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ch-3-bio-molecules
ch-3-bio-molecules

... Organic molecules are important because they are general types of molecules that all living organisms synthesize and use; they are essential for life ...
Lecture 10 - Columbus Labs
Lecture 10 - Columbus Labs

... Structural basis of the collagen triple helix • Every third residue faces the crowded center of the helix - only Gly fits here • Pro and HyP suit the constraints of phi and psi • Interchain H-bonds involving HyP stabilize helix • Fibrils are further strengthened by intrachain lysine-lysine and inte ...
Chapter 05 Lecture PowerPoint
Chapter 05 Lecture PowerPoint

... • High-resolution separation of proteins can be achieved by two-dimensional gel electrophoresis • Ion-exchange chromatography can be used to separate substances according to their sizes • Gel filtration chromatography uses columns filled with porous resins that let in smaller substances ...
Untitled
Untitled

... the ionic strength (salt concentration) of the buffer or, occasionally, by changing the pH. As ionic strength increases, the salt ions (typically Na + or Cl-) compete with the bound components for charges on the surface of the medium and one or more of the bound species begin to elute and move down ...
RNA analysis on non-denaturing agarose gel electrophoresis
RNA analysis on non-denaturing agarose gel electrophoresis

... Note: If your experimental RNA is shorter than expected and/or degraded according to electrophoresis data, prepare fresh RNA after checking the quality of RNA purification reagents. If problems persist, you may need to find another source of tissue/cells. In some cases, partially degraded RNA is onl ...
Protein engineering: navigating between chance and reason
Protein engineering: navigating between chance and reason

... that join the substrates to be purified. In an initial demonstration of the system, they selected for yeast encoding enzymes with substrate-joining activity and used flow cytometry to enrich this population by a factor of 6,000. Eight rounds of screening produced an enzyme with a 140-fold increase i ...
Creation of the largest human-designed protein boosts
Creation of the largest human-designed protein boosts

... common of which are a rod-like spiral shape called the alpha-helix and a flat, pleated shape called the beta-sheet. These secondary structures, in turn, interact, fold and coil to form the protein’s three-dimensional shape, which is the key to its function. Over the past 10 years an increasing numbe ...
Prokaryotic Cells, Eukaryotic cells and HIV: Structures, Transcription
Prokaryotic Cells, Eukaryotic cells and HIV: Structures, Transcription

... ER is contiguous with the nuclear membrane, but this does NOT mean that the the proteins, lipids, etc. in the two membranes are the same. Golgi apparatus - a stack of flattened disks of membrane that receives proteins from the ER, modifies them and directs them to other organelles, the plasma membra ...
1 Lecture 20: Analysis of Enzyme Inhibition
1 Lecture 20: Analysis of Enzyme Inhibition

... iii) Which step in the above purification scheme was a complete waste of time? How do you know? iv) Is the protein pure after the last step? Evaluating Final Purity: After the protein is pure, its purity can be monitored by: a) SDS-page gel electrophoresis. b) Mass spectrometry. c) Amino terminal se ...
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slides

... is good (good distances are small). Also may want to include other computable attributes of the point. ...
Macromolecules Worksheet #2
Macromolecules Worksheet #2

... group (–COOH), an amine group (–NH2), a hydrogen atom (–H), and a side group that varies depending on the type of amino acid. Twenty common amino acids can combine in various ways to make different protein molecules. The sequence of amino acids in each protein is unique to that protein, so each prot ...
1 Lecture 6: Protein Primary, Secondary and Tertiary Structure +
1 Lecture 6: Protein Primary, Secondary and Tertiary Structure +

... identical or dissimilar subunits. Viewing protein structures at the various hierarchical levels listed above is an essential part of understanding the overall and the detailed aspects of protein structure and function. Native Structure: The native conformation of a given protein is its functionally ...
Plasma membrane
Plasma membrane

