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Time-Memory Trade-Off for Lattice Enumeration in a Ball
Time-Memory Trade-Off for Lattice Enumeration in a Ball

... for SVP and γ-CVP in 3n+o(n) . Contrary to Kannan enumeration, the running time is better but we need exponential memory. We also show that we can have a time/memory tradeoff with polynomial memory which is however worse than Kannan algorithm. ...
TCSS 343: Large Integer Multiplication Suppose we want to multiply
TCSS 343: Large Integer Multiplication Suppose we want to multiply

A Market-Based Study of Optimal ATM`S Deployment Strategy
A Market-Based Study of Optimal ATM`S Deployment Strategy

Sequence of Real Numbers
Sequence of Real Numbers

History and Philosophy of Science
History and Philosophy of Science

Shortest Paths in Directed Planar Graphs with Negative Lengths: a
Shortest Paths in Directed Planar Graphs with Negative Lengths: a

A+B
A+B

... an upper, but not a lower, bound on the worst-case time required for the algorithm as a function of the input size. • Table 2 displays the time needed to solve problems of various sizes with an algorithm using the indicated number of bit operations. Every bit operation takes nanosecond. Times of mor ...
What is an Evolutionary Algorithm?
What is an Evolutionary Algorithm?

Memetic Algorithm with Hybrid Mutation Operator
Memetic Algorithm with Hybrid Mutation Operator

software development and application in bioinformatics: single
software development and application in bioinformatics: single

20081014012746
20081014012746

... S1 = {x1, . , xk, xk+1, . , xl−1,xl, .. , xm}, then S2= {x1, .. , xl, xl−1, . , xk+1, xk,. . . , xm}.is the inversion offspring of S1 ...
Thomas  L. Magnanti and Georgia  Perakis
Thomas L. Magnanti and Georgia Perakis

... 3. The Method of Inscribed Ellipsoids (Khatchiyan, Tarasov, Erlikh [121, 1988). 4. Vaidya's algorithm (Vaidya [291, 1989). Motivated by the celebrity of these geometric algorithms for solving linear programming problems, in this paper we examine the question of whether similar geometric algorithms w ...
A Simulation Approach to Optimal Stopping Under Partial Information
A Simulation Approach to Optimal Stopping Under Partial Information

Introduction to Bioinformatics.
Introduction to Bioinformatics.

Full text
Full text

... Ln(g) = Fn+2(q)-qnF'n_2(q) ...
A Nonlinear Programming Algorithm for Solving Semidefinite
A Nonlinear Programming Algorithm for Solving Semidefinite

pplacer: linear time maximum-likelihood and Bayesian phylogenetic
pplacer: linear time maximum-likelihood and Bayesian phylogenetic

V. Clustering
V. Clustering

... V.1 Clustering tasks in text analysis(1/2)  Cluster hypothesis “Relevant documents tend to be more similar to each other than to nonrelevant ones.”  If cluster hypothesis holds for a particular document collection, then the clustering of documents may help to improve the search effectiveness. • I ...
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inf orms O R

Cover Letter
Cover Letter

... /note=Glimmers and GeneMark both agree with 34023. 34023 is selected because of better scores. CDS complement (34044 - 35870) /note=According to Phage DB, the function should be DNA Polymerase I. DNA primase/polymerase is the best match in function assignment table CDS complement (35893 - 36135) /no ...
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View Tutorial

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Supplementary Figures (doc 928K)

Book2Movie: Aligning Video scenes with Book chapters - CVHCI
Book2Movie: Aligning Video scenes with Book chapters - CVHCI

Segmentation using eigenvectors: a unifying view
Segmentation using eigenvectors: a unifying view

CS440 - Assignment 3
CS440 - Assignment 3

< 1 2 3 4 5 6 7 ... 21 >

Smith–Waterman algorithm

The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure.The algorithm was first proposed by Temple F. Smith and Michael S. Waterman in 1981. Like the Needleman–Wunsch algorithm, of which it is a variation, Smith–Waterman is a dynamic programming algorithm. As such, it has the desirable property that it is guaranteed to find the optimal local alignment with respect to the scoring system being used (which includes the substitution matrix and the gap-scoring scheme). The main difference to the Needleman–Wunsch algorithm is that negative scoring matrix cells are set to zero, which renders the (thus positively scoring) local alignments visible. Backtracking starts at the highest scoring matrix cell and proceeds until a cell with score zero is encountered, yielding the highest scoring local alignment. One does not actually implement the algorithm as described because improved alternatives are now available that have better scaling (Gotoh, 1982) and are more accurate (Altschul and Erickson, 1986).
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