Probability and Punnet Squares
... A Punnett square is a simple diagram that can be used to predict the outcome of a genetic cross. Punnett squares use probability to predict possible genotypes and phenotypes. ...
... A Punnett square is a simple diagram that can be used to predict the outcome of a genetic cross. Punnett squares use probability to predict possible genotypes and phenotypes. ...
ABC / abc x abc / abc ABC abc abc ABc abC AbC aBc aBC Abc
... alleles in the middle can experience a double crossover, C must sit in the middle. The gene order is A - C – B (or B – C – A, same difference!) While you’re at it, ASSIGN the in-between classes the label of “SINGLE CROSSOVER” progeny (see table below). ...
... alleles in the middle can experience a double crossover, C must sit in the middle. The gene order is A - C – B (or B – C – A, same difference!) While you’re at it, ASSIGN the in-between classes the label of “SINGLE CROSSOVER” progeny (see table below). ...
Drug Development Slides - Genomics, Bioinformatics & Medicine
... Look for proteins or mRNA expressed (or not) in a disease. Comparative gene expression assays, Comparative proteomic profiles. Look for genes and gene modifications associated with a disease. Look for proteins or protein modifications associated with a disease. Look for metabolic pathways essential ...
... Look for proteins or mRNA expressed (or not) in a disease. Comparative gene expression assays, Comparative proteomic profiles. Look for genes and gene modifications associated with a disease. Look for proteins or protein modifications associated with a disease. Look for metabolic pathways essential ...
Full Text - Archives of Pediatric Infectious Diseases
... Some bacteria carry a gene (DNA code) named NDM-1, which stands for New Delhi metallo-beta-lactamase-1. NDM-1 producing bacteria are resistant to nearly all antibiotics, including carbapenem antibiotics which are also known as antibiotics of the last resort. Because, NDM-1 gene makes the bacterium p ...
... Some bacteria carry a gene (DNA code) named NDM-1, which stands for New Delhi metallo-beta-lactamase-1. NDM-1 producing bacteria are resistant to nearly all antibiotics, including carbapenem antibiotics which are also known as antibiotics of the last resort. Because, NDM-1 gene makes the bacterium p ...
Innovative Database Models and Advanced Tools in Bioinformatics
... • We have developed and tested a program that considers an ordered set of motifs (or sequence attributes) and searches based on a context of ...
... • We have developed and tested a program that considers an ordered set of motifs (or sequence attributes) and searches based on a context of ...
FEMS Microbiology Letters
... plasmid than with the chrA gene alone (Fig. 1a). This increased chromate resistance conferred by the complete operon was more pronounced under low-sulfate growth conditions (0.05 mM sulfate; data not shown). Because the chrAC genes conferred a resistance level similar to that of chrA alone (data not ...
... plasmid than with the chrA gene alone (Fig. 1a). This increased chromate resistance conferred by the complete operon was more pronounced under low-sulfate growth conditions (0.05 mM sulfate; data not shown). Because the chrAC genes conferred a resistance level similar to that of chrA alone (data not ...
trans - bioRxiv
... these effects in downstream analyses did not change our conclusions, but we nonetheless excluded these ...
... these effects in downstream analyses did not change our conclusions, but we nonetheless excluded these ...
Extending the Loop Design for Microarray Experiments
... incomplete block designs to 2-channel microarrays. The loop design does not use reference samples, as a result of which only half the arrays are required to attain the same sample size as the reference design. Each loop includes 2 replicates of each treatment. Kerr and Churchill did not discuss how ...
... incomplete block designs to 2-channel microarrays. The loop design does not use reference samples, as a result of which only half the arrays are required to attain the same sample size as the reference design. Each loop includes 2 replicates of each treatment. Kerr and Churchill did not discuss how ...
MicroRNA Analysis
... of an miRNA, i.e. in which host gene it is encoded, its expression in different tissues and its known or proposed function, its potential target genes including Gene Ontology annotation, as well as miRNA families and proteins known to be involved in miRNA processing. ...
... of an miRNA, i.e. in which host gene it is encoded, its expression in different tissues and its known or proposed function, its potential target genes including Gene Ontology annotation, as well as miRNA families and proteins known to be involved in miRNA processing. ...
Genome engineering of mammalian haploid embryonic stem cells
... (NGG) and the 12 bp seed sequence at the 30 end of the sgRNA (Jinek et al., 2012). The importance of the remaining bases is less well understood and may depend on the binding strength of the matching sgRNA or the inherent tolerance of Cas9 itself. Therefore, we selected a 23-mer sequence (N21GG) fro ...
