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Final Examination
Final Examination

... Other than this primer extension reaction and labeling of the DNA so it can be detected, what are the two key methodological steps in Sanger DNA sequencing that make it possible to use this simple primer extension reaction to determine the sequence of DNA? 1) Dideoxy nucleotides are used in the exte ...
Chromosomes, Genes and DNA - School
Chromosomes, Genes and DNA - School

... How do genes make proteins? Genes are made of DNA. Proteins are made of amino acids. Each amino acid is coded for by its own special sequence of three bases called a triplet: ...
DNA
DNA

... Minute amounts of DNA template may be used from as little as a single cell.  DNA degraded to fragments only a few hundred base pairs in length can serve as effective templates for amplification.  Large numbers of copies of specific DNA sequences can be amplified simultaneously with multiplex PCR r ...
Chromosomes, Genes and DNA
Chromosomes, Genes and DNA

PCR Polymerase Chain Reaction
PCR Polymerase Chain Reaction

... In most reactions, the extension step performed at 72 ° C. ...
Southern Analysis: - California State University San Marcos
Southern Analysis: - California State University San Marcos

genetic engineering and biotechonology
genetic engineering and biotechonology

... DNA profiling (DNA fingerprinting) is a technique for genetic analysis, which identifies the variations found in the DNA of every individual. The profile refers to the distinctive pattern of fragments which is used to identify an individual. DNA profiling does not determine a base sequence for a sa ...
When Mount Vesuvius erupted in 79 A
When Mount Vesuvius erupted in 79 A

... The right panel shows a summary of the multitude of types of damamge found in ancient DNA. This damage either limits the length of continuous sequence that can be recovered or renders even well-preserved specimens unproductive despite the demonstrable presence of DNA (by hybridization) We reasoned t ...
Powerpoint Slides
Powerpoint Slides

... •In addition, the proper formation of the complete, pristine, double helix (completely double-stranded) requires the proper amount of TIME and CONCENTRATION of nucleic acid. •Plots of this are called Cot curves, which are much like Tm curves. •Cot values are dependent on the complexity of the sequen ...
Split hand/foot malformations with microdeletions at chromosomes
Split hand/foot malformations with microdeletions at chromosomes

... comparative genomic hybridization platforms can cover approximately one clone per megabase to one clone per 100 kb. Commercial whole-genome oligonucleotide arrays range from one probe per 6e70 kb. Shaikh [7] reported a detailed review and comparison of various commercial oligonucleotide array platfo ...
Localization of different microsatellites and a minisatellite
Localization of different microsatellites and a minisatellite

... Detection of (GATA)4 showed a maximum number of 8 sites on six chromosomes. The two most intensive signals of (GATA)4 were located in the centromeric heterochromatin of two medium-sized chromosomes. Four distinct loci could be found in the long euchromatic part of two nucleolus organizing (NO)-chrom ...
Myriad and Prometheus
Myriad and Prometheus

... of U.S. intellectual property law and practice. These materials reflect only the personal views of the speaker and are not individualized legal advice. It is understood that each case is fact-specific, and that the appropriate solution in any case will vary. Therefore, these materials may or may not ...
Procedure - IFM - Linköpings universitet
Procedure - IFM - Linköpings universitet

... In order to safely be able to find transformants with the cloned gene there are a number of different methods. The best thing is to do a plasmid preparation on a number of colonies and determine the DNA sequence of the different clones. Since this method is somewhat tedious, we will try to do "colon ...
1. The Building Blocks of DNA
1. The Building Blocks of DNA

... Sequences of DNA that exist quite distant from a given gene can affect the regulation of that gene. They could thus be considered part of the functional gene unit, even though separated by long segments of DNA having nothing to do with the gene in question. In many eukaryotes some of the DNA between ...
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Document

recombinant DNA. Lesson Overview
recombinant DNA. Lesson Overview

... carry the plasmid from those that don’t. After transformation, the bacteria culture is treated with an antibiotic. Only those cells that have been transformed survive, because only they carry the resistance gene. ...
DNA intro website questions
DNA intro website questions

