Alignments -> Database Searching
... dihedral angles φ against ψ of amino acid residues in protein structure. It shows the possible conformations of φ and ψ angles for a polypeptide. Mathematically, the Ramachandran plot is the visualization of a function (torus). Hence, the conventional Ramachandran plot is a projection of the torus o ...
... dihedral angles φ against ψ of amino acid residues in protein structure. It shows the possible conformations of φ and ψ angles for a polypeptide. Mathematically, the Ramachandran plot is the visualization of a function (torus). Hence, the conventional Ramachandran plot is a projection of the torus o ...
One Gene -One polypeptide
... Chapter 11.4 One gene=one polypeptide Overview of Protein Synthesis ...
... Chapter 11.4 One gene=one polypeptide Overview of Protein Synthesis ...
Protein modification
... Intramolecular Autoprocessing Reactions of Hh and Self-Splicing Proteins (A) Schematic drawing of a two-step mechanism for Hh autoprocessing (Porter et al., 1996b ). Aided by deprotonation by either solvent or a base (B1), the thiol group of Cys-258 initiates a nucleophilic attack on the carbonyl ca ...
... Intramolecular Autoprocessing Reactions of Hh and Self-Splicing Proteins (A) Schematic drawing of a two-step mechanism for Hh autoprocessing (Porter et al., 1996b ). Aided by deprotonation by either solvent or a base (B1), the thiol group of Cys-258 initiates a nucleophilic attack on the carbonyl ca ...
MPS1 Antibody / Metallopan-stimulin 1 (R32561)
... ribosomal proteins. It contains a C4-type zinc finger domain that can bind to zinc. The encoded protein has been shown to be able to bind to nucleic acid. It is located in the cytoplasm as a ribosomal component, but it has also been detected in the nucleus. Studies in rat indicate that ribosomal pro ...
... ribosomal proteins. It contains a C4-type zinc finger domain that can bind to zinc. The encoded protein has been shown to be able to bind to nucleic acid. It is located in the cytoplasm as a ribosomal component, but it has also been detected in the nucleus. Studies in rat indicate that ribosomal pro ...
Cells are exposed to DNA damaging agents that can affect their
... These are important steps to solve because most of the molecules of interest in biology do not have any symmetry, especially those of the so-called “molecular machines” where a collection of proteins interact to work in such various processes as DNA repair or RNA splicing. Also, some important molec ...
... These are important steps to solve because most of the molecules of interest in biology do not have any symmetry, especially those of the so-called “molecular machines” where a collection of proteins interact to work in such various processes as DNA repair or RNA splicing. Also, some important molec ...
“Virtual Cell” Activity
... The virtual cell will allow you to get a close-up view of several organelles in 3-D! You will be able to choose certain organelles within the cell and manipulate them by zooming in on the organelle, rotating the image, and dissecting several organelles to view their contents. ...
... The virtual cell will allow you to get a close-up view of several organelles in 3-D! You will be able to choose certain organelles within the cell and manipulate them by zooming in on the organelle, rotating the image, and dissecting several organelles to view their contents. ...
Regulation
... supercoiling, new sigma subunits, negative/positive regulatory proteins, attenuation, riboswitches). Control at the level of translation (translation initiation, mRNA stability, binding of a metabolite to a riboswitch, antisense RNA) Regulating the activity of a protein/enzyme (allosteric enzymes, c ...
... supercoiling, new sigma subunits, negative/positive regulatory proteins, attenuation, riboswitches). Control at the level of translation (translation initiation, mRNA stability, binding of a metabolite to a riboswitch, antisense RNA) Regulating the activity of a protein/enzyme (allosteric enzymes, c ...
Question 1 (7 points) - Di-Et-Tri
... b. What are the two organs where GLUT2 is mainly expressed? (2) Explain how the distinct kinetic properties of GLUT2 fits with the function of the protein in these organs? (2) Question 2 (4 points) Fatty acid synthesis describes the conversion of acetyl-CoA to fatty acyl-CoA. a. What enzyme catalyze ...
