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Grid-based Monte Carlo Applications
Grid-based Monte Carlo Applications

... – Use the random walk method to develop a program to ...
A study on the nickel(II)
A study on the nickel(II)

... famotidine, its model compounds and their structures with metal ions [7,8], we present the spectroscopic characterization of two solid state nickel(II)-fam complexes. Potentiometry, Raman and FT-IR were used to characterize complexes with octahedral (crystallized from solution at pH 6) and square-pl ...
Latex Allergy
Latex Allergy

... Big Deal! 1988- FDA required warning statement on latex products ...
Homology Modeling a Fast Tool for Drug Discovery
Homology Modeling a Fast Tool for Drug Discovery

... calculation of a force field and replaces it in large part, with the counting of sequence identities [7] . The method is based on the fact that structural conformation of a protein is more highly conserved than its amino acid sequence, and that small or medium changes in sequence normally result in ...
Reactions between dyes of the Alizarin Green series and vanadates
Reactions between dyes of the Alizarin Green series and vanadates

APenzymes
APenzymes

...  reactant which binds to enzyme  enzyme-substrate complex: temporary association ...
Proteins Act As Catalysts
Proteins Act As Catalysts

... Values of kcat/KM • kcat/KM can approach rate of encounter of two uncharged molecules in solution (108 to 109M-1s-1) • kcat/KM is also a measure of enzyme specificity for different substrates (specificity constant) • rate acceleration = kcat/kn ...
Chapter 14
Chapter 14

... mol/L, it takes __________ s for the concentration to decrease to 0.11 mol/L. A) 0.017 B) 0.68 C) 9.1 D) 40. E) 5.2 Chapter 15 Chemical Equilibrium 1) At equilibrium, __________. A) all chemical reactions have ceased B) the rates of the forward and reverse reactions are equal C) the rate constants o ...
HOMOLOGY MODELING OF ARYL HYDROCARBON RECEPTOR AND DOCKING OF AGONISTS
HOMOLOGY MODELING OF ARYL HYDROCARBON RECEPTOR AND DOCKING OF AGONISTS

... the antagonists, both flavonoids and nonflavonoids form H-bonds with the amino acid residues on the AhR which include His-285, Ser340, Thr-343 and Thr-283. The flavonoids formed H-bonds with the receptor mainly via groups present on the 3’ and 4’ position of the Bring. Highest activity was reported ...
Full Text
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Nickel(II) cis- and trans-Dimethyl Complexes of
Nickel(II) cis- and trans-Dimethyl Complexes of

... been prepared and characterized by single-crystal X-ray diffraction, and the complex [Ni(tBuCCmeth)Me2] (3) has been observed spectroscopically. Thermal decomposition studies show that 2 eliminates methane rapidly and quantitatively above 50 °C by a predominantly unimolecular dissociative pathway wi ...
Biochem19_Aerobic Respiration
Biochem19_Aerobic Respiration

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Equilibrium
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... The activation energy barrier for a catalyzed reaction is lower than that of a uncatalyzed reaction. With a lower activation energy barrier, more reactants have the energy to form products within a given time. Because a catalyst is not consumed during a reaction, it does not appear as a reactant or ...
Catalytic, Enantioselective Alkylation of r
Catalytic, Enantioselective Alkylation of r

... enantioselective aldol additions catalyzed by Lewis acids have been developed.1 Analogous alkylations of imines, however, have not been nearly as well studied nor as successful.2 R-Imino esters are almost unstudied in Lewis acid-catalyzed reactions,3 but are especially attractive imine substrates fo ...
PDF - BMC Genomics
PDF - BMC Genomics

... development of a novel profile that can provide suitable information to the algorithm. One of the key features of this profiling technique is the use of multiple structural alignments of remote homologues to create an extended sequence profile and combines the structural information with suitable ch ...
Chapter 6. Metabolism & Enzymes
Chapter 6. Metabolism & Enzymes

...  the amount of energy needed to destabilize the bonds of a molecule ...
Chapter 6. Metabolism & Enzymes
Chapter 6. Metabolism & Enzymes

...  the amount of energy needed to destabilize the bonds of a molecule ...
Authors` version - The Computable Plant
Authors` version - The Computable Plant

