Tools for Comparing Bacterial Genomes
... Genome atlases are available from our web server2 for many of the currently sequenced bacterial genomes. > Figure 2 shows a Genome Atlas for the chromosome of Geobacillus kaustophilus strain HTA426 (a thermophilic Firmicute that also contains a plasmid of 4.8 kb). This isolate was obtained from a de ...
... Genome atlases are available from our web server2 for many of the currently sequenced bacterial genomes. > Figure 2 shows a Genome Atlas for the chromosome of Geobacillus kaustophilus strain HTA426 (a thermophilic Firmicute that also contains a plasmid of 4.8 kb). This isolate was obtained from a de ...
Review of “Transposable elements have rewired the core regulatory
... * longer k-mers, smaller number of matches, fewer false positives. ...
... * longer k-mers, smaller number of matches, fewer false positives. ...
CS 2427 - Algorithms in Molecular Biology Lecture #2: 13 January
... to 3 direction, this tells us nothing about which way the fragment was originally oriented in the genome. In other words, the problem of putting all of the pieces together is complicated by the fact that we don’t know which strand each read came from; in fact, exactly half of the reads are from one ...
... to 3 direction, this tells us nothing about which way the fragment was originally oriented in the genome. In other words, the problem of putting all of the pieces together is complicated by the fact that we don’t know which strand each read came from; in fact, exactly half of the reads are from one ...
When we talk about gene position the term is used to designate the
... Crossovers between homologous chromosomes occur more or less at random during meiosis. To give you a rough idea of how frequent these crossovers are, in several different well studied organisms (Yeast, Drosophila, and humans) there is about one crossover per chromosome arm per meiosis. The geneticis ...
... Crossovers between homologous chromosomes occur more or less at random during meiosis. To give you a rough idea of how frequent these crossovers are, in several different well studied organisms (Yeast, Drosophila, and humans) there is about one crossover per chromosome arm per meiosis. The geneticis ...
Study Guide for LS
... - According to Chargaff’s rules Adenine always pairs with Thymine and Cytosine always pairs with Guanine. A-T and C-G - Understand what a complementary strand of DNA is. Example: The complementary strand of ATTGCCG is TAACGGC because A goes to T and G always goes to C. ...
... - According to Chargaff’s rules Adenine always pairs with Thymine and Cytosine always pairs with Guanine. A-T and C-G - Understand what a complementary strand of DNA is. Example: The complementary strand of ATTGCCG is TAACGGC because A goes to T and G always goes to C. ...
6.4 Traits, Genes, and Alleles KEY CONCEPT of traits.
... • An allele is any alternative form of a gene occurring at a specific locus on a chromosome. – Each parent donates one allele for every gene. – Homozygous describes two alleles that are the same at a specific locus. – Heterozygous describes two alleles that are different at a specific locus. ...
... • An allele is any alternative form of a gene occurring at a specific locus on a chromosome. – Each parent donates one allele for every gene. – Homozygous describes two alleles that are the same at a specific locus. – Heterozygous describes two alleles that are different at a specific locus. ...
6.4 Traits, Genes, and Alleles
... • An allele is any alternative form of a gene occurring at a specific locus on a chromosome. – Each parent donates one allele for every gene. – Homozygous describes two alleles that are the same at a specific locus. – Heterozygous describes two alleles that are different at a specific locus. ...
... • An allele is any alternative form of a gene occurring at a specific locus on a chromosome. – Each parent donates one allele for every gene. – Homozygous describes two alleles that are the same at a specific locus. – Heterozygous describes two alleles that are different at a specific locus. ...
Lecture 15 POWERPOINT here
... process by which a gene's DNA sequence is converted into the structures and functions of a cell. ...
... process by which a gene's DNA sequence is converted into the structures and functions of a cell. ...
Genetics Unit Review
... An RNA molecule with a specific code for a polypeptide. This code is determined by the sequence of bases of the DNA molecule in the nucleus. ...
... An RNA molecule with a specific code for a polypeptide. This code is determined by the sequence of bases of the DNA molecule in the nucleus. ...
(GWAS) and Personalized Medicine
... • A brute force approach of examining the entire genome to identify SNPs that might be disease causing mutations • Far exceeds the scope of family linkage and candidate gene approaches • Must obtain a comprehensive picture of all possible genes involved in a disease and how they interact • Objective ...
... • A brute force approach of examining the entire genome to identify SNPs that might be disease causing mutations • Far exceeds the scope of family linkage and candidate gene approaches • Must obtain a comprehensive picture of all possible genes involved in a disease and how they interact • Objective ...
AP Biology Review Sheet for Chapters 18,19, and 20 Test (Test on
... Understand the difference between lysogenic and lytic cycles for virus reproduction Understand how HIV, as a retrovirus, works Understand the different ways in which bacteria can reproduce and share genetic information Understand the difference between the lac and trp operons ...
