Symbolic Systems Biology
... For each type there are three parameters G: a goal set---occurrences required to be present at the end of a path A: an avoid set---occurrences that must not appear in any transition fired H: as list of identifiers of transitions that must not be fired subnet returns a subnet containing all (minimal) ...
... For each type there are three parameters G: a goal set---occurrences required to be present at the end of a path A: an avoid set---occurrences that must not appear in any transition fired H: as list of identifiers of transitions that must not be fired subnet returns a subnet containing all (minimal) ...
Comparison of environmental and isolate Sulfobacillus genomes
... and central carbon metabolisms for these genomes and previously published Sulfobacillus genomes. Pathways of sulfur oxidation vary considerably across the genus, including the number and type of subunits of putative heterodisulfide reductase complexes likely involved in sulfur oxidation. The number ...
... and central carbon metabolisms for these genomes and previously published Sulfobacillus genomes. Pathways of sulfur oxidation vary considerably across the genus, including the number and type of subunits of putative heterodisulfide reductase complexes likely involved in sulfur oxidation. The number ...
Effects of Protein-Deprivation on the Regeneration of Rat Liver after
... receive food containing 24% (w/w) protein throughout the experimental period. Rats in the experimental groups to be compared were of approximately the same body weight at the end of the feeding period (McGowan & Fausto, 1978). Although the intake of calories in the two dietary groups could be contro ...
... receive food containing 24% (w/w) protein throughout the experimental period. Rats in the experimental groups to be compared were of approximately the same body weight at the end of the feeding period (McGowan & Fausto, 1978). Although the intake of calories in the two dietary groups could be contro ...
17C-SynthesisOfProtein
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
Homologous Promoter Use in Genetic Modification
... transgenic lines that did not exhibit the high-oleate phenotype, provided a suitable resource to study the impact of the use of a homologous promoter on the activity of an endogenous promoter. The level of the α-globulin B protein in the seed is expected to accurately reflect the activity of its prom ...
... transgenic lines that did not exhibit the high-oleate phenotype, provided a suitable resource to study the impact of the use of a homologous promoter on the activity of an endogenous promoter. The level of the α-globulin B protein in the seed is expected to accurately reflect the activity of its prom ...
17C-SynthesisOfProtein
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
CHAPTER 17 FROM GENE TO PROTEIN Section C: The Synthesis
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
... • A point mutation that results in replacement of a pair of complimentary nucleotides with another nucleotide pair is called a base-pair substitution. • Some base-pair substitutions have little or no impact on protein function. • In silent mutations, alterations of nucleotides still indicate the sa ...
A Survey of Left-handed Helices in Protein Structures
... structural parameters.5 To our knowledge, the handedness of helices in proteins has not been studied systematically, and not much is known about left-handed helices other than that they are very rare. Stretches of amino acids with unusual backbone conformations (e.g. left-handed helices) often appea ...
... structural parameters.5 To our knowledge, the handedness of helices in proteins has not been studied systematically, and not much is known about left-handed helices other than that they are very rare. Stretches of amino acids with unusual backbone conformations (e.g. left-handed helices) often appea ...
Journal of Agricultural and Food Chemistry
... phenylalanine. Changes in maximum emission wavelength and fluorescence intensity of these amino acids reflect alterations in protein structure because of different denaturing factors. The amounts of chromofors in the investigated proteins are sufficient to avoid inclusion of fluorescent probes (Zems ...
... phenylalanine. Changes in maximum emission wavelength and fluorescence intensity of these amino acids reflect alterations in protein structure because of different denaturing factors. The amounts of chromofors in the investigated proteins are sufficient to avoid inclusion of fluorescent probes (Zems ...
Photosynthesis genes in marine viruses yield proteins during host
... the phage genome is a function of photosynthesis. We thus propose that the phage genes are functional in photosynthesis and that they may be increasing phage fitness by supplementing the host production of these proteins. Photosynthesis in cyanobacteria, algae and plants requires two photosystems (d ...
... the phage genome is a function of photosynthesis. We thus propose that the phage genes are functional in photosynthesis and that they may be increasing phage fitness by supplementing the host production of these proteins. Photosynthesis in cyanobacteria, algae and plants requires two photosystems (d ...
Aminoacylated tmRNA from Escherichia coli interacts with
... The aim of this study was to test the above assumption and to discover whether aminoacylated tmRNA forms a ternary complex with Thermus thermophilus EF-Tu and GTP+ The choice of the thermophilic protein was dictated by the available crystal structures of ternary complexes comprising this factor, con ...
... The aim of this study was to test the above assumption and to discover whether aminoacylated tmRNA forms a ternary complex with Thermus thermophilus EF-Tu and GTP+ The choice of the thermophilic protein was dictated by the available crystal structures of ternary complexes comprising this factor, con ...
CHM325
... Examine the active site residues of alkaline phosphatase and propose functions for these active site residues. Examine the mechanism of alkaline phosphatase and using kinetic data propose specific roles for several active site residues. ...
... Examine the active site residues of alkaline phosphatase and propose functions for these active site residues. Examine the mechanism of alkaline phosphatase and using kinetic data propose specific roles for several active site residues. ...
9c63$$mr30 Black separation
... number of oral bacterial species have the metabolic capabilities necessary to produce and survive in the presence of high levels of H2S [26, 27], and T. denticola is a prominent representative of this physiological phenotype. Chu et al. [30 – 32] have recently described the isolation of a 46-kDa pro ...
... number of oral bacterial species have the metabolic capabilities necessary to produce and survive in the presence of high levels of H2S [26, 27], and T. denticola is a prominent representative of this physiological phenotype. Chu et al. [30 – 32] have recently described the isolation of a 46-kDa pro ...
