Package ‘topGO’ October 14, 2014
... genes listed in the feasibleGenes attribute (if not empty). The function annFUN.db uses the mappings provided in the Bioconductor annotation data packages. For example, if the Affymetrix hgu133a chip it is used, then the user should set affyLib = "hgu133a.db". The functions annFUN.gene2GO and annFUN ...
... genes listed in the feasibleGenes attribute (if not empty). The function annFUN.db uses the mappings provided in the Bioconductor annotation data packages. For example, if the Affymetrix hgu133a chip it is used, then the user should set affyLib = "hgu133a.db". The functions annFUN.gene2GO and annFUN ...
IMGT-ONTOLOGY and IMGT databases, tools and Web
... Two hundred fifteen feature labels, based on the DESCRIPTION concept, are necessary in IMGT/LIGM-DB to describe all structural and functional subregions that compose IG and TR sequences (Giudicelli et al., 1997), whereas only seven of them are available in EMBL, GenBank or DDBJ. Annotation of sequen ...
... Two hundred fifteen feature labels, based on the DESCRIPTION concept, are necessary in IMGT/LIGM-DB to describe all structural and functional subregions that compose IG and TR sequences (Giudicelli et al., 1997), whereas only seven of them are available in EMBL, GenBank or DDBJ. Annotation of sequen ...
Genomic Databases for Tomato
... Abstract Tomato (Solanum lycopersicum) is a model plant of the Solanaceae family. Various biological aspects of tomato have been investigated with molecular biological approaches, and a significant amount of DNA and protein sequencing data on tomato has been accumulated. Recently, the number of toma ...
... Abstract Tomato (Solanum lycopersicum) is a model plant of the Solanaceae family. Various biological aspects of tomato have been investigated with molecular biological approaches, and a significant amount of DNA and protein sequencing data on tomato has been accumulated. Recently, the number of toma ...
2016 HSC Biology Marking Guidelines
... as one single haem unit is able to carry four oxygen molecules. Species A and Species B have different haemoglobin structures that are able to reach 100% saturation at differing partial pressures of oxygen. Species A and B are likely to have diverged from a common ancestor because of differing envir ...
... as one single haem unit is able to carry four oxygen molecules. Species A and Species B have different haemoglobin structures that are able to reach 100% saturation at differing partial pressures of oxygen. Species A and B are likely to have diverged from a common ancestor because of differing envir ...
Prof. Kamakaka`s Lecture 2 Notes
... Evolution cannot occur unless there are differences among individuals If individuals are identical and remain so generation after generation, there can be no evolution. Variation is important Variation must be transmitted from parent to offspring Mechanism of inheritance is important for understandi ...
... Evolution cannot occur unless there are differences among individuals If individuals are identical and remain so generation after generation, there can be no evolution. Variation is important Variation must be transmitted from parent to offspring Mechanism of inheritance is important for understandi ...
PDF
... that by stage 16, high levels are found in the entire SC population (Fig. 2C), which persists in larval and adult SCs (Fig. 2I,J). Tsh is not expressed in PCs at any stage (Fig. 2A-C,I,J). Expression of the tsh paralogue tio is found in a subset of PCs at stages 11 to 13 (Fig. 2D,E). Tio is first de ...
... that by stage 16, high levels are found in the entire SC population (Fig. 2C), which persists in larval and adult SCs (Fig. 2I,J). Tsh is not expressed in PCs at any stage (Fig. 2A-C,I,J). Expression of the tsh paralogue tio is found in a subset of PCs at stages 11 to 13 (Fig. 2D,E). Tio is first de ...
Water in plants and animals
... Understand why this can only take place if groups within the original species become isolated from each other. Know the different isolating mechanisms (geographical, ecological, reproductive) and know some examples of each. Understand why isolated groups evolve differently from each other, eventuall ...
... Understand why this can only take place if groups within the original species become isolated from each other. Know the different isolating mechanisms (geographical, ecological, reproductive) and know some examples of each. Understand why isolated groups evolve differently from each other, eventuall ...
Role of Che Y Protein in the Bacterial Chemosensory Information
... indicating a central role of Che Y in the sensory information pathway. Second site suppressors of Che Y isolated in Fla A locus indicating suggest some type of interaction between Che Y and the flagellar machinery. Che Y overexpression studies in strains deleted for Che A, Che B, Che W, Che R, Che Y ...
