2012-04-16_Geuvadis_Analysis_CRG_Marc
... e.g. if a nucleotide is covered by a read with a single genome mapping and a read with ten genome mappings, it will be assigned an intensity of 1 + 0.1 = 1.1 ...
... e.g. if a nucleotide is covered by a read with a single genome mapping and a read with ten genome mappings, it will be assigned an intensity of 1 + 0.1 = 1.1 ...
Ecophysiology of Thioploca ingrica as revealed by the
... whole-genome sequencing, and its draft genome sequence is now available in public databases; however, this strain cannot accumulate nitrate. The draft genome sequences of nitrate-storing sulfur oxidizers have been obtained for Candidatus Isobeggiatoa and Candidatus Parabeggiatoa, both of which are f ...
... whole-genome sequencing, and its draft genome sequence is now available in public databases; however, this strain cannot accumulate nitrate. The draft genome sequences of nitrate-storing sulfur oxidizers have been obtained for Candidatus Isobeggiatoa and Candidatus Parabeggiatoa, both of which are f ...
ParameciumDB - Nucleic Acids Research
... The central panel shows that we are looking at a Sequence Feature of Type ‘gene’. The score in this case is that provided by Genoscope’s automated annotation (14). For sequence features of type ‘match’, i.e. for UniProt matches, it is the match score. All names and synonyms are provided, and these a ...
... The central panel shows that we are looking at a Sequence Feature of Type ‘gene’. The score in this case is that provided by Genoscope’s automated annotation (14). For sequence features of type ‘match’, i.e. for UniProt matches, it is the match score. All names and synonyms are provided, and these a ...
The dnrM gene in Streptomyces peucetius contains a
... (RHO) or DNR produced by these strains (Table 2) were the same within experimental error. These results indicate the following : first, an uninterrupted copy of dnrM is not required for the synthesis of DNR; second, a gene encoding a functional TDP-Dglucose 4,6-dehydratase must be present in S. pezl ...
... (RHO) or DNR produced by these strains (Table 2) were the same within experimental error. These results indicate the following : first, an uninterrupted copy of dnrM is not required for the synthesis of DNR; second, a gene encoding a functional TDP-Dglucose 4,6-dehydratase must be present in S. pezl ...
Combining curated homology and syntenic context reveals gene
... Ohno (1970). Ohnologs are an important legacy of WGD, representing the genes that did not return to single copy in the genome and that form a pool of genetic material from which new functions (neofunctionalization) or specialization of daughter genes (subfunctionalization) can evolve. The ohnologs t ...
... Ohno (1970). Ohnologs are an important legacy of WGD, representing the genes that did not return to single copy in the genome and that form a pool of genetic material from which new functions (neofunctionalization) or specialization of daughter genes (subfunctionalization) can evolve. The ohnologs t ...
Population Genetics and a Study of Speciation Using Next
... through a hybrid zone accentuates regions of the genome contributing to reproductive isolation by decreasing differences in DNA sequence elsewhere in the genome. Based on the idea that divergent seminal fluid proteins have played an important role in speciation, Andrés et al. (2013) hypothesized ...
... through a hybrid zone accentuates regions of the genome contributing to reproductive isolation by decreasing differences in DNA sequence elsewhere in the genome. Based on the idea that divergent seminal fluid proteins have played an important role in speciation, Andrés et al. (2013) hypothesized ...
RNA processing
... • This results in a protein domain at the end of IgM that attaches it to the membrane • The cell can produce an IgM that is free in the serum by not including that exon in the mature message ...
... • This results in a protein domain at the end of IgM that attaches it to the membrane • The cell can produce an IgM that is free in the serum by not including that exon in the mature message ...
Blochmannia floridanus: The genome sequence of Comparative analysis of reduced genomes
... Wigglesworthia glossinidia with tsetse flies. These symbiotic bacteria reside in specialized host cells called bacteriocytes, which form symbiotic organs called bacteriomes. The bacterial transmission occurs vertically: the eggs or young embryos are infected by microorganisms derived from the mother ...
