Environmental Microbiology Reports
... Production of growth-promoting substances, such as auxins, by the bacteria in the inoculants, which has been demonstrated in vitro, may be the determinant responsible factor for the growth promotion (Lee et al., 2004). Therefore, a question remains which bacterium or bacterial consortium is responsi ...
... Production of growth-promoting substances, such as auxins, by the bacteria in the inoculants, which has been demonstrated in vitro, may be the determinant responsible factor for the growth promotion (Lee et al., 2004). Therefore, a question remains which bacterium or bacterial consortium is responsi ...
Birhanu Abera, et al - International Journal of Current Research
... A study was conducted between December, 2012 and January, 2013 to estimate prevalence, isolate major bacterial pathogens for mastitis and to establish antimicrobial sensitivity for isolates in Asella government dairy farm. A total of 66 lactating cows and 264 quarters were constituted in the study b ...
... A study was conducted between December, 2012 and January, 2013 to estimate prevalence, isolate major bacterial pathogens for mastitis and to establish antimicrobial sensitivity for isolates in Asella government dairy farm. A total of 66 lactating cows and 264 quarters were constituted in the study b ...
Effect of pH on Cleavage of Glycogen by Vaginal Enzymes
... Fig 4. Types of commensal bacteria in genital samples. Levels of vaginal bacteria and vaginal pH corresponding to samples with Type I and Type II pH sensitivity. Bacteria were quantified in genital samples by species-specific real time PCR. Representative results from two assays are shown. Each assa ...
... Fig 4. Types of commensal bacteria in genital samples. Levels of vaginal bacteria and vaginal pH corresponding to samples with Type I and Type II pH sensitivity. Bacteria were quantified in genital samples by species-specific real time PCR. Representative results from two assays are shown. Each assa ...
Genomic analysis of the histidine kinase family in bacteria and
... phosphotransfer reactions can also occur within a single HK. These so-called hybrid HKs contain additional phosphotransfer modules referred to as the D1 receiver and the HPt phosphotransfer domains that are attached to the C-terminal side of the kinase domain (Appleby et al., 1996). The number of HK ...
... phosphotransfer reactions can also occur within a single HK. These so-called hybrid HKs contain additional phosphotransfer modules referred to as the D1 receiver and the HPt phosphotransfer domains that are attached to the C-terminal side of the kinase domain (Appleby et al., 1996). The number of HK ...
ABO genotyping in leukemia patients reveals new ABO variant alleles
... individuals into four blood groups (A, B, O, and AB). Numerous phenotypes with weak expression of A and B on red cells have been detected and different terminologies have been adopted for ABO subgroup classification (Issitt and Anstee, 1998). The sequence of nucleotides comprising the ABO gene, its ...
... individuals into four blood groups (A, B, O, and AB). Numerous phenotypes with weak expression of A and B on red cells have been detected and different terminologies have been adopted for ABO subgroup classification (Issitt and Anstee, 1998). The sequence of nucleotides comprising the ABO gene, its ...
ATCC® BACTeriAl CulTure Guide
... respiration. Aerobic organisms, such as Bacillus species, use oxygen as a terminal electron acceptor during respiration. Similarly, microaerophiles, such as Helicobacter pylori, also require the use of oxygen, but at lower levels than naturally occurring in the environment. In contrast, anaerobic or ...
... respiration. Aerobic organisms, such as Bacillus species, use oxygen as a terminal electron acceptor during respiration. Similarly, microaerophiles, such as Helicobacter pylori, also require the use of oxygen, but at lower levels than naturally occurring in the environment. In contrast, anaerobic or ...
Integrated mapping and characterization of the gene underlying the
... iScan. Image files were saved and analysed using the GenomeStudio Genotyping Module (v.1.9.4, Illumina). Genotype calls for each SNP were based on the cluster file generated specifically for the CottonSNP63K array (Hulse-Kemp et al., 2015). For KASP genotyping, the DNA concentration of each sample w ...
... iScan. Image files were saved and analysed using the GenomeStudio Genotyping Module (v.1.9.4, Illumina). Genotype calls for each SNP were based on the cluster file generated specifically for the CottonSNP63K array (Hulse-Kemp et al., 2015). For KASP genotyping, the DNA concentration of each sample w ...
Diversity of halophilic bacteria in saline soil
... amelioration has been replantation. This strategy is to prevent the uplifting of saline groundwater. Unfortunately, the implementation of this strategy was not very successful because of the complicated problems of the soil salinity itself and the other soil problems. Halophilic microorganisms are o ...
... amelioration has been replantation. This strategy is to prevent the uplifting of saline groundwater. Unfortunately, the implementation of this strategy was not very successful because of the complicated problems of the soil salinity itself and the other soil problems. Halophilic microorganisms are o ...
