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Biology Final Review Radioactive decay – Measures the breakdown of Carbon 14 or other radioactive material in an organism – Carbon 14 breaks down into nitrogen -Half life of Carbon 14 is 5730 years – if u had 12 grams and now its 6 then that sample is 5730 yrs old – 3 grams = 11460 yrs old Half–life – amount of time it takes for half of the radioactive material to decay (radioactive dating) Homologous Development – Parts that are descended form a common structure – Comparative Anatomy – Evidence form anatomy -Example of structures that share a common origin are the limbs of birds, animals and humans – all common to forearm – Similarities in functions do not indicate common ancestry - Example – Wing of a bird and wing of a butterfly Fossil record – Fossil is the trace of an organism preserved or petrified -Trapped in resin, sediment, make impressions or prints/tracks -Found in sedimentary rock – falls in water and sediment is put on top -Calcium that’s in the organisms bone or shell is slowly replaced by hard minerals Primitive Atmosphere – No free oxygen, CH4 (Methane), NH3 (Ammonia), Hydrogen, H2O – proposed by Russian biochemist Alexander Oparin -4.6 million years ago – lightning, volcanic eruptions, meteorites, UV light, high surface temp. -Oxygen was in metal oxides or water – not gas yet Comparative Embryology – Studying of developing organisms. The more similar development is the close the relationship is. Comparative Biochemistry – The closer the DNA sequences – closer species -Similar proteins in species are compared for their sequence of amino acids Protein cytochrome c in -Human/Chimp – all 104 match -Human/Dog – 91 match -Human/Rattlesnake – 84 match -Structure of hemoglobin is closer in humans and chimps – 99% DNA match (80% w/ all other animals) Natural Selection – Darwin – In nature there is a tendency towards overproduction of offspring – individuals with variations to the environment which are favorable live longer and produce more offspring with the suitable variation passed on to most of those offspring -A population will change as it becomes more adapted to its environment Nucleotides - The subunits of nucleic acids; composed of a phosphate, a sugar, and a nitrogencontaining base. The fundamental structural unit of the nucleic acid group of organic macromolecules. Some nucleotides are involved in information storage (as nucleotides in DNA), protein synthesis (as nucleotides in RNA), and energy transfers (as single nucleotide ATP, GTP, and double nucleotide NADH and NADPH). Amino Acids - The subunits (monomers) from which proteins (polymers) are assembled. Each amino acid consists of an amino functional group, and a carboxyl acid group, and differs from other amino acids by the composition of an R group. Lipids - One of the four classes of organic macromolecules. Lipids function in the long-term storage of biochemical energy, insulation, structure and control. Examples of lipids include the fats, waxes, oils and steroids (e.g. testosterone, cholesterol). -The chemicals found in life are – proteins, lipids, carbs., nucleic acid RNA – 1st genetic molecule -RNA and DNA work together to produce enzymes (chains of amino acids) and enzymes to allow for replication of DNA and RNA -Short sequences of RNA can from spontaneously -Can act like an enzyme -Can make own complimentary copies Antibiotics - Substances produced by some microorganisms, plants, and vertebrates that kill or inhibit the growth of bacteria. Divergent Evolution - The divergence of a single interbreeding population or species into two or more descendant species Convergent Evolution - The development of similar structures in distantly related organisms as a result of adapting to similar environments and/or strategies of life. Example: wings of birds and insects, the body shape of dolphins, sharks, and the extinct marine reptiles known as ichthyosaurs. Adaptive radiation – when a species comes to a new area and spreads out over different climates/areas and they evolutionary diverge and become different do to the different environments – finches - all came from one but because of the different food/ locations/ climates of the islands they started to evolve separately and different from one another to meet the habitats Punctuated Equilibrium - A model that holds that the evolutionary process is characterized by long periods with little or no change interspersed with short periods of rapid speciation. Gradualism – Gradual evolution over time Structural Adaptation – internal or external anatomic adaptation by an organism that promotes its fitness in its environment; ex: the long, narrow tongue of woodpeckers, is helpful in obtaining food Prokaryote - Type of cell that lacks a membrane-bound nucleus and has no membrane organelles; a bacterium. Prokaryotes are more