different indicating a preservation of the postsynaptic properties of the glutamatergic neurotransmission. For the inhibitory system, the release probability and frequency of mIPSCs were decreased in BDNF (+/-) mice, whereas the number of release sites was not different. Also the amplitude of evoked and spontaneous inhibitory currents was reduced, and the decay constants were prolonged in BDNF (+/-) mice. In this case alterations were more profound and suggested both pre- and post-synaptic roles of BDNF. These findings suggest that chronically reduced BDNF depressed both the excitatory and inhibitory synaptic transmission in the visual cortex, but via different cellular mechanisms, and the effect appears more prominent on the inhibitory system.