• 100 times faster than dynamic programming. • Good for database
... S= score of High-scoring segment pair (HSP) ...
... S= score of High-scoring segment pair (HSP) ...
Slides
... each P in U: If current organism is outside taxonomic range of P AND at least one reaction in P lacks an enzyme, delete P from U If all reactions of P designated as key reactions have no enzyme, delete P from U ...
... each P in U: If current organism is outside taxonomic range of P AND at least one reaction in P lacks an enzyme, delete P from U If all reactions of P designated as key reactions have no enzyme, delete P from U ...
(lip) that - Repositories
... Exogenous lipoic acid may be taken up and incorporated into intracellular pools by a constitutive, energy-dependent active transport system which is similar to those for the amino acids glycine and proline. The membrane-bound transport proteins are capable of concentrating lipoic acid up to 100-fold ...
... Exogenous lipoic acid may be taken up and incorporated into intracellular pools by a constitutive, energy-dependent active transport system which is similar to those for the amino acids glycine and proline. The membrane-bound transport proteins are capable of concentrating lipoic acid up to 100-fold ...
Identification of four small molecular mass proteins in the silk of
... the relative positions of a few amino acid residues can be found close to the C-termini but major parts of the three seroins are dissimilar, indicating rapid gene diversification. The alignment pattern suggests that the seroin genes of B. mori originated by gene duplication followed by extensive del ...
... the relative positions of a few amino acid residues can be found close to the C-termini but major parts of the three seroins are dissimilar, indicating rapid gene diversification. The alignment pattern suggests that the seroin genes of B. mori originated by gene duplication followed by extensive del ...
Prediction for Essential Proteins with the Support Vector Machine
... protein essentiality is one of the studies on protein phenotype. When an essential protein is removed, it will cause the cell to lose its life or functionality because the function of the essential protein cannot be replaced by other proteins. Essential proteins can be identified by the experiment w ...
... protein essentiality is one of the studies on protein phenotype. When an essential protein is removed, it will cause the cell to lose its life or functionality because the function of the essential protein cannot be replaced by other proteins. Essential proteins can be identified by the experiment w ...
Design and Evolution of Artificial M13 Coat Proteins
... The design and evolution of ACP-7 depended on the use of a phagemid system in which all the wild-type phage coat proteins were supplied by a helper phage. As a consequence, non-functional coat proteins could be selected, provided they incorporated into the wild-type coat without signi®cantly impairi ...
... The design and evolution of ACP-7 depended on the use of a phagemid system in which all the wild-type phage coat proteins were supplied by a helper phage. As a consequence, non-functional coat proteins could be selected, provided they incorporated into the wild-type coat without signi®cantly impairi ...
Strain TrpC TrpB TrpA
... The double mutants FCO FC1 and FC1 FC40 both produce functional rII protein, but FCO FC88 is inactive. What does this indicate about the structure and function of the wild-type rII protein? ANSWER: The N-terminus and the C-terminus of the wild-type rII protein are essential for function. The region ...
... The double mutants FCO FC1 and FC1 FC40 both produce functional rII protein, but FCO FC88 is inactive. What does this indicate about the structure and function of the wild-type rII protein? ANSWER: The N-terminus and the C-terminus of the wild-type rII protein are essential for function. The region ...
Biocommunication in Plants
... unmasks the C-terminal helix-turn-helix DNA binding domain. The LuxR-AHL complex binds to palindromic sequences known as “lux boxes,” located in the promoter regions of quorum sensing–regulated genes. LuxR then recruits RNA polymerase, thus activating transcription of the targeted genes (Egland and ...
... unmasks the C-terminal helix-turn-helix DNA binding domain. The LuxR-AHL complex binds to palindromic sequences known as “lux boxes,” located in the promoter regions of quorum sensing–regulated genes. LuxR then recruits RNA polymerase, thus activating transcription of the targeted genes (Egland and ...
Evolution of beak size and shape
... Herrel, A., J. Podos, S. K. Huber, and A. P. Hendry. "Bite Performance and Morphology in a Population of Darwin's Finches: Implications for the Evolution of Beak Shape." Functional Ecology 19.1 (2005): 43-48. ...
