Towards an accurate identification of mosaic genes and partial
... transgenic DNA into human cell, antibiotic-resistant genes spreading to pathogenic bacteria, and disease-associated genes spreading and recombining to create new viruses and bacteria (4). Two models of HGT have been considered in the literature (5). First, and the most popular of them, is the tradit ...
... transgenic DNA into human cell, antibiotic-resistant genes spreading to pathogenic bacteria, and disease-associated genes spreading and recombining to create new viruses and bacteria (4). Two models of HGT have been considered in the literature (5). First, and the most popular of them, is the tradit ...
Direct Deletion Analysis in Two Duchenne Muscular Dystrophy
... repeats [(CA)16 and (TC)12], II-2 displayed 29 repeats [(CA)18 and (TC)11], the same as her father. The lack of the maternal allele that contained a total of 28 repeats was evident. If this allele had been present in the proband, then the double bands in the sequence would have been observed (Fig. 2 ...
... repeats [(CA)16 and (TC)12], II-2 displayed 29 repeats [(CA)18 and (TC)11], the same as her father. The lack of the maternal allele that contained a total of 28 repeats was evident. If this allele had been present in the proband, then the double bands in the sequence would have been observed (Fig. 2 ...
What are chromosomes?
... chromosome has broken off, turned upside down and reattached, therefore the genetic material is inverted. eg ...
... chromosome has broken off, turned upside down and reattached, therefore the genetic material is inverted. eg ...
Nematode genome evolution
... match each C. briggsae chromosome to the C. elegans chromosome(s) with which it shares common ancestry (Robert Waterston, Raymond Miller, Scott Baird and Asif Chinwalla, unpublished data). Sequencing of random regions of the Pristionchus pacificus and Brugia malayi genomes suggests that despite the ...
... match each C. briggsae chromosome to the C. elegans chromosome(s) with which it shares common ancestry (Robert Waterston, Raymond Miller, Scott Baird and Asif Chinwalla, unpublished data). Sequencing of random regions of the Pristionchus pacificus and Brugia malayi genomes suggests that despite the ...
Chromosomes
... the chromosome into a long (q) arm and a short (p) arm • Acrocentric- located near one end of the chromosome; divides the chromosome into a long (q) arm and a chort (p) arm • Telocentric- located at the end; humans do not have these ...
... the chromosome into a long (q) arm and a short (p) arm • Acrocentric- located near one end of the chromosome; divides the chromosome into a long (q) arm and a chort (p) arm • Telocentric- located at the end; humans do not have these ...
Matthew Kwong - GEP Community Server
... regions that separate the exons. Donor sites have a characteristic GT nucleotide sequence and acceptor sites have a characteristic AG sequence. The criteria is that the corresonding donor and acceptor sites have a phase that add up to three or zero. This is the way that the amino acid sequences are ...
... regions that separate the exons. Donor sites have a characteristic GT nucleotide sequence and acceptor sites have a characteristic AG sequence. The criteria is that the corresonding donor and acceptor sites have a phase that add up to three or zero. This is the way that the amino acid sequences are ...
A program for annotating and predicting the effects of single
... genome sequences. Once a genome is sequenced, the SnpEff program can be used to annotate and classify genetic polymorphisms based on their effects on annotated genes, such as synonymous or non-synonymous SNPs, start codon gains or losses, stop codon gains or losses; or based on their genomic locatio ...
... genome sequences. Once a genome is sequenced, the SnpEff program can be used to annotate and classify genetic polymorphisms based on their effects on annotated genes, such as synonymous or non-synonymous SNPs, start codon gains or losses, stop codon gains or losses; or based on their genomic locatio ...
Navigating the HapMap - Oxford Academic
... million single nucleotide polymorphisms (SNPs) in four human population samples [1*]. This comprehensive sampling of genetic variation may form the basis of many of the phenotypic differences seen in humans and is clearly an issue that any sequence based analysis of the genome needs to take into acc ...
... million single nucleotide polymorphisms (SNPs) in four human population samples [1*]. This comprehensive sampling of genetic variation may form the basis of many of the phenotypic differences seen in humans and is clearly an issue that any sequence based analysis of the genome needs to take into acc ...
