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Root Structure and Function The following papers resulted from a symposium held at the XVII International Botanical Congress, Vienna, Austria, July 2005 Organized by T. L. ROST (University of California, Davis) A. J. BLOOM (University of California, Davis) Annals of Botany 97: 837–838, 2006 doi:10.1093/aob/mcl042, available online at www.aob.oxfordjournals.org Root Structure and Function PREFACE This highlight section of the Annals of Botany contains a collection of articles that focus on the structure and function of roots of flowering plants. Most of the papers presented are based on talks given at a symposium on root structure and function at the XVII International Botanical Congress, Vienna, Austria, July 2005. Many of the articles, briefly capsulated below, examine the interactions between plants and the rhizosphere—the below-ground environment that immediately surrounds the root. The rhizosphere is far more complex physically, chemically and biologically than the above-ground environment of the shoot because (1) rapid, long-distance movement of energy or matter is limited through the mix of solid, liquid and gas phases below ground, (2) extreme changes in chemical composition occur below ground during the course of minutes and in the space of millimeters, and (3) the density as well as the diversity of organisms is orders of magnitude greater below ground. Plant roots serve as the major conduit of energy to the rhizosphere and of nutrients and water from the rhizosphere; therefore, plant roots dominate the dynamic habitat below ground. The articles presented here literally begin to scratch the surface and explore the depths of our understanding of roots. What follows are brief statements about the contents of each paper, the first four discuss root–soil interactions and mineral nutrition, and the last four deal with aspects of root structure–function related to hormonal and developmental regulation of root processes, lateral root initiation and root cap function. The article by Watt et al. highlights the paucity of reliable data on root–organism interactions in the field. The authors present an analysis that sets forth an appropriate perspective for observing root and rhizosphere processes in the field. It may help define the probability of different rhizosphere processes on roots in different soil conditions. In seedlings grown on a slope, Scippa et al. have found that changes in root system morphology, pulling strength and chemical lignin content were related to seedling age. cDNA–AFLP analysis revealed that the expression of several genes in root systems varied with slope. BLAST analysis showed that some differentially expressed genes are homologues to genes induced by environmental stresses in other plant species, and/or are involved in the production of strengthening materials. Bloom et al. show that in a nutrient solution, root elongation of a maize seedling—even one with ample nitrogen reserves—depended most strongly on exogenous inorganic nitrogen, and less so, if at all, on either the pH of the bulk nutrient solution or the mechanical properties of cell walls. The presence of ammonium or nitrate in the medium stimulated elongation by 29 % or 14 %, respectively. Acidifying the root medium from pH 65 to 56 nearly doubled the elasticity of the seminal root, but slightly decreased its elongation. Addition of an osmoticum to the medium had no effect on root elongation in the absence of inorganic nitrogen, but diminished the stimulation of elongation in the presence of ammonium and nitrate. This indicates that these ions or their by-products serve partially as osmolytes. The paper by Walch-Liu et al. reviews the different ways in which the N supply can modify root branching, summarizing the current understanding of the mechanism of nitrate stimulation of lateral root growth and the role of the ANR1 gene. In addition, the authors discuss the possible role of auxin in regulating the systemic inhibition of early lateral root development by high rates of nitrate supply. Finally, they examine recent evidence that an amino acid, L-glutamate, can act as an external signal to elicit complex changes in root growth and development. It is clear that plants have evolved sophisticated pathways for sensing and responding to changes in different components of the external N supply as well as their own internal N status. Cytokinin (CK) synthesized in the root cap promotes cytokinesis, vascular cambium sensitivity, vascular differentiation and root apical dominance. Auxin (indole-3-acetic acid, IAA) produced in young shoot organs promotes root development, induces vascular differentiation while auxin, together with CK, regulates root gravitropism. The article by Aloni et al. analyses the hormonal mechanisms that induce the root’s primary vascular system, explains how differentiating protoxylem vessels promote lateral root initiation, proposes the concept of CK-dependent root apical dominance, and visualizes the CK and IAA regulation of root gravitropism. Histological examination by Gladish et al. showed that some cells in the elongation zone of the primary root tips of pea have morphological abnormalities including misshapen and fragmented nuclei and cytoplasmic shrinking and fragmentation. TEM revealed lobing, invagination and chromatin aggregation in nuclei. The affected cells were found to be positive for chromatin fragmentation, indicating that apoptosis-like programmed cell death is involved in these processes. Programmed root tip death may rapidly reduce oxygen demand and sink strength allowing more rapid diversion of resources to lateral roots growing in more permissive conditions. Dubrovsky et al. show that in Arabidopsis thaliana lateral root primordia (LRP) initiation occurs strictly acropetally: de novo initiation events being absent between already developed lateral roots (LR) or LRPs. Thus, there is a narrow developmental window for LR initiation. No specific cell-count or distance-measuring mechanisms have been found that determine the site of successive initiation events. Nevertheless, the branching density and lateral organ density (the density of LRs and LRPs) are accession-specific, and the average distance between successive LRs can be predicted based on the lateral density. Ó The Author 2006. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: [email protected] 838 Rost and Bloom — Root Structure and Function Hamamoto et al. report, for the first time, a correlation between root apical meristem (RAM) organization type and the production and release of root cap border cells. Root cap border cells are released into the rhizosphere where they survive for a period and interact with beneficial micro-organisms in the soil. This interaction could provide a favourable benefit to the plant. Species exhibiting open RAM organization produced significantly more border cells than species exhibiting closed apical organization. In conclusion, this diverse collection of papers should dispel the image of roots as simple structures quietly sipping nutrients and water from a relatively static medium. Roots themselves rapidly change shape in response to environmental cues, and these changes dramatically alter both their abiotic and biotic environment. The authors, through their constant digging, have begun to expose the under side of plants that for so long was out of sight and out of mind. Bloom AJ, Frensch J, Taylor AR. 2006. Influence of inorganic nitrogen and pH on the elongation of maize seminal roots. Annals of Botany 97: 867–873. Dubrovsky JG, Gambetta GA, Hernández-Barrera A, Shishkova S, Gonzaléz I. 2006. Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density, and predictability. Annals of Botany 97: 903–915. Gladish DK, Xu J, Niki T. 2006. Apoptosis-like programmed cell death occurs in procambium and ground meristem of pea (Pisum sativum) root tips exposed to sudden flooding. Annals of Botany 97: 895–902. Hamamoto L, Hawes MC, Rost TL. 2006. The production and release of living root cap border cells is a function of root apical meristem type in dicotyledonous angiosperm plants. Annals of Botany 97: 917–923. Scippa GS, Di Michele M, Di Iorio A, Costa A, Lasserre B, Chiatante D. 2006. The response of Spartium junceum roots to slope: anchorage and gene factors. Annals of Botany 97: 857–866. Walch-Liu P, Ivanov II, Filleur S, Gan Y, Remans T, Forde BG. 2006. Nitrogen regulation of root branching. Annals of Botany 97: 875–881. Watt M, Silk WK, Passioura JB. 2006. Rates of root and organism growth, soil conditions, and temporal and spatial development of the rhizosphere. Annals of Botany 97: 839–855. LITERATURE CITED Aloni R, Aloni E, Langhans M, Ullrich CI. 2006. Role of cytokinin and auxin in shaping root architecture: regulating vascular differentiation, lateral root initiation, root apical dominance and root gravitropism. Annals of Botany 97: 883–893. T. L. Rost and A. J. Bloom E-mail [email protected]