... (DNA structure) 4. What does DNA stand for? 5. What are the two purines? 6. What are the two pyrimidines? 7. The human genome contains over_____________ base pairs. (DNA Replication) 8. What splits the strands of DNA apart? 9. How many hydrogen bonds are between adenine and thymine? 10. How many hyd ...
chapter 8 and 9
chapter 8 and 9

... 1) Should have it’s own replicon i.e., be capable of autonomous replication in the host cell 2) Should carry one or more selectable markers that permit identification of parent and recombinant vectors 3) Restriction sites in non-essential regions of DNA into which foreign DNA can be inserted ...
Restriction Enzymes
Restriction Enzymes

... Type I- multi-subunit, both endonuclease and methylase activities, cleave at random up to 1000 bp from recognition sequence Type II- most single subunit, cleave DNA within recognition sequence Type III- multi-subunit, endonuclease and methylase about 25 bp from recognition sequence ...
Chapter 4: DNA and Chromosomes
Chapter 4: DNA and Chromosomes

Strawberry-DNA Extraction Workshop 86 Bio Preparation
Strawberry-DNA Extraction Workshop 86 Bio Preparation

... The purification of chromosomal DNA is frequently the first step in molecular-cloning experiments. Scientists can collect and redissolve the precipitate in a smaller volume. This is a convenient way to concentrate nucleic acids. Alcohol precipitations also remove small molecules, such as buffer salt ...
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... shown in karyotype • Note this person only has 1 copy of the X chromosome. • This female has Turner’s syndrome. ...
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Document

... shown in karyotype • Note this person only has 1 copy of the X chromosome. • This female has Turner’s syndrome. ...
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Document

DNA as the Genetic Material
DNA as the Genetic Material

... 1. Remember, DNA consists of a nitrogenous base (which can be adenine (A), thymine (T), guanine (G), or cytosine (C)), a pentose sugar called deoxyribose, and a phosphate group 2. Chargaff also discovered that the amount of A is always close to T, and G = C. 3. Hence, Chargaff’s rule: A pairs with T ...
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Comparative genomic hybridization



Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells. The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related, because it is suspected that they contain differences in terms of either gains or losses of either whole chromosomes or subchromosomal regions (a portion of a whole chromosome). This technique was originally developed for the evaluation of the differences between the chromosomal complements of solid tumor and normal tissue, and has an improved resoIution of 5-10 megabases compared to the more traditional cytogenetic analysis techniques of giemsa banding and fluorescence in situ hybridization (FISH) which are limited by the resolution of the microscope utilized.This is achieved through the use of competitive fluorescence in situ hybridization. In short, this involves the isolation of DNA from the two sources to be compared, most commonly a test and reference source, independent labelling of each DNA sample with a different fluorophores (fluorescent molecules) of different colours (usually red and green), denaturation of the DNA so that it is single stranded, and the hybridization of the two resultant samples in a 1:1 ratio to a normal metaphase spread of chromosomes, to which the labelled DNA samples will bind at their locus of origin. Using a fluorescence microscope and computer software, the differentially coloured fluorescent signals are then compared along the length of each chromosome for identification of chromosomal differences between the two sources. A higher intensity of the test sample colour in a specific region of a chromosome indicates the gain of material of that region in the corresponding source sample, while a higher intensity of the reference sample colour indicates the loss of material in the test sample in that specific region. A neutral colour (yellow when the fluorophore labels are red and green) indicates no difference between the two samples in that location.CGH is only able to detect unbalanced chromosomal abnormalities. This is because balanced chromosomal abnormalities such as reciprocal translocations, inversions or ring chromosomes do not affect copy number, which is what is detected by CGH technologies. CGH does, however, allow for the exploration of all 46 human chromosomes in single test and the discovery of deletions and duplications, even on the microscopic scale which may lead to the identification of candidate genes to be further explored by other cytological techniques.Through the use of DNA microarrays in conjunction with CGH techniques, the more specific form of array CGH (aCGH) has been developed, allowing for a locus-by-locus measure of CNV with increased resolution as low as 100 kilobases. This improved technique allows for the aetiology of known and unknown conditions to be discovered.
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