Bordetella pertussis evolution in the (functional
... parapertussis. While a number of ptxP alleles have been identified among B. pertussis, including ptxp3 (and see below), all contain several differences from the B. bronchiseptica promoter that likely enhance transcription of the locus by enhancing binding of BvgA (Parkhill et al. 2003). Thus, the B. ...
... parapertussis. While a number of ptxP alleles have been identified among B. pertussis, including ptxp3 (and see below), all contain several differences from the B. bronchiseptica promoter that likely enhance transcription of the locus by enhancing binding of BvgA (Parkhill et al. 2003). Thus, the B. ...
Parallel Evolution of Copy-Number Variation across Continents in
... only on both continents (see Materials and Methods). This second approach was essential for the Australian samples for which only single-end reads were sequenced (see Materials and Methods). We found 190 CNVs >50 bp in length showing marked allele frequency differences in the United States (based on ...
... only on both continents (see Materials and Methods). This second approach was essential for the Australian samples for which only single-end reads were sequenced (see Materials and Methods). We found 190 CNVs >50 bp in length showing marked allele frequency differences in the United States (based on ...
11236005
... was used to justify and determine the identity of these bacteria with the aid of results obtained from the biochemical tests that were undertaken. They have remarkably reacted to the azo dye Reactive Violet 5R. They have decolorized this dye with each of them producing unique results. The decoloriza ...
... was used to justify and determine the identity of these bacteria with the aid of results obtained from the biochemical tests that were undertaken. They have remarkably reacted to the azo dye Reactive Violet 5R. They have decolorized this dye with each of them producing unique results. The decoloriza ...
Ebola Zaire (EZ1) JBAIDS pre-EUA
... AAF primer and probe set is designed to detect DNA from the E. coli O104:H4 bacteria in stool specimens from patients. PCR assays utilize a thermocyclic heating and cooling of the reaction to logarithmically amplify a specific region of DNA. The probe anneals to a specific target sequence located be ...
... AAF primer and probe set is designed to detect DNA from the E. coli O104:H4 bacteria in stool specimens from patients. PCR assays utilize a thermocyclic heating and cooling of the reaction to logarithmically amplify a specific region of DNA. The probe anneals to a specific target sequence located be ...
The amelogenin gene
... skipping exon 4 is a protein of 19.8 kDa with 175 amino acid residues and which trom Y is a 20 kDa protein with 176 amino acids. The methionine at residue 29 of the Y -chromosome amelogenin is absent from the X amelogenin, due to a 3-base deletion in the human X amelogenin gene. The overall sequence ...
... skipping exon 4 is a protein of 19.8 kDa with 175 amino acid residues and which trom Y is a 20 kDa protein with 176 amino acids. The methionine at residue 29 of the Y -chromosome amelogenin is absent from the X amelogenin, due to a 3-base deletion in the human X amelogenin gene. The overall sequence ...
Introns Structure Patterns of Variation in Nucleotide Composition in
... described and supported by expression data, ending up with a similar number of genes in both species (18,134 in A. thaliana and 17,862 in rice). Gene models for which at least one element was less than 10 nt long were discarded to avoid to compute GC-content on too few nts. In the two studied specie ...
... described and supported by expression data, ending up with a similar number of genes in both species (18,134 in A. thaliana and 17,862 in rice). Gene models for which at least one element was less than 10 nt long were discarded to avoid to compute GC-content on too few nts. In the two studied specie ...
TaqMan® Drug Metabolism Genotyping Assays
... rights under the applicable claims of US patents, and corresponding patent claims outside the United States, which claim 5’ nuclease methods. No right under any other patent claim and no right to perform commercial services of any kind, including without limitation reporting the results of purchaser ...
... rights under the applicable claims of US patents, and corresponding patent claims outside the United States, which claim 5’ nuclease methods. No right under any other patent claim and no right to perform commercial services of any kind, including without limitation reporting the results of purchaser ...
Bacillus qingshengii sp. nov., a rock
... described by Bogan et al. (2003) and Zhang et al. (2008). Motility was tested in R2A broth supplemented with 0.2 % agar (Weon et al., 2008). Endospores were stained with malachite green (Prescott & Harley, 2001) and observed with an Imager Z1 fluorescence microscope (Carl Zeiss; 61000 magnification) ...
... described by Bogan et al. (2003) and Zhang et al. (2008). Motility was tested in R2A broth supplemented with 0.2 % agar (Weon et al., 2008). Endospores were stained with malachite green (Prescott & Harley, 2001) and observed with an Imager Z1 fluorescence microscope (Carl Zeiss; 61000 magnification) ...