... Wigglesworthia glossinidia with tsetse flies. These symbiotic bacteria reside in specialized host cells called bacteriocytes, which form symbiotic organs called bacteriomes. The bacterial transmission occurs vertically: the eggs or young embryos are infected by microorganisms derived from the mother ...
Gene Enrichment Analysis
... they are assigned to groups of genes one can de ne patterns instead of labeling each gene manually. Many tools exist for assessing signi cance of enrichment within a group. These typically employ hypergeometric (TANGO) testing, but can also be based on a KolmogorovSmirnov statistic (GSEA). These too ...
... they are assigned to groups of genes one can de ne patterns instead of labeling each gene manually. Many tools exist for assessing signi cance of enrichment within a group. These typically employ hypergeometric (TANGO) testing, but can also be based on a KolmogorovSmirnov statistic (GSEA). These too ...
Chapter 15 Guided Reading
... 22. Use the example of the albumin and the crystallin gene to support your answer to #52. ...
... 22. Use the example of the albumin and the crystallin gene to support your answer to #52. ...
Search - VectorBase
... case and searches may give you no or incomplete results because not every gene has metadata associated with it. Other search strategies which for finding genes will be discussed later in this document. Search for AALB002800, AALB002801, AALB002802. F ilter with Genome domain and Translation sub-d ...
... case and searches may give you no or incomplete results because not every gene has metadata associated with it. Other search strategies which for finding genes will be discussed later in this document. Search for AALB002800, AALB002801, AALB002802. F ilter with Genome domain and Translation sub-d ...
Implications of the Human Genome for Understanding Human
... now live in a world in which the 2.9 billion nucleotide codes of the human genome are available as a resource for scientific discovery. Some of the findings from the sequencing of the human genome were expected, confirming knowledge presaged by many decades of research in both human and comparative ...
... now live in a world in which the 2.9 billion nucleotide codes of the human genome are available as a resource for scientific discovery. Some of the findings from the sequencing of the human genome were expected, confirming knowledge presaged by many decades of research in both human and comparative ...
Presentazione standard di PowerPoint
... anticlockwise, respectively (gray, conserved in all eight other sequenced E. coli strains; red, conserved only in the B2 phylogroup; yellow, variable distribution; blue, E2348/69 specific), the fifth circle shows the tRNA genes (red), the sixth circle shows the rRNA operons (blue), the seventh circl ...
... anticlockwise, respectively (gray, conserved in all eight other sequenced E. coli strains; red, conserved only in the B2 phylogroup; yellow, variable distribution; blue, E2348/69 specific), the fifth circle shows the tRNA genes (red), the sixth circle shows the rRNA operons (blue), the seventh circl ...
Reconstruction of Amino Acid Biosynthesis Pathways from the
... although this organism also seems to have all the amino acid biosynthesis pathways as shown by Tatusov et al. (1996) as well. This may suggest the possibility that an enzyme in H. influenzae plays multiple functional roles that are taken by different enzymes in E. coli. For example, E. coli has tyro ...
... although this organism also seems to have all the amino acid biosynthesis pathways as shown by Tatusov et al. (1996) as well. This may suggest the possibility that an enzyme in H. influenzae plays multiple functional roles that are taken by different enzymes in E. coli. For example, E. coli has tyro ...
Gene Prediction Techniques - Computational Biology of RNA
... usually caused by mutations in a single gene that makes the protein it encodes not to function properly or not to function at all. These are called Mendelian diseases or hereditary diseases, and can have different type of inheritance (Dominant, Recessive or X-linked). In this short practical we intr ...
... usually caused by mutations in a single gene that makes the protein it encodes not to function properly or not to function at all. These are called Mendelian diseases or hereditary diseases, and can have different type of inheritance (Dominant, Recessive or X-linked). In this short practical we intr ...
DNA Technology and Genomics I.
... The typical human gene specifies several different polypeptides by using different combinations of exons. D. Nearly all human genes contain several exons, and an estimated 75% of these multiexon genes are alternatively spliced. Along with this is additional polypeptide diversity via posttranslationa ...
... The typical human gene specifies several different polypeptides by using different combinations of exons. D. Nearly all human genes contain several exons, and an estimated 75% of these multiexon genes are alternatively spliced. Along with this is additional polypeptide diversity via posttranslationa ...