... (NGG) and the 12 bp seed sequence at the 30 end of the sgRNA (Jinek et al., 2012). The importance of the remaining bases is less well understood and may depend on the binding strength of the matching sgRNA or the inherent tolerance of Cas9 itself. Therefore, we selected a 23-mer sequence (N21GG) fro ...
Models of Selection, Isolation, and Gene Flow in Speciation
... and their inference from genetic data— have been recently and extensively reviewed (Lawton-Rauh, 2008; Nosil et al., 2009; Bird et al., 2012; Crisci et al., 2012; Feder et al., 2012; Nosil and Feder, 2012, 2013; Faria et al., 2014). In this essay I focus on two specific methods, one for modeling sel ...
... and their inference from genetic data— have been recently and extensively reviewed (Lawton-Rauh, 2008; Nosil et al., 2009; Bird et al., 2012; Crisci et al., 2012; Feder et al., 2012; Nosil and Feder, 2012, 2013; Faria et al., 2014). In this essay I focus on two specific methods, one for modeling sel ...
Bacterial disease resistance of transgenic hybrid poplar expressing
... sich and Hahlbrock 1998, Dixon 2001 for reviews). One of these reactions is based on the specific expression of genes encoding small peptides with antimicrobial activities. Recently, this non-specific defense and protection mechanism has been studied in detail. Many antimicrobial genes have been iso ...
... sich and Hahlbrock 1998, Dixon 2001 for reviews). One of these reactions is based on the specific expression of genes encoding small peptides with antimicrobial activities. Recently, this non-specific defense and protection mechanism has been studied in detail. Many antimicrobial genes have been iso ...
Genetic Traits
... cells called deoxyribonucleic acid (DNA). Therefore, the DNA that an individual inherits determines his or her characteristics. Within cells, molecules of DNA form structures called chromosomes. The instructions for specific traits are contained on sections of chromosomes called genes. Offspring rec ...
... cells called deoxyribonucleic acid (DNA). Therefore, the DNA that an individual inherits determines his or her characteristics. Within cells, molecules of DNA form structures called chromosomes. The instructions for specific traits are contained on sections of chromosomes called genes. Offspring rec ...
BMC Microbiology
... Indicated are peak 1 (9.2 min; 8,11-diHOD), peak 2 (10,8 min; 5,8-diHOD), peak 2* (10.9 min, λmax 218 nm; lactonized 5,8diHOD), and peak 3 (15.1 min; 8-HOD), the major fatty acid metabolites. RP-HPLC analysis and purification of the fatty acid products were carried out on a Cosmosil 5C18-AR (5 μm; 2 ...
... Indicated are peak 1 (9.2 min; 8,11-diHOD), peak 2 (10,8 min; 5,8-diHOD), peak 2* (10.9 min, λmax 218 nm; lactonized 5,8diHOD), and peak 3 (15.1 min; 8-HOD), the major fatty acid metabolites. RP-HPLC analysis and purification of the fatty acid products were carried out on a Cosmosil 5C18-AR (5 μm; 2 ...
Mouse models of obesity
... and agouti protein may regulate lipogenesis in an additive manner via calcium signalling. Agouti expression in skin has little effect on the obesity phenotype, and agouti protein does not circulate as an endocrine factor, because transgenic mice overexpressing agouti in skin do not become obese.[18] ...
... and agouti protein may regulate lipogenesis in an additive manner via calcium signalling. Agouti expression in skin has little effect on the obesity phenotype, and agouti protein does not circulate as an endocrine factor, because transgenic mice overexpressing agouti in skin do not become obese.[18] ...
Phenotypic characterization of three temperature
... Ceils and viruses. Wild-type VV WR and ts mutants C46 (Condit & Motyczka, 1981; Condit et al., 1983) and E93 (Ensinger, 1982) have been described. The parent of mutant $4 was isolated by Dr Richard C. Condit as a double mutant, that is both ts and resistant to the Sadenosylhomocysteine analogue sine ...
... Ceils and viruses. Wild-type VV WR and ts mutants C46 (Condit & Motyczka, 1981; Condit et al., 1983) and E93 (Ensinger, 1982) have been described. The parent of mutant $4 was isolated by Dr Richard C. Condit as a double mutant, that is both ts and resistant to the Sadenosylhomocysteine analogue sine ...
