Virus induced gene silencing, a post transcriptional gene silencing
... one of these tools to suppress expression level of the gene of interest in plants [3; 4]. The term VIGS was first coined by A. van Kammen to describe the resistance event against viral infection [5]. Since plants infected by many viruses induce RNA mediated defense which targets viral RNAs and any t ...
... one of these tools to suppress expression level of the gene of interest in plants [3; 4]. The term VIGS was first coined by A. van Kammen to describe the resistance event against viral infection [5]. Since plants infected by many viruses induce RNA mediated defense which targets viral RNAs and any t ...
Abstract - Plant Sulfur Network
... -comments to Fig1 and its legend: (1) what is in italics – presumably genes names but explain that there are genes names in the legend, (2)“cB” should be probably “cysB” etc., (3) show where is SAH lyase if possible –this would help to explain Fig. 4., (4) replace “—“ with “2-“ -comments to Fig.4 an ...
... -comments to Fig1 and its legend: (1) what is in italics – presumably genes names but explain that there are genes names in the legend, (2)“cB” should be probably “cysB” etc., (3) show where is SAH lyase if possible –this would help to explain Fig. 4., (4) replace “—“ with “2-“ -comments to Fig.4 an ...
Myotonic dystrophy DM
... -Yet the theories as to how large repeat arrays can cause such highly variable diseases are unresolved. ...
... -Yet the theories as to how large repeat arrays can cause such highly variable diseases are unresolved. ...
Type-2 fuzzy Approach for Disease-Associated Gene Identification on Microarrays Yan-Fei Wang
... limitations. The t-test is very sensitive to extreme values and cannot distinguish two sets with close means even though the two sets are significantly different form each other. Although the rank sum test overcomes the limitation of the t-test in sensitivity to extreme values, it is not sensitive t ...
... limitations. The t-test is very sensitive to extreme values and cannot distinguish two sets with close means even though the two sets are significantly different form each other. Although the rank sum test overcomes the limitation of the t-test in sensitivity to extreme values, it is not sensitive t ...
Marker-based inferences about fecundity genes contributing
... number of QTLs detected for each trait (except for RT) varied between the two F2s (Table 2). For WT, for example, four QTLs were detected in F,, and one in F,,. These results imply that, as expected, a large number of fecundity genes are involved in the expression of inbreeding depression. However, ...
... number of QTLs detected for each trait (except for RT) varied between the two F2s (Table 2). For WT, for example, four QTLs were detected in F,, and one in F,,. These results imply that, as expected, a large number of fecundity genes are involved in the expression of inbreeding depression. However, ...
Genomic organization of lignin peroxidase genes of Phanerochaete
... The cosmid and CHEF analyses described here clearly demonstrate clustering of LiP genes at both kilobase and megabase levels. The clustering of LiP genes is consistent with the RFLP finding that large variations in LiP activity among haploid recombinants do not correlate with the distribution of LiP ...
... The cosmid and CHEF analyses described here clearly demonstrate clustering of LiP genes at both kilobase and megabase levels. The clustering of LiP genes is consistent with the RFLP finding that large variations in LiP activity among haploid recombinants do not correlate with the distribution of LiP ...
SBT-production - Webarchiv ETHZ / Webarchive ETH
... Enzymes for reactions not active in the wild-type strain are not expressed, and gene deletion is thus not required. Mixtures of different carbohydrates are not tested in silico as they may be not consumed simultaneously in vivo. 1. Flux balance analysis (FBA) max (growth rate) s.t. metabolite ba ...
... Enzymes for reactions not active in the wild-type strain are not expressed, and gene deletion is thus not required. Mixtures of different carbohydrates are not tested in silico as they may be not consumed simultaneously in vivo. 1. Flux balance analysis (FBA) max (growth rate) s.t. metabolite ba ...
miRNA pptx - NUS School of Computing
... use the expression level of a known target genes for that specific intergenic miRNA If its target genes are consistently down-regulated, then we can assume that the expression level of the intergenic miRNA gene is up-regulated ...
