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Request for Proposal (RFP) No. NTRY8R15 Issued by the WATER ENVIRONMENT RESEARCH FOUNDATION (WERF) Proposals must be received by 4:00 pm United States Eastern Time Tuesday, January 27, 2015 Plasmids and Rare Earth Elements from Wastewater WERF contact person: Christine Radke, PMP Phone: (571) 384-2106, Email: [email protected] PROJECT BACKGROUND, RATIONALE, AND OBJECTIVES The Water Environment Research Foundation (WERF) is currently funding research on the recovery of macro-Nutrients (NTRY1R12), Energy, and Water, as well as a variety of creative new commodities. This request for proposals (RFP) will build upon the prior and ongoing body of research by focusing specifically on Plasmids and Rare Earth Elements as additional and important value-added commodities that could be produced by Water Resource Recovery Facilities (WRRFs) and effectively marketed and/or used locally or in a broader geographic area. Plasmids Municipal wastewater contains plasmids which are small DNA molecules that are physically separate from, and can replicate independently of, chromosomal DNA within bacteria. In nature, plasmids carry genes that may benefit survival of the organism (e.g., antibiotic resistance), and can frequently be transmitted from one bacterium to another (even of another species) via horizontal gene transfer. The genetic flexibility of bacteria has contributed to their survival in altered environments, because of their capacity to acquire and transfer resistant genes. While research is currently underway to better understand the impact of antibiotic resistant bacteria, this project will focus on the recovery of these molecules as another potential wastewater resource. A plasmid is an extrachromosomal, circular piece of DNA that usually has very specific and useful properties. Plasmids naturally exist as supercoiled molecules and are most commonly found as small circular, double-stranded DNA molecules in bacteria. Plasmids are considered replicons, capable of replicating autonomously within a suitable host. Plasmids can be found in all three major domains: Archaea, Bacteria, and Eukarya. Plasmids used in genetic engineering are called vectors. Plasmids serve as important tools in genetics and biotechnology labs, where they are commonly used to multiply (make many copies of) or express particular genes. There are many plasmids which are commercially available for such uses. Another major use of plasmids is to make large amounts of proteins. In this case, researchers grow bacteria containing a plasmid harboring the gene of interest. Just as the bacterium produces proteins to confer its antibiotic resistance, it can also be induced to produce large amounts of proteins from the inserted gene. This is a cheap and easy way of mass-producing a gene or the protein it then codes for, for example, insulin or even antibiotics. In one market segment of plasmids, increasing applications of nucleic acid based-tests in molecular diagnostics are expected to drive the demand of nucleic acid purification products market in the coming few years. The global nucleic acid isolation and purification market over the forecast period of 2013 to 2018 is valued at an estimated $2,103.39 million in 2013. Rare Earth Elements Many of today’s technologies, from hybrid car batteries to flat-screen televisions, rely on rare earth elements (REEs) that are in short supply. A rare earth element or rare earth metal is one of a set of 17 chemical elements in the periodic table, specifically the 15 lanthanides – lanthanum, cerium, praseodymium, neodymium, promethium, samarium, europium, gadolinium, terbium, dysprosium, holmium, erbium, thulium, ytterbium, and lutetium (atomic numbers 57–71) plus scandium and yttrium. Scandium and yttrium are considered rare earth elements because they tend to occur in the same ore deposits as the lanthanides and exhibit similar chemical properties. Rare earth elements (with the exception of the radioactive promethium) are relatively plentiful in the Earth’s crust, with cerium being the 25th most abundant element at 68 parts per million (similar to copper). However, because of their geochemical properties, rare earth elements are typically dispersed and not often found concentrated as rare earth minerals in economically exploitable ore deposits. The Asia-Pacific region captures maximum share in rare earth consumption due to rapidly increasing demand in China which accounts for approximately 60% of the global consumption. China is the single dominant supplier of the rare earth elements. Due to increasing export restrictions by China and growing internal demand, there may be a cause of concern for the supply of rare earth elements across the globe. There are also concerns about the mining of rare earth elements in conflict-ravaged and/or unstable nations in Africa. This has caused the market price and availability of rare earth elements to be highly speculative. Demand for magnetic materials is going at a rate of 9.8% per year. Scientists are now specifically trying to establish a method to recycle rare earth elements from wastewater. The estimated 2013 distribution of rare earths by end use was as follows, in decreasing order: catalysts, 65%; metallurgical applications and alloys, 19%; permanent magnets, 9%; glass polishing, 6%; and other, 1%. The leading end uses of yttrium are in phosphors, ceramics, and metallurgy. Yttrium is used in phosphor compounds for flat panel televisions and displays, and in fluorescent lights. Yttrium compounds are used in ceramic applications including abrasives, bearings and seals, high-temperature refractories for continuous-casting nozzles, jet-engine coatings, oxygen sensors in automobile engines, and wear-resistant and corrosion-resistant cutting tools. In metallurgical applications, yttrium is used as a grain refining additive and as a deoxidizer. Yttrium was used in heating-element alloys, high-temperature