... Systems biology may be broadly defined as the integration of diverse data into useful biological models that allow scientists to easily observe complex cellular behaviors and to predict the outcomes of metabolic and genetic perturbations. As a first step towards the elucidation of the systems biolog ...
Structure and physical-chemical properties of enzymes
Structure and physical-chemical properties of enzymes

... with SOD to reduce free radical productionCellulasedigests cellulose, the fibrous component of most vegtable matter Chymotrypsinhelps ...
Roles of zinc(l1) ion in zinc enzymes
Roles of zinc(l1) ion in zinc enzymes

... The ZnII complexes of 1 and 2 promote the hydrolysis of tris(4-nitrophenyl)phosphate, TNPO (a neutral phosphotriester), and bis(4-nitrophenyl)phosphate, BNP- (a moiioanionic phosphodiester). Kinetic studies show that the reactive species are commonly L-ZnII-OH- (5 for L = 1) and the kinetically obta ...
U3 Student Workbook - The Connected Chemistry Curriculum
U3 Student Workbook - The Connected Chemistry Curriculum

... • leaves changing color in the fall • burning a candle • frying an egg 1. What do all these things or events have in common? ...
triose phosphate
triose phosphate

... Aerobic Respiration Respiration is the process that releases energy in organic molecules such as sugars and lipids. Respiration takes place in all cells all of the time Breathing is the mechanical process that supplies oxygen to the body for respiration and that removes carbon dioxide produced. Bre ...
Dusty Carroll Lesson Plan 4
Dusty Carroll Lesson Plan 4

... o Helices and beta sheets as symbolized o Strands that are not helices or beta sheets o Show the regions where the active sites are o Discuss the meaning of “active site” (the specific portion of the enzyme that interacts with the substrate) • Connect the idea of an enzyme to that of a catalyst (sma ...
Potential Role of Sulfur-Containing Antioxidant Systems in Highly
Potential Role of Sulfur-Containing Antioxidant Systems in Highly

... synthesize ATP from ADP and inorganic phosphate (Pi) during the oxidation of organic molecules such as carbohydrates, fats and proteins. Oxidation is a crucial part of both aerobic life and metabolism [1] because it provides energy for the cell to perform its functions. Molecular oxygen, which is ne ...
Hydrodynamic Studies on the Manganese
Hydrodynamic Studies on the Manganese

... II membranes were isolated by the procedure of Berthold et al. (16) as modified by Ghanotakis and Babcock (17). These membranes were suspended to a concentration of 1 mg/mL chl in 1.0 M NaCl, 300 mM sucrose, 10 mM MgCl2, and 50 mM Mes-NaOH, pH 6.0, and incubated for 1 h. The PS II membranes, which w ...
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Multi-state modeling of biomolecules

Multi-state modeling of biomolecules refers to a series of techniques used to represent and compute the behaviour of biological molecules or complexes that can adopt a large number of possible functional states.Biological signaling systems often rely on complexes of biological macromolecules that can undergo several functionally significant modifications that are mutually compatible. Thus, they can exist in a very large number of functionally different states. Modeling such multi-state systems poses two problems: The problem of how to describe and specify a multi-state system (the ""specification problem"") and the problem of how to use a computer to simulate the progress of the system over time (the ""computation problem""). To address the specification problem, modelers have in recent years moved away from explicit specification of all possible states, and towards rule-based formalisms that allow for implicit model specification, including the κ-calculus, BioNetGen, the Allosteric Network Compiler and others. To tackle the computation problem, they have turned to particle-based methods that have in many cases proved more computationally efficient than population-based methods based on ordinary differential equations, partial differential equations, or the Gillespie stochastic simulation algorithm. Given current computing technology, particle-based methods are sometimes the only possible option. Particle-based simulators further fall into two categories: Non-spatial simulators such as StochSim, DYNSTOC, RuleMonkey, and NFSim and spatial simulators, including Meredys, SRSim and MCell. Modelers can thus choose from a variety of tools; the best choice depending on the particular problem. Development of faster and more powerful methods is ongoing, promising the ability to simulate ever more complex signaling processes in the future.
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