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SBI4U: Unit 1 Test - Biochemistry Review Sheet Test Breakdown (Approximate. May change slightly) Knowledge/Understandi ng Thinking/Inquiry /35 /20 Communication Application /20 /15 Multiple Choice, Diagrams, Labelling, Matching, Short Answers Topics/Vocabulary: Cell Structure (All the organelles on the chart) - be able to label/understand main function Chemistry Overview Intramolecular Force Ionic Bond Covalent Bond (polar/non-polar) Intermolecular Force Hydrogen Bonding Electronegativity Polar Bond Hydrophillic Hydriphobic Functional Group Hydroxyl Carbonyl Ketone Aldehyde Carboxyl Phosphate Sulfhydryl Condensation/Dehydration Hydrolysis Reaction Neutralization Redox Reactions Acid Base Macromolecules Monomer Polymer Glycosidic Linkage Carbohydrates Monosaccharide Disaccharide Polysaccharide Glucose, Fructose, Galactose, Sucrose, Lactose, Starch, Glycogen, Cellulose, Chitin Lipids Triglycerides Phospholipids Steroids Glycerol Fatty Acids Ester Linkage Saturated Fatty Acid Unsaturated Fatty Acid Polyunsaturated Fatty Acid Trans Fat Hormone Proteins Amino Acid Peptide Bond Essential/Non-essential Amino acids R-group Polypeptide Primary, Secondary, Tertiary, Quaternary Structure Nucleic Acids Nucleotides Nitrogen Base Deoxyribose Sugar Ribose Sugar Purines (Adenine, Guanine) Pyrimidines (Thimine, Cytosine, Uracil) DNA vs. RNA Hydrogen Bonds Double Helix Phosphodiester Bonds Tests for Macromolecules Benedict’s Test Lugol Test Sudan Red Test Biuret Test Enzymes Catalyst Activation Energy Substrate Active Site Enzyme-Substrate Complex Lock and Key Model Induced Fit Model Inhibitor Competitive Inhibitor Non-competitive Inhibitor Allosteric Regulation Allosteric Binding Site Allosteric Activator Allosteric Inhibitor Membrane Transport Cell Membrane Fluid-Mosaic Model Integral Protein Peripheral Protein Glycoprotein Glycolipid Channel Protein Carrier Protein Cholesterol Semi-Permeable Membrane Diffusion/Facilitated Diffusion Osmosis Solute/Solvent Active Transport Passive Transport Sodium Potassium Pump Review Questions: Compare and contrast between the following terms: Intermolecular/Intramolecular Intermolecular - bond/force between atoms of different molecules (Hydrogen bond, van der waals etc) Intramolecular – bond between atoms within molecule (ionic, covalent) Ionic Bond/ Covalent Bond Ionic bond – transfer of electrons between atoms to form a strong bond Covalent bond – sharing of electrons between atoms to form a bond Carboxyl/Carbonyl Carnonyl group - C=O Carboxyl group – contains a carbonyl plus an OH group attached to the carbon O || C-O-H Molecule/ Macromolecule Molecule - A substance composed of two or more atoms covalently bonded together Macromolecules - composed of long complex chains of molecules (polymers), made of small subunits (monomers) covalently bonded together *both formed by covalent bonds Carbohydrate/ Protein *both macromolecules Carbohydrates – made up of monosaccharide monomers; contains C, H, O in a ratio of 1:2:1; monomers linked by glycosidic linkages Proteins – made up of amino acid monomers; contain C, H, O and N; monomers linked by peptide bonds Chloroplast/ Mitochondria *both organelles and responsible for energy production (ATP) Chloroplasts – found in photosynthetic organisms (plants) Mitochondria – found in both plant and animal cells Benedict’s Test/ Lugol Test *both test for presence of macromolecules Benedict’s Test – tests for presence of monosaccharides; Benedict’s solution added to sample and heated; colour change from blue to pink indicates presence of monosaccharides Lugol Test – tests for presence of polysaccharide starches; iodine added to sample; colour changes to dark purple in presence of starch. Integral Protein/ Peripheral Protein *Both are proteins associated with the cellular membrane Integral Proteins – embedded in the cellular membrane; function as channel or carrier proteins Peripheral Proteins – associated temporarily with outer regions of the membrane or with integral proteins; one function is to catalyze reactions (enzymes) Solute/ Solvent Solute – the dissolved substance Solvent – the substance that does the dissolving (e.g. glucose in water; water is the solvent and glucose is the solute) Active Transport/ Passive Transport *both methods of transporting materials across the cellular membrane Active transport – requires energy to move materials across the cellular membrane from and area of low concentration to high concentration (against concentration gradient) Passive transport – does not require energy to move materials across the cellular membrane from an area of high concentration to low concentration (with concentration gradient) Active Site/ Allosteric Site *Both sites found on an enzyme Active site – site on the enzyme that binds the substrate and where the chemical reaction that is being catalyzed takes place Allosteric Site – site on the enzyme that is not the active site; other molecules (NOT the substrate) bind to regular activity of the enzyme by changing the shape of the enzyme 2. a) Draw a diagram showing how a polymer is formed from two monomers for each type of macromolecule below. b) Name the monomer c) Name the type of bond formed (You should also be able to show how two monomers are formed from a polymer) Carbohydrate Monomer: Monosaccharide Type of Bond: Glycosidic Bond Lipid Monomer: Fatty Acids Type of Bond: Ester Bond Protein Monomer: Amino Acids Type of Bond: Peptide Bond Nucleic Acid Monomer: Nucleotides Type of Bond: Phosphodiester Bond E.g. Triglyceride *phosphodiester