No Slide Title
... who is interested in the structures of proteins, nucleic acids, polysaccharides, and other complex substances with higher molecular weights will come to rely upon a new structural chemistry, involving precise geometrical relationships among the atoms in the molecules and the rigorous application of ...
... who is interested in the structures of proteins, nucleic acids, polysaccharides, and other complex substances with higher molecular weights will come to rely upon a new structural chemistry, involving precise geometrical relationships among the atoms in the molecules and the rigorous application of ...
Chapter 5 - Red Hook Central Schools
... • Polypeptides are polymers built from a set of 20 amino acids (monomers). • The sequence of amino acids determines a protein’s 3D three-dimensional structure. • A protein’s structure determines its function. • A wide variety of proteins can be made from a few monomers by varying the amino acid sequ ...
... • Polypeptides are polymers built from a set of 20 amino acids (monomers). • The sequence of amino acids determines a protein’s 3D three-dimensional structure. • A protein’s structure determines its function. • A wide variety of proteins can be made from a few monomers by varying the amino acid sequ ...
CHEMISTRY 112 - LECTURE NOTES
... - secondary and tertiary structures develop as polypeptide chain grows; while still attached to the ribosome, polypeptide chain begins coiling/folding (secondary/tertiary structure) due to local hydrogen bonding between amino & carboxyl functional groups, and R group interactions - the polypeptide c ...
... - secondary and tertiary structures develop as polypeptide chain grows; while still attached to the ribosome, polypeptide chain begins coiling/folding (secondary/tertiary structure) due to local hydrogen bonding between amino & carboxyl functional groups, and R group interactions - the polypeptide c ...
subset seed extension to protein blast
... therein concerning expressibility of different classes of seeds). It is also argued that the algorithmic cost may thus be reduced, as application of seeds allows the use of a direct indexing scheme based on hashing. In addition, a comparison of subset seed technique with the vector seed approach (Br ...
... therein concerning expressibility of different classes of seeds). It is also argued that the algorithmic cost may thus be reduced, as application of seeds allows the use of a direct indexing scheme based on hashing. In addition, a comparison of subset seed technique with the vector seed approach (Br ...
Document
... Analyzing vertebrate genomes requires rapid mRNA/DNA and crossspecies protein alignments. BLAT (the BLAST-like alignment tool) was developed by Jim Kent from UCSC. It is more accurate and 500 times faster than popular existing tools such as BLAST for mRNA/DNA alignments and 50 times faster for prote ...
... Analyzing vertebrate genomes requires rapid mRNA/DNA and crossspecies protein alignments. BLAT (the BLAST-like alignment tool) was developed by Jim Kent from UCSC. It is more accurate and 500 times faster than popular existing tools such as BLAST for mRNA/DNA alignments and 50 times faster for prote ...
Cellular Pathophysiology of Insulin Resistance
... Poretsky LO, ed. New York, Springer,2009, p. 75-87. ...
... Poretsky LO, ed. New York, Springer,2009, p. 75-87. ...
Partial Purification and Characterization of the Maize Mitochondrial
... peaked at a higher point in the glycerol gradient (Fig. 1B). Monoclonal antibodies to maize E1a recognized the 43-kD band in immunoblots (Fig. 2B). However, this single 43-kD band presented six isoelectric forms on immunoblots after two-dimensional IEF/SDS-PAGE separation (Fig. 3B). These multiple i ...
... peaked at a higher point in the glycerol gradient (Fig. 1B). Monoclonal antibodies to maize E1a recognized the 43-kD band in immunoblots (Fig. 2B). However, this single 43-kD band presented six isoelectric forms on immunoblots after two-dimensional IEF/SDS-PAGE separation (Fig. 3B). These multiple i ...
Comparison of Sample Sequences of the Genome to the Sequence K-12
... less significant than 1e25, a level at which the significance of any alignments are unreliable. These entirely novel sequences of no known function which occur in S. typhi but not E. coli K-12 presumably include some genes encoding novel functions. Three-way comparisons. Pairwise comparisons of Blas ...
... less significant than 1e25, a level at which the significance of any alignments are unreliable. These entirely novel sequences of no known function which occur in S. typhi but not E. coli K-12 presumably include some genes encoding novel functions. Three-way comparisons. Pairwise comparisons of Blas ...
Disallowed Ramachandran Conformations of Amino Acid Residues
... side-chains. In the case of hydrophobic residues, compensating hydrogen bond interactions are restricted only to backbone amide groups. Indeed, inspection of the 66 disallowed residues revealed that, except in one case, main-chain–main-chain/ main-chain–side-chain/side-chain–side-chain hydrogen bond ...
... side-chains. In the case of hydrophobic residues, compensating hydrogen bond interactions are restricted only to backbone amide groups. Indeed, inspection of the 66 disallowed residues revealed that, except in one case, main-chain–main-chain/ main-chain–side-chain/side-chain–side-chain hydrogen bond ...
Two-hybrid screening
Two-hybrid screening (also known as yeast two-hybrid system or Y2H) is a molecular biology technique used to discover protein–protein interactions (PPIs) and protein–DNA interactions by testing for physical interactions (such as binding) between two proteins or a single protein and a DNA molecule, respectively.The premise behind the test is the activation of downstream reporter gene(s) by the binding of a transcription factor onto an upstream activating sequence (UAS). For two-hybrid screening, the transcription factor is split into two separate fragments, called the binding domain (BD) and activating domain (AD). The BD is the domain responsible for binding to the UAS and the AD is the domain responsible for the activation of transcription. The Y2H is thus a protein-fragment complementation assay.