Evolution of a pseudo-control region in the mitochondrial genome of
... might stay for longer and occasionally interbreed with B. oreophilus cannot be excluded. In the present study we tried to elucidate the unresolved phylogeny of B. buteo and its relatives in a molecular approach. Analyses of mitochondrial (mt) sequences of the genus Buteo have not yet been extensivel ...
... might stay for longer and occasionally interbreed with B. oreophilus cannot be excluded. In the present study we tried to elucidate the unresolved phylogeny of B. buteo and its relatives in a molecular approach. Analyses of mitochondrial (mt) sequences of the genus Buteo have not yet been extensivel ...
Divergent Evolutionary and Expression Patterns between Lineage
... that lineage specific new genes indeed exist, have originated in multiple organisms and play important roles in the evolution of genomes and organisms [1–3]. Many recent studies have also shown that new genes contribute to evolutionary changes and phenotypic adaptation in recently diverged lineages ...
... that lineage specific new genes indeed exist, have originated in multiple organisms and play important roles in the evolution of genomes and organisms [1–3]. Many recent studies have also shown that new genes contribute to evolutionary changes and phenotypic adaptation in recently diverged lineages ...
Article The Landscape of Realized Homologous
... Recombination enhances the adaptive potential of organisms by allowing genetic variants to be tested on multiple genomic backgrounds. Its distribution in the genome can provide insight into the evolutionary forces that underlie traits, such as the emergence of pathogenicity. Here, we examined landsc ...
... Recombination enhances the adaptive potential of organisms by allowing genetic variants to be tested on multiple genomic backgrounds. Its distribution in the genome can provide insight into the evolutionary forces that underlie traits, such as the emergence of pathogenicity. Here, we examined landsc ...
Patterns of prokaryotic lateral gene transfers affecting parasitic
... Full list of author information is available at the end of the article ...
... Full list of author information is available at the end of the article ...
Patterns of prokaryotic lateral gene transfers affecting parasitic
... Full list of author information is available at the end of the article ...
... Full list of author information is available at the end of the article ...
REVIEW ARTICLE Gene cassettes
... 1991). Generally, each gene cassette possesses a unique 59base element, and both the length and sequence of 59-base elements can vary considerably (see Table 1 and Fig. 4). However, despite this heterogeneity, all 59-base elements share several features. They are bounded by an inverse core site (RYY ...
... 1991). Generally, each gene cassette possesses a unique 59base element, and both the length and sequence of 59-base elements can vary considerably (see Table 1 and Fig. 4). However, despite this heterogeneity, all 59-base elements share several features. They are bounded by an inverse core site (RYY ...
1. Introduction
... 1.1. Chromosomes, karyotypes and theirs variations 1.1.1. Historical background: the chromosome discovery In 1888, Heinrich von Waldeyer (1888) introduced the term “chromosome”, from the Greek chroma for colored and soma for body, to designate the filaments present in the cell nucleus and previously ...
... 1.1. Chromosomes, karyotypes and theirs variations 1.1.1. Historical background: the chromosome discovery In 1888, Heinrich von Waldeyer (1888) introduced the term “chromosome”, from the Greek chroma for colored and soma for body, to designate the filaments present in the cell nucleus and previously ...
The Genome of a Mongolian Individual Reveals
... Mongolians have played a significant role in modern human evolution, especially after the rise of Genghis Khan (1162[?]–1227). Although the social cultural impacts of Genghis Khan and the Mongolian population have been well documented, explorations of their genome structure and genetic imprints on o ...
... Mongolians have played a significant role in modern human evolution, especially after the rise of Genghis Khan (1162[?]–1227). Although the social cultural impacts of Genghis Khan and the Mongolian population have been well documented, explorations of their genome structure and genetic imprints on o ...
Expressed Sequence Tag (EST)
... - They represent a big part of the mammalian genome - They are found in a number of genomes (plants, …) - They induce errors in clustering and assembling - They should be MASKED, not deleted, to avoid false sequence assembling (also interesting for evolutionary studies. SSRs important for mapping of ...
