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Sup2 - Postech
Sup2 - Postech

... The molecular mass of the PfNurA was analyzed by analytical ultracentrifugation (Optima XL-A; Beckman, Fullerton, CA, USA) using the sedimentation equilibrium technique. Sedimentation equilibrium data were evaluated using a nonlinear leastsquares curve-fitting algorithm (XL-A data analysis software) ...
Practice Exam II
Practice Exam II

... a). The slope (n) of the Fractional saturation plot for hemoglobin binding oxygen is >1. b). The slope (n) of the Hill plot for hemoglobin binding oxygen is >1. c). The slope (n) of the Bohr saturation plot for hemoglobin binding oxygen is =1. d). The slope (n) of the Hill saturation plot for hemogl ...
Modelling glycolysis with Cellware
Modelling glycolysis with Cellware

... Recent advances in biological sciences and information technology have made the development of “computer assisted biology” possible and the research performed this way is often referred to be done “in silico”. Computers were initially used mostly for storing information but their capability to solve ...
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Biochemistry 3100 Sample Problems Binding proteins, Kinetics & Catalysis eg
Biochemistry 3100 Sample Problems Binding proteins, Kinetics & Catalysis eg

... Note: the pkas can be determined by extrapolating the slope of each side of the bell curve and the  plateau region. The intersection between the extrapolated slope and plateau lines gives the pkas. 13b – If the catalytic residues had pKa's that were perturbed, at the very least we would have evidenc ...
Marco Teiber and Thomas JJ Müller
Marco Teiber and Thomas JJ Müller

... • One-pot three-component syntheses of conjugated terthiophenes, quaterthiophenes, quinquethiophenes, and related carbazole derivatives with ω-hydroxy carboxy or ω-amino carboxy functionality. Electronic characterization of the monomers by optical and electrochemical methods • The lipase catalyzed o ...
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... are called the reactants. • The molecules that you end • with are called products. ...
Lesson 2.2: True or False
Lesson 2.2: True or False

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Design and chance in the self
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... the surface match [10,11]. These deformations may be energetically demanding in some cases, and so contribute to the discrimination of cognate from non-cognate interactions. When considering these biological macromolecules and assemblies with an eye for application in nanoscale engineering, one must ...
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SYNTHESIS OF GOLD NANOPARTICLES (Au@ligand

... assisted by AuNPs appears particularly fruitful in the development of therapeutic agents and tools for biology. For example, AuNPs ensure efficient, considerably enhanced delivery and intracellular uptake of the drug by cancer cells, compared to the same drug in typically administered free form. Enh ...
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Practice Free Response Question, Biochemistry

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Section 16.1 A Model for Reaction Rates
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BIOCHEMICAL METHODS USED IN PROTEN CHARACTERIZATION
BIOCHEMICAL METHODS USED IN PROTEN CHARACTERIZATION

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BIOCHEMICAL METHODS USED IN PROTEN CHARACTERIZATION
BIOCHEMICAL METHODS USED IN PROTEN CHARACTERIZATION

... Increasing salt concentrationn: attracted of the water molecules by the salt ions, which decreases the number of water molecules available to interact with protein. Increasing ionic strength decrease solubility of a protein. In general: a) small proteins more soluble than large proteins b) the lar ...
Homology modeling with SWISS
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... complete atomic structure of at least one other reference protein is known • The reference protein must be structurally homologous to the model protein being build. Structural segments, which are thought to be conserved within the family of homologous proteins are taken directly from the reference p ...
Combinatorial Chemistry and Drug Discovery
Combinatorial Chemistry and Drug Discovery

... positions on another monosaccharide in a chain or to another type of molecule. Thus, it has been pointed out that although three nucleotide bases or amino acids can only generate six variations, three hexoses could produce (depending on which factors are considered) anywhere from 1,056 to 27,648 uni ...
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Final Exam Study Guide Page 1 Quiz
Final Exam Study Guide Page 1 Quiz

... c. 1.5 x 1025 moles d. none of the above 2. How many grams are in 6.2 moles of NH4? a. .34 g b. 111.8 g c. 6.2 g d. 11.6 g 3. One mole of CaCO3 is equal to how many molecules of CaCO3? a. 765 molecules b. 249 molecules c. 7.6 x 1024 molecules d. 6.02 x 1023 molecules 4. How many grams of sodium are ...
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Chapter 3. Analysis of Environmental System 3.1 Analysis of a

... Eq.(3.1.3) may be solved without any difficulty if we follow the process as we have done so far. Especially, when discharging rate of a pollutant into the lake is constant, it is much easier because the condition is steady state, dC/dt = 0. ...
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Chemical Reactions

... 1. Determine the correct formulas for all 4. Balance the elements one at a time by the reactants and products. using coefficients. When no coefficient is written, it is assumed to be 1. Begin by 2. Write the skeleton equation by placing the formulas for the reactants on the left balancing elements t ...
practice midterm answers
practice midterm answers

... 6) . F . The average molecular weight of an amino acid in proteins is 128. 7) . F . In proteins, alpha helices are almost always left handed. 8) . F . Van der Waals interactions are too weak to stabilize proteins. 9) . F . HCl is a strong acid. This means it does not dissociate at all. 10) . T . All ...
ch-3-bio-molecules
ch-3-bio-molecules

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N & V
N & V

... catecholamines, suggesting that the immobilized Cu 2+ enhanced the specificity to catechol within the channel. However, the dissociation rate constants did not differ by more than 30% for the three catecholamines, suggesting that the approach to target catechol may not be sufficient for speciation a ...
Oxidative Phosphorylation
Oxidative Phosphorylation

... is a map that shows components of a pathways of metabolism It is useful in tracing connections between pathways ...
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Multi-state modeling of biomolecules

Multi-state modeling of biomolecules refers to a series of techniques used to represent and compute the behaviour of biological molecules or complexes that can adopt a large number of possible functional states.Biological signaling systems often rely on complexes of biological macromolecules that can undergo several functionally significant modifications that are mutually compatible. Thus, they can exist in a very large number of functionally different states. Modeling such multi-state systems poses two problems: The problem of how to describe and specify a multi-state system (the ""specification problem"") and the problem of how to use a computer to simulate the progress of the system over time (the ""computation problem""). To address the specification problem, modelers have in recent years moved away from explicit specification of all possible states, and towards rule-based formalisms that allow for implicit model specification, including the κ-calculus, BioNetGen, the Allosteric Network Compiler and others. To tackle the computation problem, they have turned to particle-based methods that have in many cases proved more computationally efficient than population-based methods based on ordinary differential equations, partial differential equations, or the Gillespie stochastic simulation algorithm. Given current computing technology, particle-based methods are sometimes the only possible option. Particle-based simulators further fall into two categories: Non-spatial simulators such as StochSim, DYNSTOC, RuleMonkey, and NFSim and spatial simulators, including Meredys, SRSim and MCell. Modelers can thus choose from a variety of tools; the best choice depending on the particular problem. Development of faster and more powerful methods is ongoing, promising the ability to simulate ever more complex signaling processes in the future.
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