... indicating a central role of Che Y in the sensory information pathway. Second site suppressors of Che Y isolated in Fla A locus indicating suggest some type of interaction between Che Y and the flagellar machinery. Che Y overexpression studies in strains deleted for Che A, Che B, Che W, Che R, Che Y ...
Pisum Genetics Volume 24 1992 Research Reports
... of branching is confounded by the occurrence of early flowering segregates which have fewer nodes available for the production of aerial laterals. However, even when branching was examined solely in the late-flowering F2 segregates under an 8 h photoperiod, we could obtain no clear evidence of singl ...
... of branching is confounded by the occurrence of early flowering segregates which have fewer nodes available for the production of aerial laterals. However, even when branching was examined solely in the late-flowering F2 segregates under an 8 h photoperiod, we could obtain no clear evidence of singl ...
Neurospora - DiVA portal
... pheromone receptors pre-1 and pre-2, respectively (Kim and Borkovich, 2004; Pöggeler and Kuck, 2001). The pre-genes encode for 7transmembrane (7-TM) G-protein coupled receptors, which are embedded in the cell membrane, with an extracellular (EC) and a cytosolic tail. The intracellular parts of the ...
... pheromone receptors pre-1 and pre-2, respectively (Kim and Borkovich, 2004; Pöggeler and Kuck, 2001). The pre-genes encode for 7transmembrane (7-TM) G-protein coupled receptors, which are embedded in the cell membrane, with an extracellular (EC) and a cytosolic tail. The intracellular parts of the ...
DYAD in meiotic chromosome organisation - Development
... progression. The sequence of the putative protein encoded by DYAD did not reveal strong similarity to other proteins. DYAD is therefore likely to encode a novel protein required for meiotic chromosome organisation and female meiotic progression. ...
... progression. The sequence of the putative protein encoded by DYAD did not reveal strong similarity to other proteins. DYAD is therefore likely to encode a novel protein required for meiotic chromosome organisation and female meiotic progression. ...
Comprehensive Exam Mainul Islam Department of Computer
... bestMerit and bestRank • Only best four gene types according to the bestMerit and best seven gene types according to the bestRank ranking can achieve 90 percent of coverage within 10 percent of time ...
... bestMerit and bestRank • Only best four gene types according to the bestMerit and best seven gene types according to the bestRank ranking can achieve 90 percent of coverage within 10 percent of time ...
Read here - Protect the White Deer
... sometimes "leucistic") is generally used to refer to deer with just white coats, while "albino" refers to deer with additional pink eyes and noses--the result of a total lack of pigmentation which allows blood vessels to show through the eye covering and skin. The terms "white deer" and "albino deer ...
... sometimes "leucistic") is generally used to refer to deer with just white coats, while "albino" refers to deer with additional pink eyes and noses--the result of a total lack of pigmentation which allows blood vessels to show through the eye covering and skin. The terms "white deer" and "albino deer ...
Price, DK, Zhang, F, Ashley, CT and Warren, ST: The chicken FMR1 gene is highly conserved containing a CTT 5\' untranslated repeat and encodes an RNA-binding protein. Genomics 31:3-12 (1996).
... Compared to human FMR1, the chicken nucleotide sequence was 85% identical within the coding region. Notably, identity within the 3* UTR was 81%, with highest levels of identity (ú94%) localized to two distinct blocks of 3* sequence located approximately 60 and 600 bp downstream of the translational ...
... Compared to human FMR1, the chicken nucleotide sequence was 85% identical within the coding region. Notably, identity within the 3* UTR was 81%, with highest levels of identity (ú94%) localized to two distinct blocks of 3* sequence located approximately 60 and 600 bp downstream of the translational ...
Finding biologically relevant information using ADIOS
... Chong had a presentation in CBB545 # on Tuesday Chong had a presentation # next Thursday Laura has a presentation # ThaiBinh has a presentation in CBB545 # ThaiBinh has a presentation today # today ThaiBinh has a presentation # Chong had a presentation # Hugo has a presentation in CBB545 today # Tha ...