The Origin of the Jingwei Gene and the Complex Modular Structure
... silent sites (Long and Langley 1993). This gene was observed to have specific RNA expression patterns, and its evolution was driven by ubiquitous Darwinian positive selection (Long and Langley 1993), which usually acts only on functional genes. These results suggest that jgw is a newly evolved funct ...
... silent sites (Long and Langley 1993). This gene was observed to have specific RNA expression patterns, and its evolution was driven by ubiquitous Darwinian positive selection (Long and Langley 1993), which usually acts only on functional genes. These results suggest that jgw is a newly evolved funct ...
Convergent evolution of antifreeze glycoproteins in
... AFGP genes are transcribed and translated into large polyproteins that are posttranslationally cleaved. The near-identical AFGP protein structures from the two fishes have led to suggestions of a common ancestor (18), and the apparent similarities in their AFGP genes appear to support such an argume ...
... AFGP genes are transcribed and translated into large polyproteins that are posttranslationally cleaved. The near-identical AFGP protein structures from the two fishes have led to suggestions of a common ancestor (18), and the apparent similarities in their AFGP genes appear to support such an argume ...
Chapter 9
... Multiplication of the entire chromosome complement is called polyploidy. When all the genomes are the same, it is called autopolyploidy. When two (or more) different genomes are duplicated, it is called allopolyploidy. ...
... Multiplication of the entire chromosome complement is called polyploidy. When all the genomes are the same, it is called autopolyploidy. When two (or more) different genomes are duplicated, it is called allopolyploidy. ...
Bio research bio and fromatics lab - BLI-Research-Synbio
... Background: The NCBI contains a database of genes from multiple organisms that have been sequenced and identified. The work of a number of scientists across a wide variety of research areas provides the information compiled in this database. The tool used in this activity is BLAST - Basic Logical Al ...
... Background: The NCBI contains a database of genes from multiple organisms that have been sequenced and identified. The work of a number of scientists across a wide variety of research areas provides the information compiled in this database. The tool used in this activity is BLAST - Basic Logical Al ...
erma application internal cover sheet
... The green blowfly Lucilia sericata is one of four blowfly species associated with sheep flystrike in New Zealand. However, this species is also used in medical applications of sterile maggots to treat wounds that do not respond well to antibiotics. This project seeks approval to produce transgenic s ...
... The green blowfly Lucilia sericata is one of four blowfly species associated with sheep flystrike in New Zealand. However, this species is also used in medical applications of sterile maggots to treat wounds that do not respond well to antibiotics. This project seeks approval to produce transgenic s ...
Comparative Genomic Study of upstream Open Reading Frames
... The untranslated regions of mRNA molecules are involved in several posttranscriptional regulatory pathways. The 5’UTR is the sequence between the 5’ terminal cap structure and the initiation codon for protein synthesis. The 5’ end (the leader) can accurately regulate the amount of protein synthesise ...
... The untranslated regions of mRNA molecules are involved in several posttranscriptional regulatory pathways. The 5’UTR is the sequence between the 5’ terminal cap structure and the initiation codon for protein synthesis. The 5’ end (the leader) can accurately regulate the amount of protein synthesise ...
ppt - GEP Community Server
... These programs do work to a certain extent The information they provide is better than nothing The predictions have high error rates ...
... These programs do work to a certain extent The information they provide is better than nothing The predictions have high error rates ...
Transposable element
A transposable element (TE or transposon) is a DNA sequence that can change its position within the genome, sometimes creating or reversing mutations and altering the cell's genome size. Transposition often results in duplication of the TE. Barbara McClintock's discovery of these jumping genes earned her a Nobel prize in 1983.TEs make up a large fraction of the C-value of eukaryotic cells. There are at least two classes of TEs: class I TEs generally function via reverse transcription, while class II TEs encode the protein transposase, which they require for insertion and excision, and some of these TEs also encode other proteins. It has been shown that TEs are important in genome function and evolution. In Oxytricha, which has a unique genetic system, they play a critical role in development. They are also very useful to researchers as a means to alter DNA inside a living organism.