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The Copines, a Novel Class of C2 Domain-containing, Calcium
The Copines, a Novel Class of C2 Domain-containing, Calcium

... domains, with the exception of generally short amino-terminal domains that provide additional regulation of the annexin or binding sites for other proteins. In contrast, the C2 domain, for which the structure is also known (3), is a motif that is attached to a diverse array of enzymatic or protein i ...
Domain structure and sequence similarities in cartilage proteoglycan
Domain structure and sequence similarities in cartilage proteoglycan

... protein, taken together for all four species determined, show a similarity of about 48%, while that of the B’ loops is 35%. For link protein alone, comparison among different species shows the amino acid sequence similarity between these two loops to be almost 60%. The G1 domain has been shown to bi ...
Amino Groups - Robert Mecham
Amino Groups - Robert Mecham

... The high concentration of sodium acetate serves as a buffer and also helps to direct the selectivity of modification to amino groups (see Section 5-1). Acetylation in the absence of high sodium acetate concentrations is sometimes desirable, in which case the same general procedure can be employed su ...
amino groups - Robert Mecham
amino groups - Robert Mecham

... The high concentration of sodium acetate serves as a buffer and also helps to direct the selectivity of modification to amino groups (see Section 5-1). Acetylation in the absence of high sodium acetate concentrations is sometimes desirable, in which case the same general procedure can be employed su ...
Microbial Cell Surfaces and Secretion Systems
Microbial Cell Surfaces and Secretion Systems

... metabolism. The T4SS is very similar to the conjugation apparatus, which translocates DNA with associated proteins into other bacterial or eukaryotic cells. The T3SS contains a basal body resembling the structure that anchors the flagellum in the cell envelope and functions as the translocon for fla ...
Intelligent Systems for Molecular Biology ISMB, Michigan 2005
Intelligent Systems for Molecular Biology ISMB, Michigan 2005

... Simplified view of complex interaction networks, e.g., by identifying recurrent patterns across multiple networks to discover biologically meaningful modules. ...
Robert Jones
Robert Jones

... Heterorhabditid nematodes. MNS is small protein highly secreted from the bacterial cell, and appears to clump nematodes together. Knock-out mutants also implicate the protein in biofilm formation and the attachment of cells to surfaces, as studied by Transmission electron microscopy, surface plasmon ...
Chapter 3 - McGraw Hill Higher Education
Chapter 3 - McGraw Hill Higher Education

... • With 20 different amino acids, there is a tremendous variety of protein primary structures that can be made. ...
Membranes
Membranes

... Membranous carriers: vesicles Coated by proteins: COPII, COPI (coat proteins) ...
Detergent-resistant membranes and the protein
Detergent-resistant membranes and the protein

... impressive: the ratios of isotopes from cells labeled with either leucine or trideuterated leucine were measured by mass spectrometry and used to group TX-DRM proteins into three categories on the basis of the sensitivity of their presence in the TX-DRMs to acute cholesterol depletion: raft proteins ...
Lecture 5 Cytoplasm, organelles Pinar Tulay_4
Lecture 5 Cytoplasm, organelles Pinar Tulay_4

... subunit which reads the RNA – the large subunit which joins amino acids to form a polypeptide chain ...
PHD domains and E3 ubiquitin ligases: viruses make the connection
PHD domains and E3 ubiquitin ligases: viruses make the connection

... domains to RING fingers hint that many other PHD proteins might share this activity. The plant homeodomain (PHD) motif is a sequence encoding a specialized form of zinc finger that was first recognized in an Arabidopsis homeobox protein by Schindler et al. [1] nearly a decade ago. Since that time, r ...
Pharos university Faculty of Allied Medical SCIENCE Biochemistry 1
Pharos university Faculty of Allied Medical SCIENCE Biochemistry 1

... be synthesized by the human body  The other 9 amino acids must be acquired from food sources. These amino acids are known as essential amino acids ...
the RbDe web service - Oxford Academic
the RbDe web service - Oxford Academic

... Residue-based diagrams are a special kind of representation of a protein where residues are laid out on a page with conventions that highlight the relations between a given sequence, secondary structure information and residue-level annotations. For transmembrane proteins, where the representation i ...
membranes (Ms. Shivani Bhagwat)
membranes (Ms. Shivani Bhagwat)

