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Transcript
Lectures on Computational
Biology
EFSS II
National DongHua University
Hualien, 2002 July 1-5
HC Lee
Computational Biology Lab
Center for Complex Systems & Biophysics
National Central University
What is Computational Biology?
The use of computational techniques to model biological
systems at various levels of complexity - atomic, metabolic,
cellular and pathologic.
Central dogma for molecular biology
DNA
RNA
Protein
DNA
Yeast alanyl
transfer RNA
Standard
Genetic
Code
Amino acid codes
Name, 3-letter and single-letter codes
Aspartic Acid
Phenylanine
Alanine
Histidine
Lysine
Methionine
Proline
Arginine
Threonine
Tryptophan
Asp
Phe
Ala
His
Lys
Met
Pro
Arg
Thr
Trp
D
F
A
H
K
M
P
R
T
W
Glutamic Acid
Glycine
Cystine
Isoleucine
Leucine
Asparagine
Glutamine
Serine
Valine
Tyrosine
Glu
Gly
Cys
Ile
Leu
Asn
Gln
Ser
Val
Tyr
E
G
C
I
L
N
Q
S
V
Y
A protein cartoon
Sperm whale myoglobin (1MBN)
The Protein Folding Problem
Central paradigm for Bioinformatics
Central Paradigm
Lecture 1
Sequence Alignment
Lecture 2
Hidden Markov Model
Lecture 3
Molecular Evolution and
Phylogeny
Lecture 4
Microarray & Analysis