... Understand the difference between lysogenic and lytic cycles for virus reproduction Understand how HIV, as a retrovirus, works Understand the different ways in which bacteria can reproduce and share genetic information Understand the difference between the lac and trp operons ...
Lecture 6 Gene expression: microarray and deep sequencing
... Currently – much cheaper/faster than sequencing; widely used http://www.microarraystation.com/dna-microarray-timeline/ Timeline of DNA Microarray Developments 1991: Photolithographic printing (Affymetrix) 1994: First cDNA collections are developed at Stanford 1995: Quantitative monitoring of gene ex ...
... Currently – much cheaper/faster than sequencing; widely used http://www.microarraystation.com/dna-microarray-timeline/ Timeline of DNA Microarray Developments 1991: Photolithographic printing (Affymetrix) 1994: First cDNA collections are developed at Stanford 1995: Quantitative monitoring of gene ex ...
Chapter 12 “DNA, RNA, and Protein Synthesis” Reading/Study Guide
... 22. What is the purpose of RNA polymerase? ...
... 22. What is the purpose of RNA polymerase? ...
Chapter 3
... Introns can be detected by the presence of additional regions when genes are compared with their RNA products by restriction mapping or electron microscopy. o The ultimate definition, though, is based on comparison of sequences. The positions of introns are usually conserved when homologous genes ar ...
... Introns can be detected by the presence of additional regions when genes are compared with their RNA products by restriction mapping or electron microscopy. o The ultimate definition, though, is based on comparison of sequences. The positions of introns are usually conserved when homologous genes ar ...
genes
... Individuals that contain two copies of the same specific allele of a particular gene are said to be HOMOZYGOUS for that gene. ...
... Individuals that contain two copies of the same specific allele of a particular gene are said to be HOMOZYGOUS for that gene. ...
Genomic tools and Drug resistance dmedupe
... recombination disrupt linkage disequilibrium. However, drug resistance is such a recent evolutionary event that the high rate of recombination has not disrupted its linkage disequilibrium yet. Linkage disequilibrium can therefore be used to track the spread of the resistance gene in the population. ...
... recombination disrupt linkage disequilibrium. However, drug resistance is such a recent evolutionary event that the high rate of recombination has not disrupted its linkage disequilibrium yet. Linkage disequilibrium can therefore be used to track the spread of the resistance gene in the population. ...
Alleles - Schoolwires.net
... skin, hair and eyes are the result of several genes acting together. • Therefore it is difficult to tell if some traits are the result of dominant or recessive genes. ...
... skin, hair and eyes are the result of several genes acting together. • Therefore it is difficult to tell if some traits are the result of dominant or recessive genes. ...
Inferring Function From Known Genes
... used to infer the function of unknown genes in a microarray experiment. 3) Pathway analysis If the genes are sufficiently well understood, they may be assembled into networks showing which genes regulate other genes. Unknown genes that have expression patterns similar to those in the network can be ...
... used to infer the function of unknown genes in a microarray experiment. 3) Pathway analysis If the genes are sufficiently well understood, they may be assembled into networks showing which genes regulate other genes. Unknown genes that have expression patterns similar to those in the network can be ...
Genetics Basics 3 - The Science Spot
... Use your knowledge of genetics to answer each question 1. What term refers to the actual genetic make-up of a trait? Example: Yy or RR 2. What term refers to the gene that is NOT expressed when two different genes for a trait are present in a gene pair? 3. If you are the parental generation, what t ...
... Use your knowledge of genetics to answer each question 1. What term refers to the actual genetic make-up of a trait? Example: Yy or RR 2. What term refers to the gene that is NOT expressed when two different genes for a trait are present in a gene pair? 3. If you are the parental generation, what t ...
Genetics Slides - The Adapa Project
... BRCA-1 and most other genes either: Do not create a visible genotype, or The genotype appears too late to be useful for diagnosis or ...
... BRCA-1 and most other genes either: Do not create a visible genotype, or The genotype appears too late to be useful for diagnosis or ...
Gene Trees, Populations and the Microbial Species Concept
... • Don’t need an entire genome • Serves as a proxy for phenotype ...
... • Don’t need an entire genome • Serves as a proxy for phenotype ...
DNA: The Secret of Life
... Inheritance, but we did not always know this fact. • Inheritance is easy to observe ...
... Inheritance, but we did not always know this fact. • Inheritance is easy to observe ...
Genome evolution
Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome evolution involves multiple fields such as structural analysis of the genome, the study of genomic parasites, gene and ancient genome duplications, polyploidy, and comparative genomics. Genome evolution is a constantly changing and evolving field due to the steadily growing number of sequenced genomes, both prokaryotic and eukaryotic, available to the scientific community and the public at large.