bond between the phosphate of one nucleotide and the pentose sugar or another nucleotide Fill in the chart below with the appropriate information. Organelle What type of cells is it found in? (plant, animal, both) Function Vacuole BOTH (large central vacuole in plant cells; many small vacuoles in animal cells) - large membrane bound sac - stores water, ions, macromolecules, sugars, amino acids etc. Ribosomes BOTH - responsible for synthesis of polypeptides (protein synthesis) - found in cytosol and surface of rough ER Chloroplast PLANTS ONLY - produce energy (ATP) through photosynthesis PLANTS ONLY - rigid outer layer of plant cells that provide shape and structural support Nucleus BOTH - controls cell activity by regulating gene expression Mitochondria BOTH - produces/supply energy (ATP) Rough Endoplasmic Reticulum BOTH - covered in ribosomes - sort proteins that are destined for ER, Golgi, vacuoles, etc. Cell Wall 5. Complete the following table regarding the 4 main types of biological molecules. Macromolecule Monomer (subunit) Function Nucleic Acids Nucleotides stores genetic information; protein synthesis Proteins Amino acids Enzymes/catalysts (speeds up chemical reactions); transport; enables movement; carries messages; fights infections Lipids Phosphate group + glycerol + 2 fatty acids OR Glycerol + 3 fatty acids Etc. Long term energy storage; cushions and insulates organs; main part of cell membrane; sex hormones Carbohydrates Monosaccharides Short term energy storage What is each of the following tests used for Benedict’s Test, Lugol Test, Sudan Red Test, and Biuret Test? For each test describe what a positive reaction would look like. Benedict’s Test – tests for presence of monosaccharides; Solution changes from blue to pink Lugol Test – tests for presence of polysaccharide starch; Iodine solution turns dark purple Sudan Red Test – tests for presence of lipids; dye absorbed by lipids – spots of colour Biuret Test – tests for presence of proteins; KOH and CuSO4 solution turns purple Protein Test Lipids Test Sudan Red test Lugol test Benedict test Food sample Carbohydrate Tests Biuret test Analyze the date below and answer the following questions. A + – – – E - - + + G - + - - M - - - + A. B. C. D. Is sample E most likely to be steak, bread, or butter? Justify your answer. STEAK Is sample G most likely to be table sugar (sucrose), pasta, or olive oil? Justify your answer. PASTA Is sample M most likely to be chicken, rice, a mango, or butter? Justify your answer. BUTTER Why would you get negative results in all tests for LACTOSE? Lactose is a DISACCHARIDE. None of the above tests detect the presence of disaccharides. Compare the lock and key model to the induced fit model. How are they similar? How are they different? In both models, enzymes are specific to substrates. Enzymes catalyse a specific type of reaction. Lock and Key Model Active site on enzyme is the lock and the substrate is the key The enzyme has an active site that is unchanging Substrate binds chemical reaction occurs Induced Fit Model The enzyme can change its shape 1. One substrate molecule binds weakly 2. The enzyme’s active site changes shape so that a second substrate molecule can bind 3. The second substrate binds Chemical process (reaction) occurs Compare competitive and non-competitive inhibition. How are they similar? Give two ways they are different. Draw a picture of an enzyme and substrate that require allosteric regulation. Include the following: enzyme, active site, allosteric site, substrate, and activator. Sketch and label a diagram of the phospholipid bilayer. Label the a channel proteins, a glycoprotein, cholesterol, and phospholipids. State the role each of these plays in the membrane. Also show the route that H2O, CO2, O2, and glucose take to enter the cell. H2O - osmosis [high] [low] CO2/O2 - diffusion [high] [low] Glucose – can be facilitated diffusion when moving from [high] [low] e.g. after you eat OR active transport through transport protein when moving from [low] [high] What is a buffer? Explain why buffers are important for blood pH. A buffers is a substance that minimizes changes in pH by donating or accepting hydrogen ions as needed; neutralization reactions. Normal pH of blood is between 7.35-7.45 (slightly basic). If blood becomes too basic (alkalosis) or too acidic (acidosis) it may cause dizziness, fatigue, vomiting, or even death. Therefore, maintaining pH within the normal range is very important. To maintain blood pH, the blood uses the Carbonic acid-hydrogen carbonate ion buffer system. 7. Draw the monomer for each macromolecule. Circle and name all the functional groups in each monomer. Monosaccharide – glucose Fatty Acid Amino Acid Nucleotide 8. Complete the following chemical reactions and identify the type of reaction shown. glucose + fructose —> Sucrose Reaction Type: Dehydration Synthesis/Condensation HCl + NaOH —> H2O + NaCl Triglyceride + H2O —> 1 glycerol + 3 fatty acids d) CO2 + 6H2O —> C6H12O6 + 6O2 Reaction Type: Neutralization Reaction Type: Hydrolysis Reaction Type: Redox Textbook Review Questions: Page 49 #1-14 (MC), 17, 18, 19, 31, 42, 49, 55 Page 89 #1-15 (MC), 21, 25, 28, 31, 39 Page 100#18, 20, 25, 31, 33, 34, 40, 43, 44, 45, 63, 73 (If you want extra practice, you can can also try the Unit 1 Self-Assessments on Page 104-105) *** To study try summarizing your notes, organizing notes into summary charts/tables, drawing diagrams, writing and answering practice questions, studying with a friend. All of these techniques will help you actively think about the concepts we have covered!