—1— User Guide © Copyright 2009 Robert C. Edgar, all rights
... (inter) once for the entire genome, then the intra-chromosome simulator (intra) once for each chromosome. This process is called a cycle. The output from one cycle can be used as input to another cycle. It is generally better to run many short cycles rather than one or a few long cycles as longer cy ...
... (inter) once for the entire genome, then the intra-chromosome simulator (intra) once for each chromosome. This process is called a cycle. The output from one cycle can be used as input to another cycle. It is generally better to run many short cycles rather than one or a few long cycles as longer cy ...
brindle genetics horse
... related horses segregating both, incontinentia pigmenti (Towers et al. 2013) and the BR1 phenotype for this study. Most of these horses had an American Quarter Horse or American Paint Horse registration, but some were also registered as warmblood horses. ...
... related horses segregating both, incontinentia pigmenti (Towers et al. 2013) and the BR1 phenotype for this study. Most of these horses had an American Quarter Horse or American Paint Horse registration, but some were also registered as warmblood horses. ...
An Intronic MBTPS2 Variant Results in a Splicing Defect in Horses
... related horses segregating both, incontinentia pigmenti (Towers et al. 2013) and the BR1 phenotype for this study. Most of these horses had an American Quarter Horse or American Paint Horse registration, but some were also registered as warmblood horses. ...
... related horses segregating both, incontinentia pigmenti (Towers et al. 2013) and the BR1 phenotype for this study. Most of these horses had an American Quarter Horse or American Paint Horse registration, but some were also registered as warmblood horses. ...
Microarrays: The Future of Prenatal Genetic Testing
... as an adjunct tool in prenatal cases with abnormal anatomic findings and a normal conventional karyotype, as well as in cases of fetal demise with congenital anomalies and the inability to obtain a ...
... as an adjunct tool in prenatal cases with abnormal anatomic findings and a normal conventional karyotype, as well as in cases of fetal demise with congenital anomalies and the inability to obtain a ...
Research Project Final Report
... 54. Total Defra project costs (agreed fixed price) 5. Project: ...
... 54. Total Defra project costs (agreed fixed price) 5. Project: ...
talk
... 1972 - Pigott and Carr - Quantitative relatedness study of Euglena chloroplast DNA and cyanobacterial DNA. 1978 - Schwartz and Dayhoff – Protein and RNA or DNA sequencing suggests chloroplasts are reduced forms of cyanobacteria 1993 - Hallick et al., Reith and Munholland - Entire chloroplast sequenc ...
... 1972 - Pigott and Carr - Quantitative relatedness study of Euglena chloroplast DNA and cyanobacterial DNA. 1978 - Schwartz and Dayhoff – Protein and RNA or DNA sequencing suggests chloroplasts are reduced forms of cyanobacteria 1993 - Hallick et al., Reith and Munholland - Entire chloroplast sequenc ...
The complete mitochondrial genome of Channa argus, Channa
... The structural organization and location of different features in the snakehead mitochondrial genomes conformed to the common vertebrate mitochondrial genome model and consisted of 13 protein-coding genes, 2 rRNAs, 22 tRNAs and 1 putative control region (Liu and Cui 2009). Like other vertebrates, mo ...
... The structural organization and location of different features in the snakehead mitochondrial genomes conformed to the common vertebrate mitochondrial genome model and consisted of 13 protein-coding genes, 2 rRNAs, 22 tRNAs and 1 putative control region (Liu and Cui 2009). Like other vertebrates, mo ...
Determination of obesity associated gene variants related
... aim of identifying body mass associated genetic variants. Sequencing was performed on the SOLiD platform, on long-range PCR fragments generated through targeted amplification of the regions of interest. Candidate single nucleotide polymorphisms (SNPs) were validated by TaqMan genotyping. We were able ...
... aim of identifying body mass associated genetic variants. Sequencing was performed on the SOLiD platform, on long-range PCR fragments generated through targeted amplification of the regions of interest. Candidate single nucleotide polymorphisms (SNPs) were validated by TaqMan genotyping. We were able ...
MOLECULAR CYTOGENETIC ANALYSES IN WHEAT AND
... decades many results have been achieved in this field. Basic breeding material with more favourable agronomic properties have been developed carrying genes or chromosome segments from the Aegilops, Secale, Agropyron and Triticum genera. Translocations, and addition and substitution lines developed u ...
... decades many results have been achieved in this field. Basic breeding material with more favourable agronomic properties have been developed carrying genes or chromosome segments from the Aegilops, Secale, Agropyron and Triticum genera. Translocations, and addition and substitution lines developed u ...
