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Computer Storage of Sequences
Computer Storage of Sequences

... Sequence Formats Sequence is stored as ASCII text (i.e. sequence of A,G,C,T…) along with annotations. Different sequence formats recognized by different sequence analyzer programs. Sequence Format includes accessory information, gene names, source organism, investigator name, references, and the ac ...
Structure-Function studies of novel anticoagulants from snake venoms.
Structure-Function studies of novel anticoagulants from snake venoms.

... We have been involved in isolation and characterization of novel toxins from snake venoms and identified a number of new toxins that belong to known family of toxins, but with different biological properties. We have also identified a few new families of snake venom toxins. The new toxins include (a ...
Structural basis of ubiquitylation Andrew P VanDemark and
Structural basis of ubiquitylation Andrew P VanDemark and

Nucleic Acid and Protein Quantitation Methods
Nucleic Acid and Protein Quantitation Methods

... The color change of this assay is measured at 595 or 600 nm. The Bradford assay takes only 10 minutes but is TM sensitive to detergent which is often found in protein samples. Finally, the bicinchoninic acid (BCA ) method was ...
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документ

... Labeling of amino acid molecules with deuterium is becoming an essential part for various biochemical studies with ...
The intracellular cyanobacteria of Paulinella chromatophora
The intracellular cyanobacteria of Paulinella chromatophora

... timely and important question: should obligatory intracellular cyanobacteria in Paulinella be considered new organelles, or do plastids and mitochondria hold a unique stature in the history of endosymbiotic events? We argue that drawing a sharp distinction between these two organelles and all other ...
Amino Acids: Disposal of Nitrogen & Urea Cycle
Amino Acids: Disposal of Nitrogen & Urea Cycle

...  Each Aminotransaminases is specific for 1 pair of substrate but non-specific for the other pair Aminotransaminases are named after the specific amino group donor Major Aminotransaminases #Aminotransaminases family Conserve amino group of most of the amino acids into Glutamate #Alanine Aminotrans ...
Plastid-Targeting Peptides from the
Plastid-Targeting Peptides from the

Hendra Virus
Hendra Virus

... • The molecules in the fractions are then blown apart to allow for easier electrophoresis, and are then run through a page process. ...
Self Menu Template (Men) - Lyn
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... The enzymes that act on these polymers to mobilize glucose for metabolism act only on their nonreducing ends. With extensive branching, there are more such ends for enzymatic attack than would be present in the same quantity of glucose stored in a linear polymer. In effect, branched polymers increas ...
1_sequence_file_form..
1_sequence_file_form..

... DNA or protein sequences. There are certain conventions applying to the way this sequence information is presented both in the conventional literature and in databases. Furthermore, the way in which sequence information is stored, retrieved and manipulated varies. That is to say there are different ...
Ab initio modelling tutorial (part II)
Ab initio modelling tutorial (part II)

... grouping – Normalized spatial deviation serves as a distance between heterogeneous models (e.g. bead models) – R.m.s.d. is employed for those with atom-to-atom correspondence (e.g. rigid body models) ...
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... Protein-protein interactions ...
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... a common ancestor (i.e. they are homologous). • … or, perhaps two proteins may be similar because they perform similar functions and are thereby constrained, even though they arose independently (functional convergence hypothesis, they are then called analogous). ...
polyribosomes
polyribosomes

... merely to specify the sequence of sub­ units in one chain. In most RNA mole­ cules the bases are stacked on top of one another more or less like a pile of pen­ nies. Since the bases have a thickness of 3.4 angstrom units, the messenger RNA strand for the hemoglobin polypeptide chains should have a m ...
E. coli - Semantic Scholar
E. coli - Semantic Scholar

... The E. coli malate dehydrogenase obtained by the procedure described herein was judged to be homogeneous by gel etectrophoresis in the presence and in the absence of SDS. At a load sample of ,el00 IJg, only a very minor band comprising less than 1% of the t o t a l protein was evident in addition to ...
AArest
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... 200 kDa tetramer monomer shown ...
Protein synthesis
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... • The peptidyl-tRNA moves from A site to the P site • The ribosome moves three nucleotides along the mRNA • This process requires EF-G (translocase) and GTP ...
The cloning and overexpression of E coli acyl carrier protein (ACP)
The cloning and overexpression of E coli acyl carrier protein (ACP)

... is essential for fatty acid synthesis. In bacteria [ l ] and plants [2] which use type I1 dissociable fatty acid synthetases, acyl chains are esterified to ACP through the 4'-phosphopantetheineprosthetic group, and ACP acts as a carrier during fatty acid synthesis. ACPs from bacteria and plants are ...
Whole body protein synthesis is an average of the synthesis rates
Whole body protein synthesis is an average of the synthesis rates

... above that of breakdown is of prime importance in skeletal muscle hypertrophy (1,2). It is this basis of understanding that we start this article off by looking into how feeding and exercise impacts fractional protein turnover. Years ago David Millward and Peter Bates identified that protein synthes ...
Protein synthesis
Protein synthesis

... • The peptidyl-tRNA moves from A site to the P site • The ribosome moves three nucleotides along the mRNA • This process requires EF-G (translocase) and GTP ...
Canine Osteosarcoma
Canine Osteosarcoma

... reaction of a metal ion from a soluble metal salt with amino acids, with a mole ratio of one mole of metal to one to three (preferably two) moles of amino acids to form coordinate covalent bonds. Amino acids molecular weight must be approximately 150 the chelate molecular weight must not exceed 800. ...
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Protein structure prediction



Protein structure prediction is the prediction of the three-dimensional structure of a protein from its amino acid sequence — that is, the prediction of its folding and its secondary, tertiary, and quaternary structure from its primary structure. Structure prediction is fundamentally different from the inverse problem of protein design. Protein structure prediction is one of the most important goals pursued by bioinformatics and theoretical chemistry; it is highly important in medicine (for example, in drug design) and biotechnology (for example, in the design of novel enzymes). Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). A continuous evaluation of protein structure prediction web servers is performed by the community project CAMEO3D.
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