primitive than eukaryotes. Cells lacking membrane-bound organelles and having a single circular chromosome, and ribosomes surrounded by a cell membrane. Prokaryotes were the first forms of life on earth, evolving over 3.5 billion years ago. Eukaryote - A type of cell found in many organisms including single-celled protists and multicellular fungi, plants, and animals; characterized by a membrane-bounded nucleus and other membraneous organelles; an organism composed of such cells. The first eukaryotes are encountered in rocks approximately 1.2-1.5 billion years old. PICTURE Symbiotic Hypothesis – Prokaryotes formed eukaryotes – proof is double layering of golgi bodies and the mitochondria Vestigal Structures – Structures in an animal that are no longer needed but were needed earlier in evolution – Example – Pigs – little toe things hang off foot Industrial Melanism – Pollution from the industrial revolution maid the moth darker in color to blend in with the darker trees because of their color change Bottleneck Effect - Drastic short-term reductions in population size caused by natural disasters, disease, or predators; can lead to random changes in the populations Founder’s Effect - The difference in gene pools between an original population and a new population founded by one or a few individuals randomly separated from the original population, as when an island population is founded by one or a few individuals; often accentuates genetic drift. Genotype – The genetic (allelic) makeup of an organism with regard to an observed trait. Phenotype – The observed properties or outward appearance of a trait. The physical expression of the alleles possessed by an organism. Binomial Nomenclature – Each species of plant and animal receives a two-term name; the first term is the genus, and the second is the species. Kingdom – Five broad taxonomic categories (Monera, Protista, Plantae, Fungi, Animalia) into which organisms are grouped, based on common characteristics. Phylum – The broadest taxonomic category within kingdoms Class – Sub category of phylum Order – Sub category of class Family – Sub category of order Genus – Sub category of family Species – Sub category of species – most specific Taxonomy – Science of classification of living organisms that creates a hierarchy based on their similarities and differences Cnidarian(Phylum) – Ex. – Jellyfish, Hydra, Coral - Radial Symmetry -Hollow body with one opening – mouth - Incomplete digestive tract -Polyp is essentially a flipped medusa - First group with tissues -Outer tissue is ectoderm - Stinging cells – cnidocytes on end of tentacles -Inner Tissue is endoderm Arthropod – Bilateral symm. –Complete digestive tract Most species – 1,000,000 - Segmented bodies - More specialization with particular functions can be carried out internal fertilization - Have air tubes covering made of chitin – for protection - Reproduce with - All appendages are jointed - Hard outer - Shedding of exoskeleton is called molting – Free from water because the sperm doesn’t need to swim to the egg Classes – Arachnida – cephalothorax & abdomen -no gills – 4 pairs of legs on cephalothorax -Insecta – Segmented into a head, thorax, and abdomen -one pair antennae -3 pairs of legs on the thorax -0, 1, or 2 pairs of wings –Trachea for breathing -Chylopoda – centipedes -Many Segments and one head -2 antennae -2 pairs of legs per segment -Diplopoda - Millipedes – same as centipede except 2 pairs of legs per segment -Crustacea – Crayfish, lobster, shrimp, daphnia – cephalothorax and abdomen -2 pairs of antennae -More than 4 pairs of legs -Gills for respiration Annelida – Segmented worms: Earthworms and leeches - Bilateral symmetry - Complete Digestive system - Coelom – cavity lies completely within the mesoderm - Mesoderm and endoderm interact to form different organs They need a circulatory system because their gut is surrounded by solid tissue which prevents rapid diffusion - Segmented bodies allow for diversification – segmentation is also internal – some organs are repeated for each section (nephridia) -Segmentation can also be found in arthropoda and chordata - -Gas exchange through the skin – primitive brain and ventral nerve chord -Muscle system is in two layers – Outer, circular muscles and inner, longitudinal muscles -Hermaphrodites while some species has separate sexes Echinoderm – Starfish - Radial symm. as an adult and bilateral as a developing embryo - Complete dig tract - No head or brain - Ventral mouth, dorsal anus - Water vascular system – series of H20 filled tubes and tube feet – don’t need an excretory system - Nerve ring around mouth that radiates to other parts of the body from the ring - Sexually reproduce – external fertilization -Regeneration – piece breaks off and they can grow back like they were Speciation – process by which new species are formed - The