... Chong had a presentation in CBB545 # on Tuesday Chong had a presentation # next Thursday Laura has a presentation # ThaiBinh has a presentation in CBB545 # ThaiBinh has a presentation today # today ThaiBinh has a presentation # Chong had a presentation # Hugo has a presentation in CBB545 today # Tha ...
Package 'MatrixEQTL'
... The testing procedure accounts for extra covariates in cvrt parameter. The errorCovariance parameter can be set to the error variance-covariance matrix to account for heteroskedastic and/or correlated errors. Associations significant at pvOutputThreshold (pvOutputThreshold.cis) levels are saved to o ...
... The testing procedure accounts for extra covariates in cvrt parameter. The errorCovariance parameter can be set to the error variance-covariance matrix to account for heteroskedastic and/or correlated errors. Associations significant at pvOutputThreshold (pvOutputThreshold.cis) levels are saved to o ...
Trait to gene analysis reveals that allelic variation in three genes
... Predictable seedling establishment is essential for crop production to be both resource efficient and cost effective and is therefore widely accepted as a critically important trait for farmers and for food security. Seedling establishment is dependent upon high seed vigour, which is required to cop ...
... Predictable seedling establishment is essential for crop production to be both resource efficient and cost effective and is therefore widely accepted as a critically important trait for farmers and for food security. Seedling establishment is dependent upon high seed vigour, which is required to cop ...
quantitative genetics - E-Learning/An
... plotted as the point (65 inches, 22 students) on the graph in Figure 25.1b. This type of analysis can be conducted on any group of individuals who vary with regard to a quantitative trait. The line in the frequency distribution depicts a normal distribution, a distribution for a large sample in whic ...
... plotted as the point (65 inches, 22 students) on the graph in Figure 25.1b. This type of analysis can be conducted on any group of individuals who vary with regard to a quantitative trait. The line in the frequency distribution depicts a normal distribution, a distribution for a large sample in whic ...
Bicoid associates with the 5 -cap-bound complex of caudal mRNA
... Translational control plays a key role in many biological processes including pattern formation during early Drosophila embryogenesis. In this process, the anterior determinant Bicoid (BCD) acts not only as a transcriptional activator of segmentation genes but also causes specific translational repr ...
... Translational control plays a key role in many biological processes including pattern formation during early Drosophila embryogenesis. In this process, the anterior determinant Bicoid (BCD) acts not only as a transcriptional activator of segmentation genes but also causes specific translational repr ...
Left-right axis asymmetry determining human Cryptic gene is
... the prospective right side of the organism and emphasizes the need to identify the very initial events and genes that are regulated by Snail leading to asymmetric positioning of the organs. As part of the Nodal signalling, the EGF-CFC family [comprising of Cripto, Frl1 and Cryptic (CFC1)], is emergi ...
... the prospective right side of the organism and emphasizes the need to identify the very initial events and genes that are regulated by Snail leading to asymmetric positioning of the organs. As part of the Nodal signalling, the EGF-CFC family [comprising of Cripto, Frl1 and Cryptic (CFC1)], is emergi ...
1 Tall - (canvas.brown.edu).
... 1) Traits are inherited as genes, invisible, indivisible, characters passed from one generation to the next. 2) Some genes are dominant over others. 3) During gamete formation, the two copies of a gene are segregated from each other 4) The segregation of genes for different characters is independent ...
... 1) Traits are inherited as genes, invisible, indivisible, characters passed from one generation to the next. 2) Some genes are dominant over others. 3) During gamete formation, the two copies of a gene are segregated from each other 4) The segregation of genes for different characters is independent ...
Gene expression profiling
In the field of molecular biology, gene expression profiling is the measurement of the activity (the expression) of thousands of genes at once, to create a global picture of cellular function. These profiles can, for example, distinguish between cells that are actively dividing, or show how the cells react to a particular treatment. Many experiments of this sort measure an entire genome simultaneously, that is, every gene present in a particular cell.DNA microarray technology measures the relative activity of previously identified target genes. Sequence based techniques, like serial analysis of gene expression (SAGE, SuperSAGE) are also used for gene expression profiling. SuperSAGE is especially accurate and can measure any active gene, not just a predefined set. The advent of next-generation sequencing has made sequence based expression analysis an increasingly popular, ""digital"" alternative to microarrays called RNA-Seq. However, microarrays are far more common, accounting for 17,000 PubMed articles by 2006.