Rapid Detection of GES-type Extended-spectrum time PCR Assay β
... The extended-spectrum β-lactamases in bacteria 2.4.1 Characterisation of ESBLs in bacteria 2.4.2 Types of ESBLs in bacteria 2.4.2.1 TEM-type ESBLs (class A) in bacteria 2.4.2.2 SHV-Type ESBLs (class A) in bacteria 2.4.2.3 Cefotaximase-Type ESBLs (class A) in bacteria 2.4.2.4 Oxacillinase-Type ESBLs ...
... The extended-spectrum β-lactamases in bacteria 2.4.1 Characterisation of ESBLs in bacteria 2.4.2 Types of ESBLs in bacteria 2.4.2.1 TEM-type ESBLs (class A) in bacteria 2.4.2.2 SHV-Type ESBLs (class A) in bacteria 2.4.2.3 Cefotaximase-Type ESBLs (class A) in bacteria 2.4.2.4 Oxacillinase-Type ESBLs ...
Free sample of Test Bank for
... 2. All cellular organisms can be placed into one of three __________, which include the Bacteria, Archaea, and the Eukarya. domains ...
... 2. All cellular organisms can be placed into one of three __________, which include the Bacteria, Archaea, and the Eukarya. domains ...
OLSON LAB PROTOCOL: Agarose Gel Electrophoresis using GelRed
... one or more tracking dyes that can be seen to migrate through the gel and provides enough density for the PCR sample to sink in the wells. 11. Mix the 1 ul of sample and 4 ul of loading buffer by gently pipetting up and down and then load the entire 5 ul into a well. If necessary, place the gel tank ...
... one or more tracking dyes that can be seen to migrate through the gel and provides enough density for the PCR sample to sink in the wells. 11. Mix the 1 ul of sample and 4 ul of loading buffer by gently pipetting up and down and then load the entire 5 ul into a well. If necessary, place the gel tank ...
Regulatory Motifs in DNA Sequences
... • Examine frequencies of l-tuples, combinations of 2 symbols, 3 symbols, etc. • “The” is the most frequent 3-tuple in English and “;48” is the most frequent 3tuple in the encrypted text • Make inferences of unknown symbols by examining other frequent l-tuples ...
... • Examine frequencies of l-tuples, combinations of 2 symbols, 3 symbols, etc. • “The” is the most frequent 3-tuple in English and “;48” is the most frequent 3tuple in the encrypted text • Make inferences of unknown symbols by examining other frequent l-tuples ...
Notes for Chaper 4 of the Jones/Pevzer book
... • Nucleotides in motifs encode for a message in the “genetic” language. Symbols in “The Gold Bug” encode for a message in English • In order to solve the problem, we analyze the frequencies of patterns in DNA/Gold Bug message. • Knowledge of established regulatory motifs makes the Motif Finding prob ...
... • Nucleotides in motifs encode for a message in the “genetic” language. Symbols in “The Gold Bug” encode for a message in English • In order to solve the problem, we analyze the frequencies of patterns in DNA/Gold Bug message. • Knowledge of established regulatory motifs makes the Motif Finding prob ...
GSEA - Bioinformatics Unit
... 1. Choose true (default) to have GSEA collapse each probe set in your expression dataset into a single gene vector, which is identified by its HUGO gene symbol. In this case, you are using HUGO gene symbols for the analysis. The gene sets that you use for the analysis must use HUGO gene symbols to i ...
... 1. Choose true (default) to have GSEA collapse each probe set in your expression dataset into a single gene vector, which is identified by its HUGO gene symbol. In this case, you are using HUGO gene symbols for the analysis. The gene sets that you use for the analysis must use HUGO gene symbols to i ...
Amoebae in Moisture- Damaged Buildings
... Moisture damage in buildings and consequent microbial growth are associated with adverse health effects suffered by the occupants. Although the association is well documented epidemiologically, the exact causative agents for the health effects are not usually known. Even though the microbial network ...
... Moisture damage in buildings and consequent microbial growth are associated with adverse health effects suffered by the occupants. Although the association is well documented epidemiologically, the exact causative agents for the health effects are not usually known. Even though the microbial network ...
Analyzing Loss of Heterozygosity in in Partek Genomics Suite™ v6.6
... SNPs are known to be population specific, the interpretation of the data should be performed with caution in cases when baseline files of other populations are used. Therefore, the paired design is preferred whenever possible as it is more accurate in its expected genotype frequencies and does not r ...
... SNPs are known to be population specific, the interpretation of the data should be performed with caution in cases when baseline files of other populations are used. Therefore, the paired design is preferred whenever possible as it is more accurate in its expected genotype frequencies and does not r ...
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.