evolutionary formation of new biological species, usually by the division of a single species into two or more genetically distinct ones Coevolution – The evolution of two or more interdependent species, each adapting to changes in the other. It occurs, for example, between predators and prey and between insects and the flowers that they pollinate. Asymmetry – no symmetry Radial Symmetry – wheel like; body parts radiate from central hub Bilateral Symmetry – mirror like halves when cutting lengthwise along the midline Spherical Symmetry – sphere-like; body parts radiate from a central point Moneran Kingdom – All are bacteria and prokaryotes. Only method of reproducing is by binary fission. Has no organized nucleus. DNA is a circular strand of a chromosome Protista Kingdom – Either multi or unicellular. They are Eukaryotic and contains a nucleus. Can be autotrophic or heterotrophic. Plant –Algae, Animal – Protozoan, Fungus – slime molds Plant Kingdom – Cell walls of cellulose, Alternation of Generation (plant spends part of life cycle with on e set of chromo. and another part with 2 sets of chromo. Nonvascular plants – Mosses, liverworts (lives in moist environment). Vascular plants without seeds – still need moist environ. for reproduction. Seed plants – Gymnosperms Fungi Kingdom – most are multi-cellular, terrestrial, found on dead organic matter. Body made up of hyphae. Has mycelium (mat of filaments), cell walls made of chitin Animal Kingdom – All are heterotrophic, so ingest food then ingest inside their body. All are multi-cellular, have no cell walls. Autotroph – organism that makes it own food through chemosynthesis or photosynthesis Heterotroph – organism that need complex organic molecules for energy and must feed on other organisms. Definition of Species – Group of organisms that ca interbreed, produce offspring that are fertile, they cannot breed with another group, has a unique gene pool. Vertebrata – organism that has a backbone part of endoskeleton, made up of cartilage or bone that provides protection for the spinal cord. Allows growth Porifera – sponges (sessile) Chordata – has Notochord, dorsal nerve cord, gill slits once in their lifetime Notochord – dorsal cartilaginous rod which gives support. Firm yet flexible Dorsal nerve cord – group of nerves forming a hollow tube Anterior – front end of animals with bilateral symmetry Posterior – back end of animals with bilateral sym Dorsal – top or back of an animal with bilateral sym Ventral – bottom or front of an animal with bilateral sym Tracheal tubes – Some arthropods with branching tube ending in tiny air sacs: for vertebrates the tube conducts air to the lungs Segmentation – allows different parts of the body to perform a specific job/function rather then the one body part doing everything Hermaphrodism – an organism with both male and female reproductive organs Endoskeleton – internal framework or support system Virus – small and simple that has a core of DNA or RNA, genes that contain protein coat and enzymes to take over host cell. Protects genetic material so it can invade a cell Cellulose – plant walls Gram Positive Bacteria – Bacteria that has a inner cell wall made up of polysaccharides that pick up the color purple when stained Gram Negative bacteria – Other bacteria that have a second cell wall(capsule) of polysaccharides bound with lipids that appears pink when stained. Harder to treat these bacteria b/c has 2 cell walls to penetrate Cocci Bacteria – circular shaped bacteria (coccus) Spirillum Bacteria – spiral-shaped bacteria (spirochete) Binary Fission – method by which prokaryotes/bacteria reproduce where their DNA is replicated and distributes equally to the daughter cells. Omnivore – organism that eats both plants and animals Herbivore – plant eating animals Carnivore – meat eater/consumer Conjugation – sexual process in some organisms such as fungi in which genetic material is transferred from one cell to another by cell to cell contact Budding – asexual reproduction in which a new organism is produced by means of an outgrowth that breaks apart from the parent Lichens – an organism which is a symbiotic relationship b/w fungus and algae. Fungus provides a home + moisture to the algae and the algae provides food for the fungus Sporulation – Chlorophtyta – green algae that first invaded land Sporangium – reproductive structure for plants that produce spores Chlorophyll – green substance in producers that traps light energy from the sun, which is then used to combine carbon dioxide and water into sugars in the process of photosynthesis Plasmodium vivax –slime mold – unicellular blob w/ thousands of nuclei formed when food and water are scarce – growth w/o division Amoeba proteus – This very large polypodial amoeba usually lives in very clear and welloxygenated water. It feeds on other protozoan, algae, rotifers