... Herrel, A., J. Podos, S. K. Huber, and A. P. Hendry. "Bite Performance and Morphology in a Population of Darwin's Finches: Implications for the Evolution of Beak Shape." Functional Ecology 19.1 (2005): 43-48. ...
Compilation of tRNA sequences and sequences of
... later obtained. In such cases, additional references were added. This compilation is updated up to December 2002. The table contains the known tRNA sequences of all organisms including organelles. This is the continuation of the original tRNA compilation first published in 1978. (iii) Compilation of ...
... later obtained. In such cases, additional references were added. This compilation is updated up to December 2002. The table contains the known tRNA sequences of all organisms including organelles. This is the continuation of the original tRNA compilation first published in 1978. (iii) Compilation of ...
Nucleotide Sequence of the Gene Coding for the
... arefound,whileother regions show relatively poor conservation(30-35%). It is suggested that these strongly conserved regions are of special importance to the function of this enzyme, and the findings are discussed in the light of evolutionary theories on the origin of nif genes. ...
... arefound,whileother regions show relatively poor conservation(30-35%). It is suggested that these strongly conserved regions are of special importance to the function of this enzyme, and the findings are discussed in the light of evolutionary theories on the origin of nif genes. ...
origins debate intro
... to form ribonucleotides (a chemical composed of a ribose, a nucleobase, and a phosphate). In time, perhaps aided by mineral or clay catalysts, ribonucleotides assembled into long chain polymers to form RNAs of varying sequences (see Figure 2, next page). These diverse RNAs accumulated on the planet, ...
... to form ribonucleotides (a chemical composed of a ribose, a nucleobase, and a phosphate). In time, perhaps aided by mineral or clay catalysts, ribonucleotides assembled into long chain polymers to form RNAs of varying sequences (see Figure 2, next page). These diverse RNAs accumulated on the planet, ...
Methylocapsa palsarum sp. nov., a Methanotrophic Bacterium from a
... Nitrogen sources are nitrates, urea, L-proline, L-alanine, L-asparagine, peptone and yeast extract. ...
... Nitrogen sources are nitrates, urea, L-proline, L-alanine, L-asparagine, peptone and yeast extract. ...
Let`s see How Dramatic Effect can be drawn by Point Mutation with
... U is inserted between two G and the frame is changed. The new codons made by insertion are matched to some materials that give dramatic effect. Change of reading frame ...
... U is inserted between two G and the frame is changed. The new codons made by insertion are matched to some materials that give dramatic effect. Change of reading frame ...
Southern Blotting and Related DNA Detection Techniques
... Southern blot in a buffer containing the hybridization probe, usually in a tube that is constantly rotated so all parts of the membrane are exposed to the probe, or alternatively in a sealed plastic bag that is placed on a shaker. Hybridization is carried out in two stages. First, the membrane is pre ...
... Southern blot in a buffer containing the hybridization probe, usually in a tube that is constantly rotated so all parts of the membrane are exposed to the probe, or alternatively in a sealed plastic bag that is placed on a shaker. Hybridization is carried out in two stages. First, the membrane is pre ...
Journal of Biotechnology 84:
... formation of Organo-P compounds with the organic acids, which are further used as nutrient source by the bacteria. These evidences also support the idea that P concentration is not a reliable parameter for assessing phosphate solubilization capability of a microbial strain for comparative studies. I ...
... formation of Organo-P compounds with the organic acids, which are further used as nutrient source by the bacteria. These evidences also support the idea that P concentration is not a reliable parameter for assessing phosphate solubilization capability of a microbial strain for comparative studies. I ...
Developmental Signaling by Noggin and Wnt in the Frog Xenopus
... First off, I want to thank Nikki, I could not have done any of this without you. I’m so excited for our lives and all the adventures we’ll have together. Mom, you always said I could do this, especially when I didn’t think I could. Thank you, I’ll always remember Melinda Mae. Dad, thanks for all the ...
... First off, I want to thank Nikki, I could not have done any of this without you. I’m so excited for our lives and all the adventures we’ll have together. Mom, you always said I could do this, especially when I didn’t think I could. Thank you, I’ll always remember Melinda Mae. Dad, thanks for all the ...