Article A Distinct Mitochondrial Genome with DUI
... Arctica islandica (Linnaeus 1767) belongs to the Heterodonta, order Veneroida and is the sole living representative of the Arcticidae family (Morton 2011). This species, known as the longest-lived non colonial species with a maximum reported life span of 507 years, is of great interest for studies o ...
... Arctica islandica (Linnaeus 1767) belongs to the Heterodonta, order Veneroida and is the sole living representative of the Arcticidae family (Morton 2011). This species, known as the longest-lived non colonial species with a maximum reported life span of 507 years, is of great interest for studies o ...
Plant Genome Resources at the National Center for Biotechnology
... 1995). Locus nomenclature is organism specific and is unreliable as a query method between species; however, the regular nomenclature of plasmids (Lederberg, 1986) is not influenced by how the plasmid or insert is used. The data for the plant maps available through Map Viewer include the marker-locu ...
... 1995). Locus nomenclature is organism specific and is unreliable as a query method between species; however, the regular nomenclature of plasmids (Lederberg, 1986) is not influenced by how the plasmid or insert is used. The data for the plant maps available through Map Viewer include the marker-locu ...
Analysis of Two Genes Encoding Prothrombin Activators in
... Complete DNA sequencing of the whole fragment of P. textillis FV and PCNS intron 2 is a step forward for the study. It has given us another set of direction to which aspects of the gene structure is worth investigating in order to elucidate the different mechanisms involved in the regulating of tran ...
... Complete DNA sequencing of the whole fragment of P. textillis FV and PCNS intron 2 is a step forward for the study. It has given us another set of direction to which aspects of the gene structure is worth investigating in order to elucidate the different mechanisms involved in the regulating of tran ...
Statistical power and significance testing in large
... ways to enhance the statistical power of genetic studies. Finally, we identify some unresolved issues in power calculations for future work. ...
... ways to enhance the statistical power of genetic studies. Finally, we identify some unresolved issues in power calculations for future work. ...
A B - Drug Metabolism and Disposition
... Indonesia, since none of the animals from Indochina analyzed possessed this allele (Table 2). Overall, 8 individuals were found heterozygous with this mutation including 6 males and 2 females; the allele frequency was estimated to be 0.020 for the animals of Indonesian origin analyzed in this ...
... Indonesia, since none of the animals from Indochina analyzed possessed this allele (Table 2). Overall, 8 individuals were found heterozygous with this mutation including 6 males and 2 females; the allele frequency was estimated to be 0.020 for the animals of Indonesian origin analyzed in this ...
Nematode genome evolution
... enabled nematodes to invade many different habitats. Analyses of the C. elegans and C. briggsae genomes suggest that these include major changes in gene content; as well as in chromosome number, structure and size. Here I discuss how the data set of ten genomes will be ideal for tackling questions a ...
... enabled nematodes to invade many different habitats. Analyses of the C. elegans and C. briggsae genomes suggest that these include major changes in gene content; as well as in chromosome number, structure and size. Here I discuss how the data set of ten genomes will be ideal for tackling questions a ...
Amplification and partial sequencing of Ixodes Scapularis Shaker
... The National Institute of Allergy and Infectious Diseases has begun funding the DNA sequencing of the deer tick genome in hopes of understanding the role ticks play in passing pathogens to humans that cause lyme disease, rocky mountain spotted fever and tularemia (9). The research project undertaken ...
... The National Institute of Allergy and Infectious Diseases has begun funding the DNA sequencing of the deer tick genome in hopes of understanding the role ticks play in passing pathogens to humans that cause lyme disease, rocky mountain spotted fever and tularemia (9). The research project undertaken ...
GLYPHOSATE RESISTANCE Background / Problem
... Is this realistic? Average human protein contains about 300 amino acids (900 nucleotides) Number of possible mutant forms of a gene: ...
... Is this realistic? Average human protein contains about 300 amino acids (900 nucleotides) Number of possible mutant forms of a gene: ...
A GENETIC LINKAGE MAP OF Phycomyces blakesleeanus
... traits in fungal genomes are thought to influence their ability to cause disease. This fungus is closely related to Phycomyces blakesleeanus, for certain common properties like taxonomic classification and including response to environmental signals. In view of these common properties, Phycomyces pr ...
... traits in fungal genomes are thought to influence their ability to cause disease. This fungus is closely related to Phycomyces blakesleeanus, for certain common properties like taxonomic classification and including response to environmental signals. In view of these common properties, Phycomyces pr ...