... b. What are the two organs where GLUT2 is mainly expressed? (2) Explain how the distinct kinetic properties of GLUT2 fits with the function of the protein in these organs? (2) Question 2 (4 points) Fatty acid synthesis describes the conversion of acetyl-CoA to fatty acyl-CoA. a. What enzyme catalyze ...
Test system for systems biology
... Proteome analysis quantitative proteomics (ICAT technology) to analyze 300 proteins in wild-type yeast with the system turned on and off ① Thirty of these proteins changed in the transition between these two biological states ② the mRNA and protein changes went in different directions for 15 of thes ...
... Proteome analysis quantitative proteomics (ICAT technology) to analyze 300 proteins in wild-type yeast with the system turned on and off ① Thirty of these proteins changed in the transition between these two biological states ② the mRNA and protein changes went in different directions for 15 of thes ...
BIO520 Final Exam 5/07 Jim Lund You may use any books, notes
... 8 (2pt). Aside from its sequence what other information describing a SNP is the most important and useful to know? 9 (2pt). You profile human adrenal tumor samples on a microarray and find that human estrogen receptor 1 (ESR1) is up-regulated in the tumor samples compared to the control samples. You ...
... 8 (2pt). Aside from its sequence what other information describing a SNP is the most important and useful to know? 9 (2pt). You profile human adrenal tumor samples on a microarray and find that human estrogen receptor 1 (ESR1) is up-regulated in the tumor samples compared to the control samples. You ...
Classification of protein functions
... sequences. This fact implies that they have similar but not identical protein structures Gilbert maintained that exons represent structural components of proteins that can be recombined in different contexts, as a mechanism of generation of new protein folds. This suggestion could not been supported ...
... sequences. This fact implies that they have similar but not identical protein structures Gilbert maintained that exons represent structural components of proteins that can be recombined in different contexts, as a mechanism of generation of new protein folds. This suggestion could not been supported ...
Chapter 4 - WordPress.com
... into lactic acid and small amounts of ATP. Aerobically, glucose is broken down completely (citric acid cycle) into carbon dioxide (CO2) and water (H2O) and large amounts of energy (ATP). • Glucose can be synthesized from nonglucose substances such as protein (gluconeogenesis). Slide 4 ...
... into lactic acid and small amounts of ATP. Aerobically, glucose is broken down completely (citric acid cycle) into carbon dioxide (CO2) and water (H2O) and large amounts of energy (ATP). • Glucose can be synthesized from nonglucose substances such as protein (gluconeogenesis). Slide 4 ...
Prezentace aplikace PowerPoint
... What is in the Sample Buffer? *Tris buffer to provide appropriate pH *SDS (sodium dodecyl sulphate) detergent to dissolve proteins and give them a negative charge *Glycerol to make samples sink into wells *Bromophenol Blue dye to visualize samples ...
... What is in the Sample Buffer? *Tris buffer to provide appropriate pH *SDS (sodium dodecyl sulphate) detergent to dissolve proteins and give them a negative charge *Glycerol to make samples sink into wells *Bromophenol Blue dye to visualize samples ...
Enzymes
... If the shape of hemoglobin were to change what type of consequences would this cause? ...
... If the shape of hemoglobin were to change what type of consequences would this cause? ...
BIOACTIVE PROTEINS
... Calmodulin is a bioactive protein isolated from bovine testes with a molecular weight of 16,7 kDa. The material is derived from cattle born and raised in Sweden, a country where BSE is non-existing. Calmodulin is a calcium-binding protein expressed in many eukaryotic cells. By binding to and regulat ...
... Calmodulin is a bioactive protein isolated from bovine testes with a molecular weight of 16,7 kDa. The material is derived from cattle born and raised in Sweden, a country where BSE is non-existing. Calmodulin is a calcium-binding protein expressed in many eukaryotic cells. By binding to and regulat ...
Chapter 1 I am - Mrs Smith`s Biology
... I am the class of protein formed by several spiral-shaped polypeptide molecules becoming linked together in parallel by cross-bridges, giving the protein a rope-like structure ...
... I am the class of protein formed by several spiral-shaped polypeptide molecules becoming linked together in parallel by cross-bridges, giving the protein a rope-like structure ...