Genetics Test 3 Review Presentation
... DNA replication to reduce molecular tension caused by supercoiling. • A class of enzymes that converts DNA from one topological form to another. During replication, a topoisomerase, DNA gyrase, facilitates DNA replication by reducing molecular tension caused by supercoiling upstream from the replica ...
... DNA replication to reduce molecular tension caused by supercoiling. • A class of enzymes that converts DNA from one topological form to another. During replication, a topoisomerase, DNA gyrase, facilitates DNA replication by reducing molecular tension caused by supercoiling upstream from the replica ...
Leukaemia Section t(9;14)(p13;q32) Atlas of Genetics and Cytogenetics in Oncology and Haematology
... interval of approximately 200 kb and comprises 10 exons. Two alternative transcripts have been identified, originating from alternative promotor usage, containing exon 1A or 1B. Full length mRNA is 3650 bp. Protein PAX5 belongs to the paired box family of transcription factors, involved in a multitu ...
... interval of approximately 200 kb and comprises 10 exons. Two alternative transcripts have been identified, originating from alternative promotor usage, containing exon 1A or 1B. Full length mRNA is 3650 bp. Protein PAX5 belongs to the paired box family of transcription factors, involved in a multitu ...
Selection at the Wobble Position of Codons Read by the Same tRNA
... allowed us to distinguish between efficiency (i.e., the optimization of the speed and energetic cost) and accuracy (i.e., the optimization of decoding fidelity) as the driving forces of the translational selective pressure acting on wobble pyrimidine choice in yeast. Materials and Methods Protein-co ...
... allowed us to distinguish between efficiency (i.e., the optimization of the speed and energetic cost) and accuracy (i.e., the optimization of decoding fidelity) as the driving forces of the translational selective pressure acting on wobble pyrimidine choice in yeast. Materials and Methods Protein-co ...
Important Factors Influencing Protein Crystallization (PDF
... crystallization solution can be prognosticate before performing in the experiment, because it is depended on the buffer pH and the pI of the protein. It is important for successful crystallization to keep the salt concentrations neither too low nor too high in the protein solution, highly salt conce ...
... crystallization solution can be prognosticate before performing in the experiment, because it is depended on the buffer pH and the pI of the protein. It is important for successful crystallization to keep the salt concentrations neither too low nor too high in the protein solution, highly salt conce ...
BMC Bioinformatics
... secretion and translocation signal, it would direct the translocation of the functional domain of AvrRpt2, which would then result in a hypersensitive response in Arabidopsis thaliana. This method is accurate, but very laborious and time-consuming especially when it has to meet the increasing need o ...
... secretion and translocation signal, it would direct the translocation of the functional domain of AvrRpt2, which would then result in a hypersensitive response in Arabidopsis thaliana. This method is accurate, but very laborious and time-consuming especially when it has to meet the increasing need o ...
AT3 (Acyltransferase) Gene Isolated from Capsicum frutescens cv
... through PCR using forward primer 5’-ATG GCT TTT GCA TTA CCA TCA-3’ and reverse primer 5’CCT TCA CAA TTA TTC GCC CA-3’. Data were analyzed using DNA Baser, BLAST, and ClustalX. This study has successfully isolated 404 bp fragments of AT3 gene. These fragments are located at 1918-1434 bp referred to A ...
... through PCR using forward primer 5’-ATG GCT TTT GCA TTA CCA TCA-3’ and reverse primer 5’CCT TCA CAA TTA TTC GCC CA-3’. Data were analyzed using DNA Baser, BLAST, and ClustalX. This study has successfully isolated 404 bp fragments of AT3 gene. These fragments are located at 1918-1434 bp referred to A ...
Milestone10
... You should submit these 21 sequences to the Gibbs Motif Sampler web server. These 21 sequences come from the same genome, why do we expect common patterns in these sequences? Since the microarray data suggests that the genes are co-expressed, i.e., they are expressed under the same conditions, the g ...
... You should submit these 21 sequences to the Gibbs Motif Sampler web server. These 21 sequences come from the same genome, why do we expect common patterns in these sequences? Since the microarray data suggests that the genes are co-expressed, i.e., they are expressed under the same conditions, the g ...