and even other smaller amoeba. The animal is continually throwing out pseudopodia in all directions with one pseudopodium becoming dominant for a short while. Paramecium Caudatum – ciliate, has oral groove for feeding, oval shape, lives in freshwater Trypanosome – parasitic flagellate class of protozoans; disease caused is sleeping sickness. Ploem- food transporting tissue in vascular system in plants Slime Mold – mold, grows on decaying vegetation Water Mold – parasitic or saprobic, lives in fresh water, moist soil, Phylum Oomycota Black Bread Mold – zygomycetes – zygote fungi – sexual and asexual repro. Mushroom – Basidiomycota, fleshy fungi Agar – gelatinous material, from marine algae Puffballs – fungi, balloon shaped, when popped releases spores Basidiomycota – fungi bearing spores, Puffballs, smuts, rusts, mushrooms, toadstools, rack fungi Sporozoa – all parasitic protozoans, malaria Diatom – single cell, microscopic, colonial algae Euglenophyta – free swimming flagellate, algae Rhizopoda – class of Protozoa, have pseudopodia, radiolaria, amoeba Jointed Appendages – have body parts with joints, Arthropods Complete Digestive System – two way system, found in all animals more complex than Annelida Bryophyta – mosses, liverworts Sporophyte – spore producing life cycle of plants Zygotes – cell formed by fertilized egg Antheridium – sperm producing organ, found in seedless plants, fungi, algae Rhizome – horizontal underground stem, roots grow out from its nodes Endosperm – same as the cotyledon, food source for developing plant embryo in seed Chlamydomonas – algae, found in fresh water and damp soil, flagellate Xylem – transports water in vascular system of plant Bacillus – rod shaped bacteria, occur in chains Protozoan – group of single celled, eukaryotic organisms, amoeba, ciliates, flagellates, sporozoan Algae – mainly aquatic, eukaryotic, photosynthetic organisms, single cell to Giant Kelp Ringworm – Infection of skin due to a parasitic worm Pseudopodia – found in amoeba, functions for movement and feeding by engulfing the food Ascomycota – yeast, sac fungi, morels, truffles, reproduction with ascus, contains ascospores Deuteromycota – Phylum, Fungi Imperfecti, asexual reproduction Euglena – simple, autotrophic protista Flagellate – having a whip like tail Ciliaphora – class in Protozoa, have cilia Dinoflagellata – fluorescent protozoa Incomplete Digestive System – one way system, can not eat continuously, found in Sponges, Cnidarians, and flatworms. Rhodophyta – eukaryotic algae, mostly marine Gametophyte – gamete producing phase in plants Spore – small, reproductive body, produced by bacteria, fungi, algae, non-flowering plants Rhizoids – root like structures found in non-vascular plants, mosses, liverworts, fern gametophytes Archegonium – egg producing organ, found mosses, ferns, gymnosperms Seed Coat – coat around outside of seed to protect it Pollen Grain – microspore, male gametophyte in seed plants Embryo – a living organism’s early stage of development Fertilization – process of fusion of two haploid sex cells (egg and sperm) to form a zygote Stigma – in a flower, the rough or sticky structure found at the tip of the style Style – the neck of a flower’s ovary Anther – the pollen-bearing part of a stamen in flowering plants Polar Nuclei – two nuclei in the center of the ovule of a flower’s pistil (female) Radicle – 1st part of the embryo to emerge form the seed; becomes the primary root fo the plant Epicotyl – in plants, a structure that forms a pair of small leaves that will open early in development Cleavage – process of rapid cell division that splits the zygote into many smaller cells to form a multi-cellular blastula (the overall structure does not change in size) Differentiation – developmental process by which generalized cells become specialized in order to form such structures as the brain and spinal cord Gastrulation – the entire process of cell movement and the formation of a triple-layered embryo Blastocoel – hollow cavity in the interior of a blastula Gastrula – a cup-shaped form of the developing embryo; contains ectoderm, endoderm, and mesoderm Ectoderm – outermost tissue layer of an organism Placenta – tissue formed for exchanging of gases, nutrients, and wastes between the mother and embryo Neural Plate – folds and fuses to form a hollow tube, the neural tube; develops into the brain and spinal cord in the early vertebrae embryo Vegetative Reproduction – asexual reproduction in plants that produces new plants form leaves, roots, or stems Cambium – lateral meristem in plants. Types include: vascular, cork, and intercalary Bark – outer layer of the stems of woody plants; composed of an outer layer of dead cells (cork) and an inner layer of phloem PICTURE Transpiration – in plants, the loss of water through pores in stomata Apical meristem – meristem (embryonic tissue) at the tip of a shoot or root that is responsible for increasing the plant's length Companion cells – Specialized cells in the phloem that load sugars into the sieve elements and help maintain a functional plasma membrane in the sieve elements. PICTURE 1 PICTURE 2 Ovary – structure in a flower’s pistil in which the female gametes are produced. In sexually reproducing animals, the structure that produces eggs Pollen Tube – Structure produced by the tube nucleus in the pollen grain through which the sperm nucleus (or nuclei in angiosperms) proceeds to travel through to reach the egg. PICTURE Pistil – a flower’s female reproductive organ; produces female gamete Filament – Slender, thread-like stalks that make up the stamens of a flower; topped by the anthers. PICTURE Micropyle – The end of the embryo sac where the egg cell and synergids are located Tube Nucleus – One of the cells in the male gametophyte in seed plants. The tube nucleus grows through the stigma, style, and into the ovule, clearing the way for the sperm nuclei to enter the embryo sac. PICTURE Hypocotyl – stalk like part of the embryo that will eventually become the upper part of the primary root and the lower part of the stem Cotyledon – A leaf-like structure that is present in the seeds of flowering plants; appears during seed germination and sometimes is referred to as a seed leaf. PICTURE Morphogenesis – development of the species-specific form or structures of the organism Embryology – The branch of biology that deals with the formation, early growth, and development of living organisms. Morula – The solid-ball stage of the pre-implantation embryo. PICTURE Blastula – A ball of cells surrounding a fluid-filled cavity (the blastocoel) that is produced by the repeated cleavage of a zygote. PICTURE Endoderm – The inner layer of cells in embryonic development that gives rise to organs and tissues associated with digestion and respiration. Also, the inner tissue layer in flatworms. Mesoderm – The middle layer of cells in embryonic development; gives rise to muscles, bones, and structures associated with reproduction. The middle embryonic tissue layer. Cells and structures arising from the mesoderm include the bone, blood, muscle, skin, and reproductive organs. Fragmentation – asexual reproduction in which whole, new adults are formed from fragments of the original organism. Archenteron – The central cavity of the gastrula, which ultimately becomes the intestinal or digestive cavity. Parthenogenesis – A form of reproduction in which an unfertilized egg develops into a new individual, occurring commonly among insects and certain other arthropods (drones and the queen bee) Cortex – 1) The outer part of an organ, e.g., the adrenal cortex, which produces several steroid hormones; 2) in plants, the region of the stem or root between the epidermis and the vascular bundle(s). PICTURE Mersimatic Tissue – Embryonic tissue located at the tips of stems and roots and occasionally along their entire length; can divide to produce new cells; one of the four main tissue systems in plants. PICTURE Translocation-Cohesion Theory – Describes the properties of water that help move it through a plant. Cohesion is the ability of water molecules to stick together (held by hydrogen bonds), forming a column of water extending from the roots to the leaves; adhesion is the ability of water molecules to stick to the cellulose in plant cell walls, counteracting the force of gravity and helping to lift the column of water. Sieve Tube – Phloem celled long tube. See sieve elements. Endodermis – A layer of cells surrounding the vascular cylinder of plants. PICTURE Auxin – plant hormone with growth – regulating effects, including the growth of stems toward light Endothermic – animal that maintains a constant body temperature through internal metabollic activity regardless of external conditions Saprophyte – organism that feeds on decaying organic matter, they recycle nutrients and prevent decaying matter from enveloping earth Lytic cycle of a virus – reproductive process in which a virus takes over all metabollic activities of a cell, replicates itself many times, and destroys the host cell Development – series of changes an organism undergoes in reaching its final adult form, one of four functions that determines an organism as a living creature Gibberellin – plant hormone that promotes growth and development Root Hairs – tiny fine out growths of the epidermal cells of plants, provide large surface area for absorbing water and dissolving ions Guard Cells – specialized cells in plants that surround each stoma, regulating its size and preventing the plant from dying out Lysogenic cycle of a virus – occurs when a cell containing a provirus repreduces, the host cell lyses and new virsues are released to become part of the chromosomes of other cells