superconductors, and superalloys. In electronics, yttrium-iron garnets were components in microwave radar to control high-frequency signals. Yttrium is an important component in yttrium-aluminum-garnet laser crystals used in dental and medical surgical procedures, digital communications, distance and temperature sensing, industrial cutting and welding, nonlinear optics, photochemistry, and photoluminescence. PROJECT GOALS A significant data gap exists on the occurrence, market, and recovery potential of these commodities (plasmids and rare earth elements) from water resource recovery facilities. The work proposed should build upon existing experience and ongoing research globally. The primary goal of this project is to conduct a feasibility study on the recovery of these commodities and help define the standards and specifications needed for WRRFs to produce and market high quality plasmids and rare earth elements, both for the generator (the WRRF) and the end user (recognizing that this can vary for specific markets and regions of the country). For example, it is recognized that recovery of plasmids and rare earth elements from wastewater is not highly developed. Data gaps exist in occurrence in water resource recovery facility influent streams and concentrated streams such as reverse osmosis reject. Based on the analytical results, the market value can be quantified and normalized. Product quality specifications and parameters can be used to determine unit processes necessary to derive marketable products. Guidance is needed for New or Emerging uses/markets. For New or Emerging markets/uses, the guidance developed should include the occurrence, desired quality and technology needed. The guidance should also indicate whether existing criteria and standards can meet the product use standards, and if not, describe what is needed. SCOPE OF THE PROJECT This RFP is purposely not prescriptive to encourage innovation and creativity; thereby enabling proposers to demonstrate their understanding of the need for this project and their approach to address this need. However, the research plan should be designed such that the “desirable outcomes” listed in the next section are accomplished. This will enable WRRFs to determine areas of research that can lead to longer term resource recovery opportunities. Proposers are expected to successfully achieve the primary goal above (i.e., conduct a detailed feasibility study on the recovery of these commodities and help define the standards and specifications needed for WRRFs to produce and market high quality plasmids and rare earth elements, both for the generator and the end user) and should address the key elements outlined below in their proposal: 1) Project Significance (to demonstrate understanding of need for project) o Statement of Importance: Concisely state why the proposed work is of importance and relevant to the mission of WERF and the greater water quality community. o State-of-Knowledge Supporting the Research: Describe the current state-of-knowledge regarding current criteria for various end uses of plasmids and rare earth elements; as well as the scientific and technological advances in the subject. Make a strong and compelling case for the originality and innovation of the proposed work. o Science/Technology Outcomes Potential: Describe how the proposed work will advance our understanding in this area and how it could lead to a transformation in how WERF subscribers perform their business. 2) Project Approach (to demonstrate creative solutions / approach to address the need) An appropriate research approach is expected to provide: o Description of the specific objectives that will be addressed by the proposed work. o Details of the experimental design and procedures to be used to achieve all stated objectives in a scientifically defensible manner. o Details of any new and enabling tools/methods/techniques (and/or cost benefit evaluation and metrices) that may be developed to help the generator and end user of the product(s). o Details of how progress will be measured and successfully accomplished as the project progresses. Desirable Outcomes Rare Earth Elements (REE) • Quantification by literature or laboratory analysis (if information is available) of the contribution of REE in wastewater due to human excretion and/or catchment’s industrial activities ((such as discharge of REE contaminated trade waste) including speciated concentration and mass rates, • Based on first principles, establish whether REE would adsorb to residuals or sludges (and biosolids) or to the effluent. • Based on the above, design conceptual processes to recover REEs as concentrated solutions. • Estimate the potential economic value of the REEs recovered. Plasmids • Based on literature information or analytical results, estimate typical plasmids concentration and mass rates by type or class in both effluents and biosolids • Design conceptual processes that can be used to both concentrate and purify plasmids from various matrixes (liquid streams, sludges and biosolids) • Estimate the commercial value of plasmid concentrates of different purities. ANTICIPATED DELIVERABLES AND MILESTONES The proposal should include a detailed scope of work, budget, as well as a list of deliverables and milestones to track, communicate, and measure progress for this research. Deliverables include, but is not limited to, written progress reports, conference calls / seminars / meetings, and a workshop. Draft and final reports that can be published and distributed by WERF are among the required deliverables. The Final Report (and / or other deliverables) submitted at the conclusion of the research should satisfactorily address technical peer review comments. This research anticipates the following deliverables submitted to WERF in a timely manner: o Progress reports describing technical progress and implications for the industry o Draft final report o Final Report (at