Supplementary Figures (doc 9746K)
... The percentages of categories of mapped regions shift from 1 lane to 4 lanes based on the Ensembl gene annotation (Homo_sapiens.GRCh37.65). At 1 lane, on average, 47% of the mapped area lies in exons, 39% is in the introns, and 14% is located in intergenic regions. However, at 4 lanes, which contain ...
... The percentages of categories of mapped regions shift from 1 lane to 4 lanes based on the Ensembl gene annotation (Homo_sapiens.GRCh37.65). At 1 lane, on average, 47% of the mapped area lies in exons, 39% is in the introns, and 14% is located in intergenic regions. However, at 4 lanes, which contain ...
Professor Anthony Monaco - AWARES, the All Wales Autism Resource
... Summary of molecular genetics research • Several groups have carried out genome screens for linkage ...
... Summary of molecular genetics research • Several groups have carried out genome screens for linkage ...
A natural chimeric yeast containing genetic material from three species
... sequences of Saccharomyces sp. CID 1 and Saccharomyces sp. I F 0 1802 were identical. Also, the ATP9 sequences from S. pastorianus and S. bayanus were identical, while the sequences of other Saccharomyces species were different (Fig. 2). The data on the coding regions of the A TP8 and A TP9 genes su ...
... sequences of Saccharomyces sp. CID 1 and Saccharomyces sp. I F 0 1802 were identical. Also, the ATP9 sequences from S. pastorianus and S. bayanus were identical, while the sequences of other Saccharomyces species were different (Fig. 2). The data on the coding regions of the A TP8 and A TP9 genes su ...
The genomic substrate for adaptive radiation in African cichlid fish
... RNA was re-suspended in water. P. nyererei: 9 tissues (brain, eye, gills, heart, kidney, muscle, ovary, skin and testis) were isolated from three individuals inbred for ∼ 5 generations in the laboratory of Dr. Ole Seehausen (Eawag, Switzerland). Tissues were harvested immediately after sacrificing f ...
... RNA was re-suspended in water. P. nyererei: 9 tissues (brain, eye, gills, heart, kidney, muscle, ovary, skin and testis) were isolated from three individuals inbred for ∼ 5 generations in the laboratory of Dr. Ole Seehausen (Eawag, Switzerland). Tissues were harvested immediately after sacrificing f ...
Slide 1
... When a plant or animal is bred with a plant or animal from different stock, the process is known as hybridization. There are numerous reasons to create hybrids, including increasing genetic diversity and breeding for specific traits. It is frequently practiced in agriculture, to make stronger, hea ...
... When a plant or animal is bred with a plant or animal from different stock, the process is known as hybridization. There are numerous reasons to create hybrids, including increasing genetic diversity and breeding for specific traits. It is frequently practiced in agriculture, to make stronger, hea ...
Mutator Transposon in Maize and MULEs in the Plant Genome
... Mu insertions, especially germinally transmitted insertions [14]. Only two maize lines with active MuDR elements have been identified so far, but all maize lines carry MuDR elements derivatives, or homologous MuDR sequences (hMuDRs), whose coding sequences are 80%–99% identical to those of MuDR. Sur ...
... Mu insertions, especially germinally transmitted insertions [14]. Only two maize lines with active MuDR elements have been identified so far, but all maize lines carry MuDR elements derivatives, or homologous MuDR sequences (hMuDRs), whose coding sequences are 80%–99% identical to those of MuDR. Sur ...
Whole genome sequencing
Whole genome sequencing (also known as full genome sequencing, complete genome sequencing, or entire genome sequencing) is a laboratory process that determines the complete DNA sequence of an organism's genome at a single time. This entails sequencing all of an organism's chromosomal DNA as well as DNA contained in the mitochondria and, for plants, in the chloroplast.Whole genome sequencing should not be confused with DNA profiling, which only determines the likelihood that genetic material came from a particular individual or group, and does not contain additional information on genetic relationships, origin or susceptibility to specific diseases. Also unlike full genome sequencing, SNP genotyping covers less than 0.1% of the genome. Almost all truly complete genomes are of microbes; the term ""full genome"" is thus sometimes used loosely to mean ""greater than 95%"". The remainder of this article focuses on nearly complete human genomes.High-throughput genome sequencing technologies have largely been used as a research tool and are currently being introduced in the clinics. In the future of personalized medicine, whole genome sequence data will be an important tool to guide therapeutic intervention. The tool of gene sequencing at SNP level is also used to pinpoint functional variants from association studies and improve the knowledge available to researchers interested in evolutionary biology, and hence may lay the foundation for predicting disease susceptibility and drug response.