3 -2 -1 -2 -1 1 2 K
... From raw scores to bit scores • There are two kinds of scores: raw scores (calculated from a substitution matrix) and bit scores (normalized scores) • Bit scores are comparable between different searches because they are normalized to account for the use of different scoring matrices and different ...
... From raw scores to bit scores • There are two kinds of scores: raw scores (calculated from a substitution matrix) and bit scores (normalized scores) • Bit scores are comparable between different searches because they are normalized to account for the use of different scoring matrices and different ...
Gentile, Margaret: Computational Methods for the Design of PCR Primers for the Amplification of functional Markers from Environmental Samples
... Computational methods of CODEHOP The computational methods used in CODEHOP, along with the novel consensusdegenerate regions, are very rigorous and allow for amplification of much more diversity. The method was outlined in Nucleic Acids Research (Rose et al., 1998). CODEHOP works with amino acid seq ...
... Computational methods of CODEHOP The computational methods used in CODEHOP, along with the novel consensusdegenerate regions, are very rigorous and allow for amplification of much more diversity. The method was outlined in Nucleic Acids Research (Rose et al., 1998). CODEHOP works with amino acid seq ...
Genetic Inversion: Relationships Among Species
... different pairs of sequences need to transform one sequence of the pair into the other sequence of the pair. ...
... different pairs of sequences need to transform one sequence of the pair into the other sequence of the pair. ...
Slide 1
... Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. Trends Genet. 2006, 22(1):5-10. ...
... Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. Trends Genet. 2006, 22(1):5-10. ...
Indexing and Searching Video Sequences Using Concept Lattices
... extent of Q and its subsumers in the concept lattice (indicated by numbered rectangles other than the top concept in Figure 2) since the intent of each one of these concepts is a subset of QB (the intent of the query concept). In the following, we will denote by Rvideos the set of relevant video seq ...
... extent of Q and its subsumers in the concept lattice (indicated by numbered rectangles other than the top concept in Figure 2) since the intent of each one of these concepts is a subset of QB (the intent of the query concept). In the following, we will denote by Rvideos the set of relevant video seq ...
Contig annotation tool CAT robustly classifies assembled
... Third, the individual taxonomic classifications are integrated across all ORFs to derive a robust classification of the full DNA sequence. To do this, the B values of all ORFs assigned to the same taxon are summed for each taxon (ΣBtaxon), where the taxonomic annotations of T and all of its parents ...
... Third, the individual taxonomic classifications are integrated across all ORFs to derive a robust classification of the full DNA sequence. To do this, the B values of all ORFs assigned to the same taxon are summed for each taxon (ΣBtaxon), where the taxonomic annotations of T and all of its parents ...
Paper - George Karypis
... We rst derive an expression for the runtime of the parallel dense trapezoidal forward elimination algorithm. We present a conservative analysis assuming a naive implementation of the algorithm. We consider the case where the processors compute the blocks in a column major order. Same results hold t ...
... We rst derive an expression for the runtime of the parallel dense trapezoidal forward elimination algorithm. We present a conservative analysis assuming a naive implementation of the algorithm. We consider the case where the processors compute the blocks in a column major order. Same results hold t ...
Lecture 4
... Proteins are flexible. One would like to align proteins modulo the flexibility. Hinge and shear protein domain motions (Gerstein, Lesk , Chotia). Conformational flexibility in drugs. ...
... Proteins are flexible. One would like to align proteins modulo the flexibility. Hinge and shear protein domain motions (Gerstein, Lesk , Chotia). Conformational flexibility in drugs. ...
A Framework for Mining Sequential Patterns from Spatio
... – STS-Miner: A depth-first expand based mining method exploiting the weak antimonotone property of Sequence index. – Slicing-STS-Miner: Utilizes temporal slicing to partition the dataset into overlapping slices when the number of events is too large to be processed in memory. ...
... – STS-Miner: A depth-first expand based mining method exploiting the weak antimonotone property of Sequence index. – Slicing-STS-Miner: Utilizes temporal slicing to partition the dataset into overlapping slices when the number of events is too large to be processed in memory. ...
An Algorithm for Solving Scaled Total Least Squares Problems
... total least squares problems using the rank revealing ULV decomposition, which is an approximation of the complete orthogonal decomposition. To improve accuracy, in addition to the refinement, we proposed a technique for improving the accuracy of the estimates for the smallest nonzero singular value ...
... total least squares problems using the rank revealing ULV decomposition, which is an approximation of the complete orthogonal decomposition. To improve accuracy, in addition to the refinement, we proposed a technique for improving the accuracy of the estimates for the smallest nonzero singular value ...