... - They represent a big part of the mammalian genome - They are found in a number of genomes (plants, …) - They induce errors in clustering and assembling - They should be MASKED, not deleted, to avoid false sequence assembling (also interesting for evolutionary studies. SSRs important for mapping of ...
DNA Sequencing (cont.) - A computational tour of the human genome
... • Remove transitively inferable overlaps If read r overlaps to the right reads r1, r2, and r1 overlaps r2, then (r, r2) can be inferred by (r, r1) and (r1, r2) ...
... • Remove transitively inferable overlaps If read r overlaps to the right reads r1, r2, and r1 overlaps r2, then (r, r2) can be inferred by (r, r1) and (r1, r2) ...
BLSSpeller: exhaustive comparative discovery of
... collection of binding sites. The algorithm can be run in both alignment-free or alignment-based mode. In case of alignment-free discovery, the conservation of a motif is scored irrespective of its orientation or position within a promoter sequence. This relaxed definition of conservation was previou ...
... collection of binding sites. The algorithm can be run in both alignment-free or alignment-based mode. In case of alignment-free discovery, the conservation of a motif is scored irrespective of its orientation or position within a promoter sequence. This relaxed definition of conservation was previou ...
Open the publication - UEF Electronic Publications
... Importance of molecular biology has been increasing in the last decades. It is now known that all organisms contain huge amount of encoded genetic information in their cells and that genetics is a key element for understanding why all of us differ from each other. Characteristics of an organism, kno ...
... Importance of molecular biology has been increasing in the last decades. It is now known that all organisms contain huge amount of encoded genetic information in their cells and that genetics is a key element for understanding why all of us differ from each other. Characteristics of an organism, kno ...
Simplified global gene expression profiling
... approaches such as RPKM (reads per kilobase of transcript per million reads mapped), it is unnecessary to normalize data obtained with the Ion AmpliSeq Transcriptome Human Gene Expression Kit to account for transcript length bias. Ion AmpliSeq RNA normalization for a given sample is automatically ca ...
... approaches such as RPKM (reads per kilobase of transcript per million reads mapped), it is unnecessary to normalize data obtained with the Ion AmpliSeq Transcriptome Human Gene Expression Kit to account for transcript length bias. Ion AmpliSeq RNA normalization for a given sample is automatically ca ...
Document
... Right click on tracks NOT shown below and hide them. Right click on the RepeatMasker track and click full. It is dense by default. Adjust the zoom until you get a view you are comfortable with. ...
... Right click on tracks NOT shown below and hide them. Right click on the RepeatMasker track and click full. It is dense by default. Adjust the zoom until you get a view you are comfortable with. ...
Polymorphism of FecB Gene in Nine Sheep Breeds or Strains and
... other factors. Muslant et al. [1] and Wilson et al. [3] reported that FecB is a major gene inherited as a single autosomal locus, which regulates ovulation rate of Booroola sheep. Using DNA testing we also found that the FecB gene followed Mendelian segregation patterns in Hu sheep and crossbreds. D ...
... other factors. Muslant et al. [1] and Wilson et al. [3] reported that FecB is a major gene inherited as a single autosomal locus, which regulates ovulation rate of Booroola sheep. Using DNA testing we also found that the FecB gene followed Mendelian segregation patterns in Hu sheep and crossbreds. D ...
Copy-number variation
Copy-number variations (CNVs)—a form of structural variation—are alterations of the DNA of a genome that results in the cell having an abnormal or, for certain genes, a normal variation in the number of copies of one or more sections of the DNA. CNVs correspond to relatively large regions of the genome that have been deleted (fewer than the normal number) or duplicated (more than the normal number) on certain chromosomes. For example, the chromosome that normally has sections in order as A-B-C-D might instead have sections A-B-C-C-D (a duplication of ""C"") or A-B-D (a deletion of ""C"").This variation accounts for roughly 13% of human genomic DNA and each variation may range from about one kilobase (1,000 nucleotide bases) to several megabases in size. CNVs contrast with single-nucleotide polymorphisms (SNPs), which affect only one single nucleotide base.