conclusion of research) o Workshop or seminar presentations and / or proceedings that can be used to transfer significant findings to end users including sponsors of the research. Additional information and guidance on communications deliverables are available online. Progress reports and deliverables should be provided to WERF based on the schedule that is proposed in the scope of work. WERF will distribute these to a technical peer review committee (the Issue Area Team) for review and input. The selected contractor is expected to be available for teleconferences and / or online discussions with the steering committee during the course of the research, and for one or more workshops / seminars. SELECTION PROCESS AND CRITERIA Selection of proposals is a very competitive process. Proposals will be reviewed by WERF and the Issue Area Team (IAT) for the Resource Recovery challenge. This external review team may be complemented as needed by subject matter experts. As part of the evaluation process, WERF reserves the right to request interviews, either via conference call or in person, with qualified proposers if necessary. Proposers are encouraged to develop and submit their intended research plan that meets the research goals of this RFP, provides sufficient details of their budget, as well as schedules and milestones that can successfully deliver on the stated research goals, objectives, and tasks that are proposed. WERF will evaluate proposals on the following components: • Research team whose member’s education, knowledge, and experience directly relates to the project scope. (30%) • A clear, focused, and creative research approach that demonstrates the ability to achieve the research objective(s). (30%) • A competitive, realistic budget that includes leveraging opportunities (external funds, partnerships, collaborations, in-kind contributions, etc.). (20%) • A detailed communications plan specifying outreach products (workshops, webinars, articles, etc.) and the intention to work in coordination with WERF. (10%) • A proposed schedule that moves the project forward as quickly as practical to achieve the objective(s) with decision points for consultation with WERF. (10%) PERIOD OF PERFORMANCE: Anticipated to be no more than 12 months from notice to proceed (NTP). NTP planned to be issued to selected proposer after Board approval in April 2015, with an anticipated project start date of May 1, 2015. FUNDING AVAILABLE: The total WERF cost / budget for the research effort is anticipated to be about US $50,000. Proposers are strongly encouraged to seek additional partners, collaborators, test sites, case studies, etc., to further leverage the level of effort and funding, as well as to successfully complete the research. Additional in-cash and in-kind contributions, for example, through technology providers, water resource recovery facilities, personnel, laboratories, etc., are also encouraged. The due date for this RFP has been extended to provide additional time for potential teaming and partnership arrangements, collaboration opportunities, and to obtain inkind or in-cash contributions. Proposers should note that the California Association of Sanitation Agencies (CASA) has issued a letter in support of this RFP and will collaborate with WERF to provide additional in-kind contributions to the selected proposer. The budgeted amount (including in-kind / in-cash contributions) is expected to cover the entire scope of work of the research team. INSTRUCTIONS: Proposers must follow WERF solicited RFP instructions for submitting proposal applications. Instructions for preparing a proposal are on the WERF website. Additional guidance on the communications plan may also be accessed online. Proposals are due in WERF’s offices by 4:00 p.m., U.S. Eastern Standard Time on Tuesday, January 27, 2015. Proposals received after the due date will be returned to the sender. As part of the evaluation process, WERF reserves the right to request interviews, either via conference call or in person, with qualified proposers if necessary. REFERENCES Behme, Stefan, (2009). Manufacturing of Pharmaceutical Proteins: From Technology to Economy, ISBN: 3527324445, ISBN-13: 9783527324446, Edition: 1, Wiley-Blackwell, February 2009, 404 p. 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(http://www.google.com.ar/patents/US6350577#npl-citations) Prazeresa, Duarte M.F., et al (), Large-scale production of pharmaceutical-grade plasmid DNA for gene therapy: problems and bottlenecks, Trends in Biotechnology, DOI: 10.1016/S01677799(98)01291-8, Volume 17, Issue 4, 1 April 1999, Pages 169-174. (http://www.sciencedirect.com/science/article/pii/S0167779998012918) Rehm, Prof. Dr. H.-J., et al (2008), Chapter 20. Issues of Large-Scale Plasmid DNA Manufacturing, DOI: 10.1002/9783527620999.ch20d, Published Online: 7 MAY 2008. (http://onlinelibrary.wiley.com/doi/10.1002/9783527620999.ch20d/summary) Soda, Satoshi (2009), Biotechnology for Recovery of Rare Metals in Wastewater, Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University. JUNBA 2009. January 13, 2009. (http://www.junba.org/docs/junba2009/techfair/B3-1OsakaUnivandShibaura.pdf) Urthaler, J., (2005). Industrial Scale cGMP Purification of Pharmaceutical Grade PlasmidDNA, Chemical & Engineering Technology, DOI: 10.1002/ceat.200500126, Article first published online: 7 NOV 2005. (http://onlinelibrary.wiley.com/doi/10.1002/ceat.200500126/abstract) Vladimir Sentchilo, et al (2013), Community-wide plasmid gene mobilization and selection, The ISME Journal (2013) 7, 1173-1186; doi:10.1038/ismej.2013.13; published online 14 February 2013. (http://www.nature.com/ismej/journal/v7/n6/full/ismej201313a.html) Yamashita, Mitsuo (2009). Rare-metal Bioremediation and Recycling using Biotechnology, Applied Chemistry, College of Engineering, Shibaura Institute of Technology, JUNBA 2009. January 13, 2009. (http://www.junba.org/docs/junba2009/techfair/B-31OsakaUnivandShibaura.pdf)