7.1 Chromosomes and Phenotype
... 7.1 Chromosomes and Phenotype • Gene expression is often related to whether a gene is located on an autosome or a sex chromosome – Sex chromosomes: determine gender – Autosomes: all other chromosomes- no relation to gender • All genes that Mendel studied were autosomes • Most traits are the result ...
... 7.1 Chromosomes and Phenotype • Gene expression is often related to whether a gene is located on an autosome or a sex chromosome – Sex chromosomes: determine gender – Autosomes: all other chromosomes- no relation to gender • All genes that Mendel studied were autosomes • Most traits are the result ...
Gene Section YAP1 (Yes-associated protein 1, 65kDa) Atlas of Genetics and Cytogenetics
... kinase c-Yes, which is a member of the Src family (Sudol, 1994). In fact, Yap is able to interact with the SH3 domain of c-Yes (and also c-Src), through a stretch of proline residues; this proline-rich region is able to interact with SH3 domains of many other proteins. In addition Yap contains anoth ...
... kinase c-Yes, which is a member of the Src family (Sudol, 1994). In fact, Yap is able to interact with the SH3 domain of c-Yes (and also c-Src), through a stretch of proline residues; this proline-rich region is able to interact with SH3 domains of many other proteins. In addition Yap contains anoth ...
Application of rpoB sequence similarity analysis, REP‐PCR and
... (2005) during comparison of 16S rRNA and recN deriving phylogenies because of the mutational saturation of the later gene. Although bootstrap values were lower for the rpoB tree, both phylogenetic analyses shared satisfactory bootstrap support. In terms of the 16S rRNA gene sequences of Geobacillus ...
... (2005) during comparison of 16S rRNA and recN deriving phylogenies because of the mutational saturation of the later gene. Although bootstrap values were lower for the rpoB tree, both phylogenetic analyses shared satisfactory bootstrap support. In terms of the 16S rRNA gene sequences of Geobacillus ...
Finding Eukaryotic Open reading frames.
... • The DNA sequence of Introns is like any non coding region of the DNA in that the bases are just bases and should not be read as elements of a “codon” so in an intron sequence: – ATG does not represent a start codons – TAA/TAG/TGA do not represent stop codons. ...
... • The DNA sequence of Introns is like any non coding region of the DNA in that the bases are just bases and should not be read as elements of a “codon” so in an intron sequence: – ATG does not represent a start codons – TAA/TAG/TGA do not represent stop codons. ...
Genes involved in ovulation rate and litter size in sheep
... since selection of breeding candidates is complicated. It is important to study genes associated with fertility so that breeding can include genotypic information from animals. This will increase the genetic improvements in reproduction traits since it will be easier to collect data and information ...
... since selection of breeding candidates is complicated. It is important to study genes associated with fertility so that breeding can include genotypic information from animals. This will increase the genetic improvements in reproduction traits since it will be easier to collect data and information ...
PowerPoint Presentation - The pace of Dr. Taub`s lectures have been
... • D: Recombination takes place at a high rate between two alleles ...
... • D: Recombination takes place at a high rate between two alleles ...
Category 2000
... Peroxisome proliferator-activated receptor coactivator 1 (PPARGC1A) is a versatile coactivator with many functions, but is primarily involved in fat and energy metabolism. Therefore, it is a very interesting candidate gene for meat quality, which is one of the most important criteria in pig selectio ...
... Peroxisome proliferator-activated receptor coactivator 1 (PPARGC1A) is a versatile coactivator with many functions, but is primarily involved in fat and energy metabolism. Therefore, it is a very interesting candidate gene for meat quality, which is one of the most important criteria in pig selectio ...
Gene expression profiling
In the field of molecular biology, gene expression profiling is the measurement of the activity (the expression) of thousands of genes at once, to create a global picture of cellular function. These profiles can, for example, distinguish between cells that are actively dividing, or show how the cells react to a particular treatment. Many experiments of this sort measure an entire genome simultaneously, that is, every gene present in a particular cell.DNA microarray technology measures the relative activity of previously identified target genes. Sequence based techniques, like serial analysis of gene expression (SAGE, SuperSAGE) are also used for gene expression profiling. SuperSAGE is especially accurate and can measure any active gene, not just a predefined set. The advent of next-generation sequencing has made sequence based expression analysis an increasingly popular, ""digital"" alternative to microarrays called RNA-Seq. However, microarrays are far more common, accounting for 17,000 PubMed articles by 2006.