... use the expression level of a known target genes for that specific intergenic miRNA If its target genes are consistently down-regulated, then we can assume that the expression level of the intergenic miRNA gene is up-regulated ...
Mouse Strain and Genetic Nomenclature
... always begin with an uppercase letter b. use American or British spelling c. be specific and brief d. include the word mouse True or False. Gene symbols should include tissue specificity or molecular weight designations. Give an example of a gene name and symbol. Provide an example of a genetic mark ...
... always begin with an uppercase letter b. use American or British spelling c. be specific and brief d. include the word mouse True or False. Gene symbols should include tissue specificity or molecular weight designations. Give an example of a gene name and symbol. Provide an example of a genetic mark ...
Interplay between copy number, dosage compensation and
... In contrast to work with single cell organisms, the impact of gene dosage on expression variability in metazoans is less well studied. However, a full understanding of the effect of gene copy deletions is fundamental for better understanding of diseases that originate from gene copy number changes. ...
... In contrast to work with single cell organisms, the impact of gene dosage on expression variability in metazoans is less well studied. However, a full understanding of the effect of gene copy deletions is fundamental for better understanding of diseases that originate from gene copy number changes. ...
Applied and Environmental Microbiology
... Nitrogenase activity was measured by acetylene reduction 21 days after inoculation. Student’s t test was performed to analyze the differences between nodule numbers in the different treatments. Bacteroid isolation. Nodules from 6 to 10 plants harvested 23 and 28 days after inoculation were crushed i ...
... Nitrogenase activity was measured by acetylene reduction 21 days after inoculation. Student’s t test was performed to analyze the differences between nodule numbers in the different treatments. Bacteroid isolation. Nodules from 6 to 10 plants harvested 23 and 28 days after inoculation were crushed i ...
The Effect of Chromosomal Position on the Expression of the
... of these values were close to wild-type levels; however, the total variation in specific activity among the lines was nearly fivefold. Thus position effects influence expression of the rosy gene quantitatively but do not detectably alter tissue specificity. Xlinked rosy insertions were expressed on ...
... of these values were close to wild-type levels; however, the total variation in specific activity among the lines was nearly fivefold. Thus position effects influence expression of the rosy gene quantitatively but do not detectably alter tissue specificity. Xlinked rosy insertions were expressed on ...
gene_expression
... At each step, a gene is selected at random The distance between the gene’s expression profile and each cluster’s weight vector is calculated, and the cluster with closest weight vector becomes the winner The winner’s and its neighbors’ (according to the 2D mapping) weight vectors are adjusted to rep ...
... At each step, a gene is selected at random The distance between the gene’s expression profile and each cluster’s weight vector is calculated, and the cluster with closest weight vector becomes the winner The winner’s and its neighbors’ (according to the 2D mapping) weight vectors are adjusted to rep ...
SEARCH_16S: A new algorithm for identifying 16S
... Of the 6,487 finished assemblies, 6,401 had feature tables provided by NCBI. SEARCH_16S and NCBI reported the same number of 16S genes (i.e., number of paralogs) in 5,724 (88%). A total of 26,816 genes were reported with 24,402 (91%) reported by both. A gene was considered to be reported by both met ...
... Of the 6,487 finished assemblies, 6,401 had feature tables provided by NCBI. SEARCH_16S and NCBI reported the same number of 16S genes (i.e., number of paralogs) in 5,724 (88%). A total of 26,816 genes were reported with 24,402 (91%) reported by both. A gene was considered to be reported by both met ...
1548 Tn Gene Is Borne by Composite Transposon Aminoglycoside
... The armA (aminoglycoside resistance methylase) gene, which confers resistance to 4,6-disubstituted deoxystreptamines and fortimicin, was initially found in Klebsiella pneumoniae BM4536 on IncL/M plasmid pIP1204 of ca. 90 kb which also encodes the extended-spectrum -lactamase CTX-M-3. Thirty-four en ...