... An artificial cell consisting of an aqueous solution enclosed in a selectively permeable membrane has just been immersed in a beaker containing a different solution. The membrane is permeable to water and to the simple sugars glucose and fructose but completely impermeable to sucrose. ...
Homework 3 - Haixu Tang`s Homepage
Homework 3 - Haixu Tang`s Homepage

... obtained reads (fragments) with coverage 10, i.e. in average, each nucleotide in the target DNA is covered by 10 different reads (as in the following figure). Suppose the distribution of sequencing errors is dependent on the real nucleotides, i.e. the probability distribution P(X|Y) over nucleotides ...
presentation
presentation

... With this level of understanding we can affect a protein either by enhancement or by suppression. ...
April 3 lecture slides
April 3 lecture slides

... Both mating type genes are located on chromosome III of Saccharomyces. The mating type of the cell is determined by the sequence present at the MAT site ...
Week Of: 8/22-8/26
Week Of: 8/22-8/26

... objective should be essential an agreed upon functions of a topic, skill, or concept from the cell involve guaranteed ACPSD chemical curriculum. reactions that take place between many different types of molecules (including carbohydrate s, lipids, proteins and nucleic acids) and are catalyzed by enz ...
Unit 1 Test Biology Chapter 2.3
Unit 1 Test Biology Chapter 2.3

... - Carbon is often called the building block of life because carbon atoms are the basis of most molecules that make up living things. ...
Protein Purification 2003
Protein Purification 2003

... • Pores in the dialysis membrane are of a certain size. • Protein stays in; water, salts, protein fragments, and other molecules smaller than the pore size pass through. ...
Macromolecules of the Cell
Macromolecules of the Cell

... This depends mainly on the interactions that take place between the R-groups of the amino acids. This structure reflects nonrepetitive and unique aspect of each polypeptide because it depends on ...
Chapter 6
Chapter 6

... After a few days of low carbohydrate intake (or fasting), the metabolism of fatty acids by most cells increases dramatically. At this point, ketone bodies will be produced more and more… as you know, this will provide another source of energy to the brain and will spare some structural proteins. The ...
Small-scale platform for high-throughput identification of proteins
Small-scale platform for high-throughput identification of proteins

... The eukaryotic genes selected by CESG are fused to an N-terminal (His)ntagged (n=6 or 8) maltose binding protein (MBP which enhances solubility and expression levels), and a TEV protease cleavage site is located between the MBP and target protein (just in front of the cloned gene segment). The trans ...
Functional genomics: assigning functions to genome sequences
Functional genomics: assigning functions to genome sequences

... Limitations of Relying Entirely on Homology-Based Targeting • Many (most ?) proteins function in complexes made up of non-homologous proteins • Some (many ?) proteins are crystallizable only with their functional partners Suggests that targeting of non-homologus, functionally linked proteins may of ...
Enterokinase (E4906)
Enterokinase (E4906)

... Unit Definition: One unit will produce 1.0 nmole of trypsin from trypsinogen per minute at pH 5.6 at 25 °C. Purity: ≥95% (SDS–PAGE) Sigma brand products are sold through Sigma-Aldrich, Inc. Sigma-Aldrich, Inc. warrants that its products conform to the information contained in this and other Sigma-Al ...
Nutrition - GCO 2 - Proteins.notebook
Nutrition - GCO 2 - Proteins.notebook

...       ­ A high­protein diet produces an excess of nitrogen waste.       ­ The liver converts nitrogen waste into urea.       ­ The kidneys excrete urea in the urine.       ­ Excess protein creates extra work for the liver and kidneys.       ­ Stress on these organs can cause them to age prematurely. ...
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QPNC-PAGE

QPNC-PAGE, or quantitative preparative native continuous polyacrylamide gel electrophoresis, is a high-resolution technique applied in biochemistry and bioinorganic chemistry to separate proteins by isoelectric point. This standardized variant of native gel electrophoresis is used by biologists to isolate active or native metalloproteins in biological samples and to resolve properly and improperly folded metal cofactor-containing proteins or protein isoforms in complex protein mixtures.
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