Proteins
... make up the physical structure of cells. Enzymes catalyze chemical reactions. Other proteins are involved in transport and storage of chemicals, and yet others, for example hormones, are involved in the regulation of biological processes. Transmembrane proteins are involved in transmission of chemic ...
... make up the physical structure of cells. Enzymes catalyze chemical reactions. Other proteins are involved in transport and storage of chemicals, and yet others, for example hormones, are involved in the regulation of biological processes. Transmembrane proteins are involved in transmission of chemic ...
What happens to proteins key 14
... b. __Genes___ (not the kind you wear): DNA segment that codes for specific protein ...
... b. __Genes___ (not the kind you wear): DNA segment that codes for specific protein ...
Organelles of Animal Cells: The Endomembrane System 1. Describe
... List 3 specific functions that they perform for the cell. ...
... List 3 specific functions that they perform for the cell. ...
Representation of and Reasoning with signal networks
... • protein recruiting another protein – a process whereby certain molecules are attracted (recruited) by another molecule to a particular site within the cell, often to form a complex which is a component of a pathway. For example the T-cell receptor (TCR) is a membrane associated receptor with extra ...
... • protein recruiting another protein – a process whereby certain molecules are attracted (recruited) by another molecule to a particular site within the cell, often to form a complex which is a component of a pathway. For example the T-cell receptor (TCR) is a membrane associated receptor with extra ...
Chapter 14 Oxidative Phosphorylation Prokaryotes are bacteria
... Eukaryotes contain multiple chromosomes surrounded by a membrane (nucleus) and membrane-bound organelles. Some organelles such as the nucleus and mitochondrion have two membranes. Animal Cell ...
... Eukaryotes contain multiple chromosomes surrounded by a membrane (nucleus) and membrane-bound organelles. Some organelles such as the nucleus and mitochondrion have two membranes. Animal Cell ...
Interactions of bacterial and viral proteins with mitochondria
... Assessment of active and successful participation in the practical (50%) and a written project report (50%) ...
... Assessment of active and successful participation in the practical (50%) and a written project report (50%) ...
Protein moonlighting
Protein moonlighting (or gene sharing) is a phenomenon by which a protein can perform more than one function. Ancestral moonlighting proteins originally possessed a single function but through evolution, acquired additional functions. Many proteins that moonlight are enzymes; others are receptors, ion channels or chaperones. The most common primary function of moonlighting proteins is enzymatic catalysis, but these enzymes have acquired secondary non-enzymatic roles. Some examples of functions of moonlighting proteins secondary to catalysis include signal transduction, transcriptional regulation, apoptosis, motility, and structural.Protein moonlighting may occur widely in nature. Protein moonlighting through gene sharing differs from the use of a single gene to generate different proteins by alternative RNA splicing, DNA rearrangement, or post-translational processing. It is also different from multifunctionality of the protein, in which the protein has multiple domains, each serving a different function. Protein moonlighting by gene sharing means that a gene may acquire and maintain a second function without gene duplication and without loss of the primary function. Such genes are under two or more entirely different selective constraints.Various techniques have been used to reveal moonlighting functions in proteins. The detection of a protein in unexpected locations within cells, cell types, or tissues may suggest that a protein has a moonlighting function. Furthermore, sequence or structure homology of a protein may be used to infer both primary function as well as secondary moonlighting functions of a protein.The most well-studied examples of gene sharing are crystallins. These proteins, when expressed at low levels in many tissues function as enzymes, but when expressed at high levels in eye tissue, become densely packed and thus form lenses. While the recognition of gene sharing is relatively recent—the term was coined in 1988, after crystallins in chickens and ducks were found to be identical to separately identified enzymes—recent studies have found many examples throughout the living world. Joram Piatigorsky has suggested that many or all proteins exhibit gene sharing to some extent, and that gene sharing is a key aspect of molecular evolution. The genes encoding crystallins must maintain sequences for catalytic function and transparency maintenance function.Inappropriate moonlighting is a contributing factor in some genetic diseases, and moonlighting provides a possible mechanism by which bacteria may become resistant to antibiotics.