... The armA (aminoglycoside resistance methylase) gene, which confers resistance to 4,6-disubstituted deoxystreptamines and fortimicin, was initially found in Klebsiella pneumoniae BM4536 on IncL/M plasmid pIP1204 of ca. 90 kb which also encodes the extended-spectrum -lactamase CTX-M-3. Thirty-four en ...
1995 Broad et al: CURRENT STATE OF THE NEW ZEALAND
... facial eczema, and nematodes. Facial eczema is a mycotoxicosis caused the hepatotoxin sporedesmin. Two lines of sheep have been selected at AgResearch Ruakura Research Centre, Hamilton, since 1975 (Morris et al. 1989) for either resistance or susceptibility to sporedesmin challenge (Towers and Strat ...
... facial eczema, and nematodes. Facial eczema is a mycotoxicosis caused the hepatotoxin sporedesmin. Two lines of sheep have been selected at AgResearch Ruakura Research Centre, Hamilton, since 1975 (Morris et al. 1989) for either resistance or susceptibility to sporedesmin challenge (Towers and Strat ...
Martina Šeruga Musić, Mladen Krajačić, Dijana Škorić
... presence of potential mutations is detected as a band shift or as a change in number of bands. Thus, conditions for the SSCP analysis have to be established empirically for each set of fragments. However, there are mutations still undetectable by the SSCP analysis. One of the most utilized protocols ...
... presence of potential mutations is detected as a band shift or as a change in number of bands. Thus, conditions for the SSCP analysis have to be established empirically for each set of fragments. However, there are mutations still undetectable by the SSCP analysis. One of the most utilized protocols ...
DNA sequence of the rat growth hormone gene: location of the 5
... the mature growth hormone mRNA. By SI nuclease mapping it was located approximately 25 bases "downstream" frcm a TATAAA sequence presumed to play a role in initiation of transcription of the rGH gene. ...
... the mature growth hormone mRNA. By SI nuclease mapping it was located approximately 25 bases "downstream" frcm a TATAAA sequence presumed to play a role in initiation of transcription of the rGH gene. ...
RNA-seq data analysis with Chipster
... • Biases introduced in library construction and sequencing • polyA capture and polyT priming can cause 3’ bias • random primers can cause sequence-specific bias • GC-rich and GC-poor regions can be under-sampled ...
... • Biases introduced in library construction and sequencing • polyA capture and polyT priming can cause 3’ bias • random primers can cause sequence-specific bias • GC-rich and GC-poor regions can be under-sampled ...
Supplementary Methods 1. Generation and post
... performed, this allows us to calculate accurate p-values to levels of precisions that could not be computationally achieved by direct permutation. b. Scoring for genes As described in the main text, we also defined a modified scoring and permutation procedure (Gene GISTIC) that scores genes rather t ...
... performed, this allows us to calculate accurate p-values to levels of precisions that could not be computationally achieved by direct permutation. b. Scoring for genes As described in the main text, we also defined a modified scoring and permutation procedure (Gene GISTIC) that scores genes rather t ...
NRT2 - Clark University
... Aspergillus nidulans are expressed under different concentrations of environmental nitrate, thereby giving the species environmental “plasticity”. Similarly, in Hebeloma, the sequence similarity between two paralogous copies is less than that between orthologous copies in any other two species. This ...
... Aspergillus nidulans are expressed under different concentrations of environmental nitrate, thereby giving the species environmental “plasticity”. Similarly, in Hebeloma, the sequence similarity between two paralogous copies is less than that between orthologous copies in any other two species. This ...
Document
... The map obtained by recombination frequency analysis does not place the gene loci at specific places on the chromosome; it simply allows us to determine the positions of genes relative to one another (linkage groups). The small cluster of three genes could in theory be anywhere on the actual chromos ...
... The map obtained by recombination frequency analysis does not place the gene loci at specific places on the chromosome; it simply allows us to determine the positions of genes relative to one another (linkage groups). The small cluster of three genes could in theory be anywhere on the actual chromos ...