... One remarkable feature of all biological membranes is their flexibility—their ability to change shape without losing their integrity and becoming leaky. The basis for this property is the non covalent interactions among lipids in the bilayer. At temperatures in the physiological range (about 20 to 4 ...
protein expression (pdf, en, 2701 KB, 4/8/10)
protein expression (pdf, en, 2701 KB, 4/8/10)

... It is achieved using E. coli auxotrophic strains which are grown in the presence of selected labeled aminoacids or using more sophisticated techniques such as cellcell-free. The latter approach allows to simplify problems due to protein size. It is possible to focus on specific regions of the protei ...
ppt
ppt

... A Pseudo-Rotational Online Service and Interactive Tool Proteins can be grouped on the basis of their sequences, into a limited number of families. Some regions have been better conserved than others during evolution. These regions are generally important for the function of a protein and/or the mai ...
Where Do Vegetarian Athletes Get Their Protein?
Where Do Vegetarian Athletes Get Their Protein?

... of protein are deficient in one or more of the essential ...
Proteins_and_Eggs_-_T_or_F_Answer_Key
Proteins_and_Eggs_-_T_or_F_Answer_Key

... Directions: Decide whether the statements below are true or false. Then place a T for true or F for false next to the number. F 1. When you shake oil, vinegar, water, and seasoning, you have made a permanent emulsion. T 2. As you beat egg white into a foam, the cells become: (1) smaller, (2) more nu ...
Signal Transduction Pathways • Signal Transduction
Signal Transduction Pathways • Signal Transduction

... •Conformational changes expose hydrophobic residues •Newly exposed surfaces can bind other proteins, eg, CaM kinase I, and stimulating them  phosphorylate proteins ...
Animal Dicer and plant Dicer-like proteins
Animal Dicer and plant Dicer-like proteins

... possess two and sometimes more Dicer genes. Even more Dicer homologs, showing higher structural and functional diversity, are found in plants. Arabidopsis thaliana possesses four DCL proteins (DCL1-4), which represent four distinct Dicer groups typically found in plants. All four groups are estimate ...
第五章DNA与基因表达调控1
第五章DNA与基因表达调控1

... (mCpG attract methylation sensitive DNA binding proteins (MeCP1), which in turn recruit Histone deacetylation enzyme (Sin3 complex) histone deacetylation gene inactivated • 5mC : Cytosines are methylated after replication • the percentage of 5mC varies from species to species.(3% for mammalian DNA ...
workshops
workshops

... Prosite http://www.expasy.ch/prosite Prints http://www.bioninf.man.ac.uk/dbbrowser/PRINTS/ Pfam http://www.sanger.ac.uk/Software/Pfam/index.shtml SMART http://smart.embl-heidelberg.de/ ProDom http://www.toulouse.inra.fr/prodom.html ...
WORKSHOPS
WORKSHOPS

... Prosite http://www.expasy.ch/prosite Prints http://www.bioninf.man.ac.uk/dbbrowser/PRINTS/ Pfam http://www.sanger.ac.uk/Software/Pfam/index.shtml SMART http://smart.embl-heidelberg.de/ ProDom http://www.toulouse.inra.fr/prodom.html ...
Dr. Chwan-Deng (David) Hsiao[2], 強伍翎(u891602)
Dr. Chwan-Deng (David) Hsiao[2], 強伍翎(u891602)

... mixture of sample and precipitating agent is placed in vapor equilibration with a liquid reservoir of reagent. Typically it contains a lower reagent concentration than the reservoir. To achieve equilibrium, water vapor leaves the drop and eventually ends up in the reservoir. As water leaves the drop ...
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Intrinsically disordered proteins



An intrinsically disordered protein (IDP) is a protein that lacks a fixed or ordered three-dimensional structure. IDPs cover a spectrum of states from fully unstructured to partially structured and include random coils, (pre-)molten globules, and large multi-domain proteins connected by flexible linkers. They constitute one of the main types of protein (alongside globular, fibrous and membrane proteins).The discovery of IDPs has challenged the traditional protein structure paradigm, that protein function depends on a fixed three-dimensional structure. This dogma has been challenged over the last decades by increasing evidence from various branches of structural biology, suggesting that protein dynamics may be highly relevant for such systems. Despite their lack of stable structure, IDPs are a very large and functionally important class of proteins. In some cases, IDPs can adopt a fixed three-dimensional structure after binding to other macromolecules.
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