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Cross-mining Binary and Numerical Attributes
Cross-mining Binary and Numerical Attributes

... together [1]. After several years of research many efficient algorithms have been developed to mine frequent itemsets, e.g. Apriori [2] or FP-growth [6] among others. Other variations of the problem are mining frequent closed sets [18] or mining maximal frequent sets [3]. In all cases, finding such ...
X - Bioinformatics.ca
X - Bioinformatics.ca

... Where a is the average dissimilarity to all the points in the cluster and b is the minimum distance to any of the objects in the other clusters. Intuitively, objects with large S are well-clustered while the ones with small S tend to lie between clusters. How many clusters: Perform clustering for a ...
A powerful test of independent assortment that determines
A powerful test of independent assortment that determines

... behavior of all three methods for 10% and 1% type 1 error rates is unchanged (data not shown). With the CMD scenario, where the autoregressive model is correct because IBD information is known, we see that there is good agreement (Table 1) between our proposed PB approach and DAR (the tail probabili ...
A set reduction and pattern matching problem motivated by Allele
A set reduction and pattern matching problem motivated by Allele

Langfelder-NetworkDay-clustering
Langfelder-NetworkDay-clustering

Multivariate Stream Data Classification Using Simple Text Classifiers
Multivariate Stream Data Classification Using Simple Text Classifiers

... predict the labels for the windows. For the classification step, we evaluated both supervised and unsupervised methods. For supervised, we tested Naïve Bayes Model and SVM, and for unsupervised, we tested Jaccard, TFIDF, Jaro and JaroWinkler. We identify the contributions of our work as follows: 1. ...
NOCARDIA sp. INDONESIAN VOLCANIC SOIL DESAK GEDE SRI ANDAYANI , ELIN YULINAH SUKANDAR
NOCARDIA sp. INDONESIAN VOLCANIC SOIL DESAK GEDE SRI ANDAYANI , ELIN YULINAH SUKANDAR

PPT
PPT

mining on car database employing learning and clustering algorithms
mining on car database employing learning and clustering algorithms

... probabilistic classifier with strong (naive) independent assumptions. It can be also more descriptively terms ad “independent feature classifier”. In simple terms, a naive Bayes classifier assumes that the presence (or absence) of a particular feature of a class is not related to the presence (or ab ...
GraphVisualization2 - Ohio State Computer Science and
GraphVisualization2 - Ohio State Computer Science and

... Measure abstract feature Give ranking Edge metrics also possible Structure-based or content-based Examples ...
Endosymbiosis Theory
Endosymbiosis Theory

Best description
Best description

... As we have stated, the MT-DFS algorithm typically spends a large fraction of time backtracking to prove a candidate point is the true NN. Based on this observation, a quick revision would be to descends the metric tree using the decision boundaries at each level without backtracking, and then output ...
1 Mathematical Population Genetics Introduction to the
1 Mathematical Population Genetics Introduction to the

... by other groups, but that subsistence pattern and presumably the demographic size of the population has also remained roughly constant for at least 8,000 years. Based on the current size of the population that was sampled, there are approximately 600 women of child bearing age in the traditional Nuu ...
Convergence Properties of the Degree Distribution of Some
Convergence Properties of the Degree Distribution of Some

... However, different criteria have been applied for convergence of the degree distribution of an RGG as the size of the network becomes large. Some authors, e.g. Barabási and Albert (1999) and Dorogovtsev and Mendes (2003) consider convergence, for all k, of the expected proportion of nodes of degree ...
Cepek -
Cepek -

... Selection – tournament selection ...
Rapid radiation and cryptic speciation in squat lobsters of the genus
Rapid radiation and cryptic speciation in squat lobsters of the genus

... Aside from their taxonomy, the phylogenetic affinities among the squat lobsters are poorly understood. The systematics of the group has not been fully resolved, and current taxonomic treatments divide genera into several large groups based on the number of male pleopods, general spinulation and the sh ...
10. Hidden Markov Models (HMM) for Speech Processing
10. Hidden Markov Models (HMM) for Speech Processing

... Given the observation sequence O = o1 o2 … oT, and a model λ, how do we choose a corresponding state sequence Q = q1 q2 … qT which is optimal in some meaningful sense (i.e., best “explains” the observations)? i.e. maximizes P(Q, O|λ) The forward algorithm provides the total probability through all p ...
Scoring Matrices CS795
Scoring Matrices CS795

... If two sequences are at a distance of k-PAM units this does not mean that they have a k% sequence difference ...
An algebra-based method for inferring gene regulatory networks
An algebra-based method for inferring gene regulatory networks

... systems biology. This includes the inference of both the network topology and its dynamics. While there are many algorithms available to infer the network topology from experimental data, less emphasis has been placed on methods that infer network dynamics. Furthermore, since the network inference p ...
LaTeX Article Template - customizing page format
LaTeX Article Template - customizing page format

Tunneling in Double Barriers
Tunneling in Double Barriers

Standard error
Standard error

... • Is the technique which defines experimental studies in humans (but not only in them), and enables the correct application of statistical tests of hypothesis in a frequentist framework (according to Ronal Fischer theory) • Randomization means assigning at random a patient (or a study unit) to one o ...
Lab7
Lab7

Lecture VII--InferenceInBayesianNet
Lecture VII--InferenceInBayesianNet

... Idea: fix evidence variables, sample only nonevidence variables, and weight each sample by the likelihood it accords the evidence ...
BLAST etc.
BLAST etc.

... initn: 1565 init1: 1515 opt: 1687 Z-score: 1158.1 expect(): 2.3e-58 66.2% identity in 875 nt overlap ...
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Computational phylogenetics

Computational phylogenetics is the application of computational algorithms, methods, and programs to phylogenetic analyses. The goal is to assemble a phylogenetic tree representing a hypothesis about the evolutionary ancestry of a set of genes, species, or other taxa. For example, these techniques have been used to explore the family tree of hominid species and the relationships between specific genes shared by many types of organisms. Traditional phylogenetics relies on morphological data obtained by measuring and quantifying the phenotypic properties of representative organisms, while the more recent field of molecular phylogenetics uses nucleotide sequences encoding genes or amino acid sequences encoding proteins as the basis for classification. Many forms of molecular phylogenetics are closely related to and make extensive use of sequence alignment in constructing and refining phylogenetic trees, which are used to classify the evolutionary relationships between homologous genes represented in the genomes of divergent species. The phylogenetic trees constructed by computational methods are unlikely to perfectly reproduce the evolutionary tree that represents the historical relationships between the species being analyzed. The historical species tree may also differ from the historical tree of an individual homologous gene shared by those species.Producing a phylogenetic tree requires a measure of homology among the characteristics shared by the taxa being compared. In morphological studies, this requires explicit decisions about which physical characteristics to measure and how to use them to encode distinct states corresponding to the input taxa. In molecular studies, a primary problem is in producing a multiple sequence alignment (MSA) between the genes or amino acid sequences of interest. Progressive sequence alignment methods produce a phylogenetic tree by necessity because they incorporate new sequences into the calculated alignment in order of genetic distance.
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